BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01800.1
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261 418 4e-116
Ahg924087 jgi|Araly1|924087|scaffold_105368.1 377 6e-104
Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454 182 5e-45
Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976 182 5e-45
Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731 176 2e-43
Ahg950324 jgi|Araly1|950324|scaffold_802211.1 169 4e-41
> Ahg337696 jgi|Araly1|337696|fgenesh1_pg.C_scaffold_1004261
Length=987
Score = 418 bits (226), Expect = 4e-116
Identities = 329/377 (87%), Gaps = 14/377 (4%)
Strand=Plus/Plus
Query 526 GATGGTCATACCATTGATGTTGAGGCCAAGCTTGATCTT-TCAGGGACAATGGAACAAGA 584
||||||||| ||| ||||||||||||||| ||||||||| | ||||||||||||| | |
Sbjct 541 GATGGTCATGCCAATGATGTTGAGGCCAATCTTGATCTTAT-GGGGACAATGGAAC-A-A 597
Query 585 CGACCTTCAAAAGGAGGTAACAAATGCTGATTTAGTCATGAGTGACCAAGACAAGGATCT 644
|| ||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 598 -GATCTTCAAAAGGATGTAGCAAATGCTGATTTAGTCATGATTGACGAAGACAAGGATCT 656
Query 645 TGA-AAAGGATAATCTTCTAGCTGAATTACACCAAACTACTGATGATGCTGAGAAAGAAG 703
||| ||| ||||||||| || |||||||| |||||||| |||||||||||||||| ||||
Sbjct 657 TGAGAAA-GATAATCTTTTAACTGAATTATACCAAACTTCTGATGATGCTGAGAACGAAG 715
Query 704 AG-ATCATAGGTCTTGTTAATGCTACTCCG-GAAGCTATTG-AGA--ACGAAACTGAGAT 758
| |||||| || ||||||||||||| | |||| |||| | | ||||||||| |||
Sbjct 716 -GTCTCATAGATCCTGTTAATGCTACT-TGTCAAGCAATTGAAAACTACGAAACTGGGAT 773
Query 759 GAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTaaaaagaaaaa 818
| || | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 774 GGGTACAAAGGAAGAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGAAAAA 833
Query 819 aaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAG 878
|||||||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 834 AAGAGCAAGGAAAGACAAGAATCTGGCTAAAGAAGATGGTCTAGTTGCTTCTAGCTCAAG 893
Query 879 GAACGCTGAGGAAGATG 895
|||||| ||||| ||||
Sbjct 894 GAACGCAGAGGAGGATG 910
Score = 303 bits (164), Expect = 1e-81
Identities = 253/295 (86%), Gaps = 9/295 (3%)
Strand=Plus/Plus
Query 28 GTCTTTGTGAAGACTAGTATTGACACTCGTC-TGGCGCTCCTCCTTGATAGTGATGATAG 86
||||| |||||||| |||||||| ||||||| ||| || |||||||| |||||||||||
Sbjct 37 GTCTTCGTGAAGACAAGTATTGATACTCGTCTTGG-ACTTCTCCTTGACAGTGATGATAG 95
Query 87 TGTATATGCTTTCAAAGAGAAAATCTGCAAAGAGCATGAACAATGTTTCCCAAGTGTTGG 146
||||| |||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 96 TGTATCTGCTTTCAAAGACAAAATCTGCAAGGAACATGAACAGTGTTTCCCAAGTGTTGG 155
Query 147 CAACA-T-CACTAT-TTCTGCCTTGAAGGTTAACTTGGGTGGTAATGATTATCACTTGTC 203
|| | | || | | |||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 156 AAAAATTACAATTTCTTCTGCCTTGAAGGTTAACTTGGGTGGTAACGATTACCACTTGCC 215
Query 204 AGATTGTACGATTTT-AAAAACCGCTCTTCAAGGCCTCCGTAACAAGGACTGGTTTCTAT 262
|||| || ||| || ||||| |||||||||||| || ||||||| ||||||||||||
Sbjct 216 TGATTCTATGATATTGAAAAAG-GCTCTTCAAGGCATCAGTAACAACAACTGGTTTCTAT 274
Query 263 CAGTCGACCT-AGTACGTGTCGAGGAGAAAGGTGAGCTGCAGATTGGTGAAGTTG 316
| |||||| | | | | |||||||||||| |||||||| ||||||||||||||||
Sbjct 275 CTGTCGACGTCA-TGCATGTCGAGGAGAAGGGTGAGCTCCAGATTGGTGAAGTTG 328
> Ahg924087 jgi|Araly1|924087|scaffold_105368.1
Length=1640
Score = 377 bits (204), Expect = 6e-104
Identities = 338/397 (85%), Gaps = 32/397 (8%)
Strand=Plus/Plus
Query 520 CCTGTCGATGGTCATACCATTGATGTTGAGGCCAAG-CTTGATCTT-TCAGGGACAATGG 577
||||| ||||||||| |||||||||||||||| || ||||||||| | ||||||||||
Sbjct 282 CCTGTTGATGGTCATTTCATTGATGTTGAGGCC-AGTCTTGATCTTAT-GGGGACAATGG 339
Query 578 AACAAGACGACCTTCAAAAGGAGGTAACAAATGCTGATTTAGTCATGA--G-TGACCAAG 634
||| | | |||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 340 AAC-A-A-GACCTTCAAAAGGAGGTAGGAAATGCTGATTTAGTCATGATTGATGACCAAG 396
