BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01800.1 Length=915 Score E Sequences producing significant alignments: (Bits) Value Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261 418 4e-116 Ahg924087 jgi|Araly1|924087|scaffold_105368.1 377 6e-104 Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454 182 5e-45 Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976 182 5e-45 Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731 176 2e-43 Ahg950324 jgi|Araly1|950324|scaffold_802211.1 169 4e-41 > Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261 Length=987 Score = 418 bits (226), Expect = 4e-116 Identities = 329/377 (87%), Gaps = 14/377 (4%) Strand=Plus/Plus Query 526 GATGGTCATACCATTGATGTTGAGGCCAAGCTTGATCTT-TCAGGGACAATGGAACAAGA 584 ||||||||| ||| ||||||||||||||| ||||||||| | ||||||||||||| | | Sbjct 541 GATGGTCATGCCAATGATGTTGAGGCCAATCTTGATCTTAT-GGGGACAATGGAAC-A-A 597 Query 585 CGACCTTCAAAAGGAGGTAACAAATGCTGATTTAGTCATGAGTGACCAAGACAAGGATCT 644 || ||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||| Sbjct 598 -GATCTTCAAAAGGATGTAGCAAATGCTGATTTAGTCATGATTGACGAAGACAAGGATCT 656 Query 645 TGA-AAAGGATAATCTTCTAGCTGAATTACACCAAACTACTGATGATGCTGAGAAAGAAG 703 ||| ||| ||||||||| || |||||||| |||||||| |||||||||||||||| |||| Sbjct 657 TGAGAAA-GATAATCTTTTAACTGAATTATACCAAACTTCTGATGATGCTGAGAACGAAG 715 Query 704 AG-ATCATAGGTCTTGTTAATGCTACTCCG-GAAGCTATTG-AGA--ACGAAACTGAGAT 758 | |||||| || ||||||||||||| | |||| |||| | | ||||||||| ||| Sbjct 716 -GTCTCATAGATCCTGTTAATGCTACT-TGTCAAGCAATTGAAAACTACGAAACTGGGAT 773 Query 759 GAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTaaaaagaaaaa 818 | || | |||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 774 GGGTACAAAGGAAGAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGAAAAA 833 Query 819 aaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAG 878 |||||||| ||||| ||||| || | |||||||||||||||||||||||||||||||||| Sbjct 834 AAGAGCAAGGAAAGACAAGAATCTGGCTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAG 893 Query 879 GAACGCTGAGGAAGATG 895 |||||| ||||| |||| Sbjct 894 GAACGCAGAGGAGGATG 910 Score = 303 bits (164), Expect = 1e-81 Identities = 253/295 (86%), Gaps = 9/295 (3%) Strand=Plus/Plus Query 28 GTCTTTGTGAAGACTAGTATTGACACTCGTC-TGGCGCTCCTCCTTGATAGTGATGATAG 86 ||||| |||||||| |||||||| ||||||| ||| || |||||||| ||||||||||| Sbjct 37 GTCTTCGTGAAGACAAGTATTGATACTCGTCTTGG-ACTTCTCCTTGACAGTGATGATAG 95 Query 87 TGTATATGCTTTCAAAGAGAAAATCTGCAAAGAGCATGAACAATGTTTCCCAAGTGTTGG 146 ||||| |||||||||||| ||||||||||| || |||||||| ||||||||||||||||| Sbjct 96 TGTATCTGCTTTCAAAGACAAAATCTGCAAGGAACATGAACAGTGTTTCCCAAGTGTTGG 155 Query 147 CAACA-T-CACTAT-TTCTGCCTTGAAGGTTAACTTGGGTGGTAATGATTATCACTTGTC 203 || | | || | | |||||||||||||||||||||||||||||| ||||| |||||| | Sbjct 156 AAAAATTACAATTTCTTCTGCCTTGAAGGTTAACTTGGGTGGTAACGATTACCACTTGCC 215 Query 204 AGATTGTACGATTTT-AAAAACCGCTCTTCAAGGCCTCCGTAACAAGGACTGGTTTCTAT 262 |||| || ||| || ||||| |||||||||||| || ||||||| |||||||||||| Sbjct 216 TGATTCTATGATATTGAAAAAG-GCTCTTCAAGGCATCAGTAACAACAACTGGTTTCTAT 274 Query 263 CAGTCGACCT-AGTACGTGTCGAGGAGAAAGGTGAGCTGCAGATTGGTGAAGTTG 316 | |||||| | | | | |||||||||||| |||||||| |||||||||||||||| Sbjct 275 CTGTCGACGTCA-TGCATGTCGAGGAGAAGGGTGAGCTCCAGATTGGTGAAGTTG 328 > Ahg924087 jgi|Araly1|924087|scaffold_105368.1 Length=1640 Score = 377 bits (204), Expect = 6e-104 Identities = 338/397 (85%), Gaps = 32/397 (8%) Strand=Plus/Plus Query 520 CCTGTCGATGGTCATACCATTGATGTTGAGGCCAAG-CTTGATCTT-TCAGGGACAATGG 577 ||||| ||||||||| |||||||||||||||| || ||||||||| | |||||||||| Sbjct 282 CCTGTTGATGGTCATTTCATTGATGTTGAGGCC-AGTCTTGATCTTAT-GGGGACAATGG 339 Query 578 AACAAGACGACCTTCAAAAGGAGGTAACAAATGCTGATTTAGTCATGA--G-TGACCAAG 634 ||| | | |||||||||||||||||| |||||||||||||||||||| | |||||||| Sbjct 340 AAC-A-A-GACCTTCAAAAGGAGGTAGGAAATGCTGATTTAGTCATGATTGATGACCAAG 