BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01810.1
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484096 jgi|Araly1|484096|fgenesh2_kg.5__88__AT2G01810.1 3232 0.0
Ahg931218 jgi|Araly1|931218|scaffold_303675.1 63.9 5e-09
> Ahg484096 jgi|Araly1|484096|fgenesh2_kg.5__88__AT2G01810.1
Length=2254
Score = 3232 bits (1750), Expect = 0.0
Identities = 2097/2263 (93%), Gaps = 30/2263 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATAACCG--CA-TACGACGCTCTCACGGAGAGACAAAAAGCCCCCAAAGTCCTC 57
||||||||||||| | |||||||||||||||||||||||||| ||||||| || ||
Sbjct 1 ATGGCGATAACCGTAAACGACGACGCTCTCACGGAGAGACAAAAAAACCCCAAAATCATC 60
Query 58 CTTATTAACGATTTTGCCAT--C-TCTTCTTCTTCATCATCACCACCTTTCTTCAACCTC 114
|||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||
Sbjct 61 CTTATTAACGATTTTGCCATCCCTTCTTCTTCTTCATCATCATCACCTTTCATCAACCTC 120
Query 115 GCCGCAACTTTCCGCGACAACATCAGATCGTTCCTCCGTGAATATGCCGAGATTGAAGAT 174
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 121 GCCGCAACTTTCCGCGACAACATCAGATCGTTCCTCCATGAATACGCCGAGATTGAAGAT 180
Query 175 TACACCATCGACGGAGCCACCGTCTCTACTATTTTCCTTGGAAGCCAAGCAAATGGCGTC 234
||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||
Sbjct 181 TACACCATCGACGGAGCCACCGTCTCTACCCTTTTCCTTGGAAACCAAGCAAACGGCGTC 240
Query 235 GTTTTCCCTCTTTACATCATCGAACAACAAATCTCTGATTCTTCTCCAAACCCTCTCTGC 294
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct 241 GTTTTCCCTCTTTATATCATCGAAGAACAAATCTCTGCTTCTTCTCCAAACCCACTCTGC 300
Query 295 GATTTCTGTCGATGCTTTGGTTGGGGTCATCACTATGTAACGAAGAGGAAGTATCATATG 354
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GATTTCTGTCGATGCGTTGGTTGGGGTCATCACTATGTATCGAAGAGGAAGTATCATATG 360
Query 355 ATAATCCCAAACCGTGATGAATGGAATGAGCCATTGAAGAG-AGAAAGCTTGACGCTTTC 413
||||| ||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 361 ATAATACCAAAGATTGATGAATGGAATGAGCCATTGACGAGCA-AAAGCTTGAAGCTTTC 419
Query 414 TTCACATTTGATGCATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGCTTTGTATCAA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCACATTTGATGCATGGTTTGATTCATTGCAATGGTTTTGGTCATTTGCTTTGTATCAA 479
Query 474 CACTGATCTTGATGATCCTAATCACCTCTCTGGTGACCAAATCATGGACTTTTGGGACCG 533
||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||| ||
Sbjct 480 CACTGATATTGATGATCCTGCTTACCTCTCTGGTCACCAAATCATGGACTTTTGGGATCG 539
Query 534 TCTTTGCTCTACTCTCCACACTAGGAAGATATCTTTGGATGATACATCGAAGAAGGGAGC 593
||||||| ||| ||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 540 TCTTTGCACTATTCTTCACACTAGGAAGATTTCTTTGGATGATACATCTAAGAAGGGAGC 599
Query 594 GATGGATCTGAGGCTGCTCCATGGTGTTGCATATGGTCGACCATGGTTTGGGAAATGGGA 653
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATCGATCTGAGGCTGCTCCATGGTGTTGCATATGGTCGACCATGGTTTGGGAAATGGGA 659
Query 654 TTATATGTTTTCTCATGGAAGCTTTGGGGTCAAAAAAGATCTGTATTGGCGAGCTATTCT 713
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 660 TTATATGTTTTCTCATGGAAGCTTTGGGGTCAGAAAAGATCAGTATTGGCGAGCTATTCT 719
Query 714 CACTCTTAGCTCAATAGAAGTTGACAAGAT-ATTGGAAGAATTATCTGGAACAAGTAAAG 772
