BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01780.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935904 jgi|Araly1|935904|scaffold_500095.1 283 1e-75
> Ahg935904 jgi|Araly1|935904|scaffold_500095.1
Length=439
Score = 283 bits (153), Expect = 1e-75
Identities = 220/251 (88%), Gaps = 10/251 (4%)
Strand=Plus/Plus
Query 190 TTTTCCAACAATAATCTT-GTCCTTGAT-GATCAAGCTGGTATCCGTGTTTGGGGCACAA 247
||||||||||| || ||| ||||| | | ||||||||||| | |||||||||||| || |
Sbjct 164 TTTTCCAACAACAA-CTTCGTCCTCG-TCGATCAAGCTGGAACCCGTGTTTGGGGGACGA 221
Query 248 ATTTTATGGGAGTTGTTGGCTC-ATCGTTGGTTAAAGAGTTTCTTGATGATGGAAACTTT 306
| ||| ||||||| || |||| || ||||||| |||| ||||| |||||||||||||
Sbjct 222 AGTTTCCGGGAGTTATTAGCTCAAT-GTTGGTTGTAGAGCTTCTTAATGATGGAAACTTC 280
Query 307 GTTATCAAGAACACATGGGACAACGACACAGCTGGTTTCTTATGGCAAAGCTTTGATTTC 366
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 281 ATTATCAAGAACACATGGGACAACGACACAGATGGTTTTTTATGGCAAAGCTTTGATTTC 340
Query 367 C-TGACTGATACTTTACTGCCAGGTATGGCATTGGGTTGGAAATTTCACA-GGGGAATCA 424
| | |||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||
Sbjct 341 CCT-ACTGATACTTTACTGCGAGGTATGGCATTGGGTTGGAATTTTCACAAGGGGA-TCA 398
Query 425 ATCGATACTTG 435
|||||||||||
Sbjct 399 ATCGATACTTG 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5