Query 635 ACAAGGATCTT--G-AA-----AA-------GGATAATCTTCTAGCTGAATTACACCAA- 678
| ||||||||| | || || |||||||||| || |||||||| |||||
Sbjct 397 AGAAGGATCTTGAGAAAGCTTTAATGGTTGTGGATAATCTTTTAACTGAATTAAACCAAT 456
Query 679 ACTACTGATGATGCTGAGAAAGAAGAG-ATCATAG--G-TCTTGTTAATGCTACTCCGGA 734
| ||||||||||| |||||| |||| | |||||| | |||||||||||||||| | ||
Sbjct 457 A-TACTGATGATGTTGAGAACGAAG-GTCTCATAGTAGATCTTGTTAATGCTACTTCTGA 514
Query 735 AGCTATTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAA 794
||| ||| | ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 515 AGCAATTAAAAACGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAA 574
Query 795 ATCTGAGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGA 854
||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 575 ATCTGAGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAAGACTCCGGCTAAAGAAGA 634
Query 855 TGGTCTAGTTGCTTCTAGCTCAAGGAACGCTGAGGAA 891
|| ||||||||||||||||||||||||||||| ||||
Sbjct 635 TGCTCTAGTTGCTTCTAGCTCAAGGAACGCTGGGGAA 671
> Ahg913200 jgi|Araly1|913200|Al_scaffold_0001_3454
Length=180
Score = 182 bits (98), Expect = 5e-45
Identities = 118/128 (92%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 740 TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 799
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 26 TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 85
Query 800 AGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTC 859
|||||||||| |||||||||||| ||||||||| |||||||||| |||||| ||||| ||
Sbjct 86 AGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAAGACTCCGGCTAAAGTAGATGCTC 145
Query 860 TAGTTGCT 867
||||||||
Sbjct 146 TAGTTGCT 153
> Ahg892980 jgi|Araly1|892980|Al_scaffold_0006_976
Length=579
Score = 182 bits (98), Expect = 5e-45
Identities = 118/128 (92%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 740 TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 799
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 425 TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 484
Query 800 AGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTC 859
|||||||||| |||||||||||| ||||||||| ||| ||||||||||||| ||||| ||
Sbjct 485 AGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCAACACTCCGACTAAAGTAGATGCTC 544
Query 860 TAGTTGCT 867
||||||||
Sbjct 545 TAGTTGCT 552
> Ahg346389 jgi|Araly1|346389|fgenesh1_pg.C_scaffold_4002731
Length=321
Score = 176 bits (95), Expect = 2e-43
Identities = 118/129 (91%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 740 TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 799
||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 167 TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 226
Query 800 AGAAGCCTaaaaagaaaaaaaGAGCAAAGAAAGTCAAG-ACTCCGACTAAAGAAGATGGT 858
|||||||||| |||||||||||| ||||||||| || | ||||||||||||| ||||| |
Sbjct 227 AGAAGCCTAAGAAGAAAAAAAGATCAAAGAAAGGCA-GCACTCCGACTAAAGTAGATGCT 285
Query 859 CTAGTTGCT 867
|||||||||
Sbjct 286 CTAGTTGCT 294
> Ahg950324 jgi|Araly1|950324|scaffold_802211.1
Length=318
Score = 169 bits (91), Expect = 4e-41
Identities = 117/129 (91%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 741 TGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGA 800
|||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 190 TGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGA 249
Query 801 GAAGCCTaaaaagaa-aaaaaGAGCAAAGAAAGTCAAGACTCC-GACTAAAGAAGATGGT 858
||||||||| ||||| ||||||| ||||||||| ||||||||| | |||||| ||||| |
Sbjct 250 GAAGCCTAAGAAGAAGAAAAAGATCAAAGAAAGGCAAGACTCCAG-CTAAAGTAGATGCT 308
Query 859 CTAGTTGCT 867
|||||||||
Sbjct 309 CTAGTTGCT 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33929396130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5