|||||||||||| ||||||||||||||| | |||| |||| || ||||||||||||||||
Sbjct 720 CACTCTTAGCTCTATAGAAGTTGACAAGGTTATTG-AAGATTTTTCTGGAACAAGTAAAG 778
Query 773 GGAGAGTGATGAAGAAGATCATCGATTTCTACAGAGGATCCACTGAAAGCCCTTTGGCCA 832
||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 779 GGAGAGTGATGAAGACGATCATCGATTTCTACAGAGGATCCAGTGAAACCCCATTGGCCA 838
Query 833 CTCTCTCTGATTTGCTTCGGTTCATGCTTGGTTTCATATCAAAAGCTCCCATTGAGAGAA 892
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |
Sbjct 839 CTCTCTCTGATTTGCTTCGGTTCATGCTTGCTTTCAGATCAAAAGCTCCCATTCAGAGGA 898
Query 893 AGACTGCAATGGCACTAGTAGCAATGTCTTTAGATCATGTTTCATATCCTACTC-TTAGA 951
||||||||||| |||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 899 AGACTGCAATGACACTAGTAGCAATGTCTTTAGATCCTGTTTCATATCCTA-TCCTTAGA 957
Query 952 GCTGATGAGAACAGTGAGGTCTGCACATCCCCTGATCAGGAATCAGATGATAATGGATAT 1011
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 958 GCTGATGAGAACACTGAGGTCTGCACATCCCCTAATCAGGAATCAGATGATAACGGATAT 1017
Query 1012 GAATCTGGCAGAGACACTGTCCTTGATGATCAT-AATACTACAACATCGGGCATAAA-AC 1069
|||||||||||||| |||||||||||||||||| || | || || |||||||||| ||
Sbjct 1018 GAATCTGGCAGAGAAACTGTCCTTGATGATCATGAA-ATTAGAATGGCGGGCATAAAGAC 1076
Query 1070 CTCCTCAGTATTACTCATTTGATGATTTGAGCAGGAGAGAACATTCTAGATGGCCTGGAA 1129
| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1077 C-CCTGAGTATTACTCATTTGATGATTTGGGCAGGAGAGAAAATTCTAGATGGCCTGGAA 1135
Query 1130 GGAGGTTGAATGATGCAGCCCAAGCGGTTCTCAAAGTGTTTAAAGAGCGAAATAGCACCA 1189
||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 1136 GGAGGTTGAATGAGGCAGCCCAAGCAGTTCTCAAAGTGTTTAAAGAGCGAAAAAGTACCA 1195
Query 1190 TTAGTCGCCAAGACCTTCGGGAGGCTGTTAGAAGTAGCATTGGTGATACGGGATTGATTG 1249
||| ||| || || ||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1196 TTACTCGTCATGAGCTTCGACAGGCTGTTAGAAATAGCATTGGTGATACAGGATTGATTG 1255
Query 1250 ATTTCTTGCTCAAACACATTGACAAAGTTCTAATAGGTGACCAGATAGTGCAGAGGTCCA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1256 ATTTCTTGCTCAAACACATTGACAAAGTTCTAATAGGTGACCAGATAGTGCAGAGGTTCA 1315
Query 1310 CAAACCCGAAAAGCAGGATGTTACAGTTCTCCCTCCGGACAATCAATTCCCGTGTTCAAG 1369
||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1316 CAAACTCGAAAAGCCGGATGTTACAGTTCTCCCTCCGGACAATCAATTCCCATGTTCAAG 1375
Query 1370 AGCaaaaacggaaaaagaaaaggaaaGTGAAGCCGCAGGAAACCAGTGAATGCACATCTA 1429
||||| |||||||||||||||||||| |||| |||||||||| || |||||| ||||| |
Sbjct 1376 AGCAAGAACGGAAAAAGAAAAGGAAAATGAAACCGCAGGAAATCAATGAATGGACATCCA 1435
Query 1430 CCACTCCTGGACTGAGTCCGTACGATGATATTCTCTATCTATATCAGAATCTCTTGTTAA 1489
||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 1436 CCACTCCCGGACTGAGTCCGTACGATGACATTCTCTATCTGTATCAGAATATCTTGTTAA 1495
Query 1490 CTTATCCTGATTCAGACTTATACAGTGAAGCGTCTCAGGTTATCTTGAAGTGCAAGAGCT 1549
|| ||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1496 CTCATCTTGATTCAGACACATACAGTGAAGCGTCTCAGATTATCTTGAACTGCAAGAGCT 1555
Query 1550 TTGTAAAAGAATGGTCTTACCAGGAACAAAATCATTTAACAGTTAGCTGCCAGGTTCTTC 1609
|| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct 1556 TTATAAAAGAATGGTCTTACCAGGAACAAAATCCTTTAACAGTTAGCTGCCAAGTTCTGC 1615
Query 1610 CCAATCATGAAGAACTACTCAGAGACTTCACTCGGTTATTACCCCCTGGTGACCTCGTGG 1669
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1616 CCAATCATGAAGAACTACTTAGAGACTTCACACGGTTATTACCGCCTGGTGAACTCGTGG 1675
Query 1670 CTGTTCCGGAAAACGCAACCATCAGAGAACTGAAATCTGCAGCAGAGAAAGTTCTGAGGG 1729
|||||| |||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1676 TTGTTCCTGAAAACGCAACCATCAAAGAACTGAAATTTGCAGCAGAGAAAGCTCTGAGGG 1735
Query 1730 ACACTTACTGCATAACAGAGACATTTGAAGTGTTGGAGATAAGAAACAGGTATCTCGAGA 1789
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1736 ACACTTACTTCATAACGGAGACATTTGAAGTGTTGGAGATAAGAAACAGGTATCTGGAGA 1795
Query 1790 AGCTAGACGACAACGTGAG-TCTAAAATCACAAGGGAATACAGAGTTTATGGTGAAAGGG 1848
||||||| |||||| || | ||||||||||||| ||| |||||||||| |||||||||||
Sbjct 1796 AGCTAGATGACAACTTG-GCTCTAAAATCACAAAGGATTACAGAGTTTCTGGTGAAAGGG 1854
Query 1849 TTTGGTCTGGACATAGGCACAGAGTTAAGGTATGAAGGCGGATTTGATGACTGGACCGTT 1908
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1855 TTTGGTCTGGACATAGGCACAGAGTTAAGGTATGAAGGTGGTTTTGATGACTGGACTGTT 1914
Query 1909 GACTGCAAATGCGGAGCTAGAGATGATGATGGTGAGAGAATGGTGGCTTGTGATGCTTGC 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GACTGCAAATGCGGAGCTAGAGATGATGATGGTGAGAGAATGGTGGCTTGTGATGCTTGC 1974
Query 1969 AAGGTTTGGCACCACACACTTTGCAATTCCATCGAAGACGATGAAGCTGTGCCCTCCGTG 2028
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1975 AAGGTTTGGCACCACACACTCTGCAATTCCATCGAAGACGATGAAGCTGTGCCCTCTGTG 2034
Query 2029 TTTCTCTGTAACATGTGTTATGGAGATAGCTTGAGATCCAAGAAACGCAACCTCAGCATT 2088
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2035 TTTCTCTGTAACAGGTGTTATGAAGATAGCTTGAGATCCAAGAAACGCAACCTCAGCATT 2094
Query 2089 CGCTAGCCCTAGCTTGCGCAAAAAGTCAGCTTGTGTTGCAGGAGATTATATATCACCCAT 2148
|||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||
Sbjct 2095 CGCTAGCCCTAGCTTGCGCAGAAAGCCACCTTGTGTTGCAGGAGATTATATATCATCCAT 2154
Query 2149 TATTATGGTCAAAA-CT------T-ACCAACCATAGCCATAGATCTAA-TTTTATAATTA 2199
|||| ||||||||| || | |||||||||||||||||| |||| |||||| || |
Sbjct 2155 TATTGTGGTCAAAAACTCAAAACTTACCAACCATAGCCATAGA-CTAAATTTTATGATGA 2213
Query 2200 AGACTTTTTTGGCATAAAATTTTATCTGCATAAATATATGTTT 2242
|||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 2214 AGACTTTT--GGCATAAAAATTTATCTGCATCAATATATGTTT 2254
> Ahg931218 jgi|Araly1|931218|scaffold_303675.1
Length=427
Score = 63.9 bits (34), Expect = 5e-09
Identities = 55/65 (85%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 1923 AGCTAGAGATGATGATGGTGAGAGAATGGTGGCTTGTGATGCT-TGCAAGGTTTGGCACC 1981
|||||||||||||||||||||||||||| | || ||||||| | || || | ||||| |
Sbjct 73 AGCTAGAGATGATGATGGTGAGAGAATGATAGCATGTGATG-TATGTGAGATATGGCAGC 131
Query 1982 ACACA 1986
|||||
Sbjct 132 ACACA 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87417112275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5