396 Query 635 ACAAGGATCTT--G-AA-----AA-------GGATAATCTTCTAGCTGAATTACACCAA- 678 | ||||||||| | || || |||||||||| || |||||||| ||||| Sbjct 397 AGAAGGATCTTGAGAAAGCTTTAATGGTTGTGGATAATCTTTTAACTGAATTAAACCAAT 456 Query 679 ACTACTGATGATGCTGAGAAAGAAGAG-ATCATAG--G-TCTTGTTAATGCTACTCCGGA 734 | ||||||||||| |||||| |||| | |||||| | |||||||||||||||| | || Sbjct 457 A-TACTGATGATGTTGAGAACGAAG-GTCTCATAGTAGATCTTGTTAATGCTACTTCTGA 514 Query 735 AGCTATTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAA 794 ||| ||| | ||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 515 AGCAATTAAAAACGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAA 574 Query 795 ATCTGAGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGA 854 ||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||| Sbjct 575 ATCTGAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAAGACTCCGGCTAAAGAAGA 634 Query 855 TGGTCTAGTTGCTTCTAGCTCAAGGAACGCTGAGGAA 891 || ||||||||||||||||||||||||||||| |||| Sbjct 635 TGCTCTAGTTGCTTCTAGCTCAAGGAACGCTGGGGAA 671 > Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454 Length=180 Score = 182 bits (98), Expect = 5e-45 Identities = 118/128 (92%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 740 TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 799 ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 26 TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 85 Query 800 AGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTC 859 |||||||||| |||||||||||| ||||||||| |||||||||| |||||| ||||| || Sbjct 86 AGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAAGACTCCGGCTAAAGTAGATGCTC 145 Query 860 TAGTTGCT 867 |||||||| Sbjct 146 TAGTTGCT 153 > Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976 Length=579 Score = 182 bits (98), Expect = 5e-45 Identities = 118/128 (92%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 740 TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 799 ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 425 TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 484 Query 800 AGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTC 859 |||||||||| |||||||||||| ||||||||| ||| ||||||||||||| ||||| || Sbjct 485 AGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAACACTCCGACTAAAGTAGATGCTC 544 Query 860 TAGTTGCT 867 |||||||| Sbjct 545 TAGTTGCT 552 > Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731 Length=321 Score = 176 bits (95), Expect = 2e-43 Identities = 118/129 (91%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 740 TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 799 ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 167 TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 226 Query 800 AGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAG-ACTCCGACTAAAGAAGATGGT 858 |||||||||| |||||||||||| ||||||||| || | ||||||||||||| ||||| | Sbjct 227 AGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCA-GCACTCCGACTAAAGTAGATGCT 285 Query 859 CTAGTTGCT 867 ||||||||| Sbjct 286 CTAGTTGCT 294 > Ahg950324 jgi|Araly1|950324|scaffold_802211.1 Length=318 Score = 169 bits (91), Expect = 4e-41 Identities = 117/129 (91%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 741 TGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGA 800 |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 190 TGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGA 249 Query 801 GAAGCCTaaaaagaa-aaaaaGAGCAAAGAAAGTCAAGACTCC-GACTAAAGAAGATGGT 858 ||||||||| ||||| ||||||| ||||||||| ||||||||| | |||||| ||||| | Sbjct 250 GAAGCCTAAGAAGAAGAAAAAGATCAAAGAAAGGCAAGACTCCAG-CTAAAGTAGATGCT 308 Query 859 CTAGTTGCT 867 ||||||||| Sbjct 309 CTAGTTGCT 317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33929396130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5