BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01818.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484097 jgi|Araly1|484097|fgenesh2_kg.5__89__AT2G01818.1 1254 0.0
> Ahg484097 jgi|Araly1|484097|fgenesh2_kg.5__89__AT2G01818.1
Length=868
Score = 1254 bits (679), Expect = 0.0
Identities = 787/837 (94%), Gaps = 16/837 (2%)
Strand=Plus/Plus
Query 75 TTTTTGGATGATTTTGATCGGAGAAATATAAAATCTTCTCATCTGATCTATCAAAGGAAC 134
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 47 TTTTTGGATGATTTTGATCGGAGAAATATAAAATCTGCTCATTTGATCTATCAAAGGAAC 106
Query 135 TCAGTTTCTCATACCAAAATGAATCTGAGTGAGAAGAGAAGAAGTGAAGAAGTTTGGATT 194
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 107 TCAGTTTCTCATACCAAAATGAATCTGAGTGAGAAGAGAAGAAGTGAAGAAGATTGGATT 166
Query 195 GAAACACTACTGAACTCAGAGTTCTTTGGGATATGTATGAATCATAAGTATCTTAGAAAG 254
|| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 167 GATACACTATTGAACTCAGAGTTCTTTGGGATATGTATGAATCATAAGTATCTTCGAAAG 226
Query 255 AACGAGAAGAATGTGTTTTGCATTGATTGTAATGTGGAAATATGCAGACATTGTTGTAAC 314
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 227 AACGAGAAAAATGTGTTTTGCATTGATTGTAATGTGGAAATCTGCAGACATTGTTGTAAC 286
Query 315 ACAGTTACAGATTCTCATTTCCTCCATCGTCGTCTTCAGATCTGCAAATACGTTTACCAA 374
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 287 ACAGTTACAGATTCACATTACCTCCATCGTCGTCTTCAGATCTGCAAATACGTTTATCAA 346
Query 375 GATGTTATTCGTCTCCTCGAAATCCAAAACTACTTCGACTGTTCCGAGATTCAGACATAT 434
|||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 347 GATGTTCTTCGTCTCTTCGATATCCAACACTACTTCGACTGTTCCGAGATTCAGACATAT 406
Query 435 AAAATAAATGGAGAGAAGGCAATACATTTGAATTCAAGGCCACAAGCAAAAGATGCAAGA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AAAATAAATGGAGAGAAGGCAATACATTTGAATTCAAGGCCACAAGCAAAAGATGCAAGA 466
Query 495 CCTTCAACAAAAGCCAAGAATGGTGCTTCATGTGTGACTTGTAAAAGATATATTCAGGAT 554
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 467 CCTTCAACAAAATCCAAGAATGGTGCTTCATGTGTGACTTGTAAAAGATATATTCAAGAT 526
Query 555 CATCCTAATCTTTTTTGCTCTATCTCCTGCAAGATTTCAACTCCTTCAAAAAAGCATAAA 614
| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 527 CGTCCTAATCGATTTTGCTCTATCTCCTGCAAGATATCAACTCCTTCAAAAAAGCATAAA 586
Query 615 TTTTGTTTTTCTCCAAAACTAGAACAGAGTGTTTTGGAGAAAGAACACTCTACTCAAGAA 674
|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 587 TTTTGTTTTTCTCCAAAATTGGAACAGAGTGTTTTGGAGAAAGAACACTCTAATCAAGAA 646
Query 675 GGAAGCTTAGAAGaaaaaaaaTCGTGCACATCGTCCCTCACTGATGTTTCAGAAGATTCT 734
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GAAAGCTTAGAAGAAAAAAAATCGTGCACATCGTCCCTCACTGATGTTTCAGAAGATTCT 706
Query 735 GAAGTTTTATTGAGTGATTTTTCATTTAGACCACTCTTGAGAATACTCAAGAGAAAAGGA 794
|||||||||||| || |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 707 GAAGTTTTATTGTGTAATTTTTCATTGAGACCACTCATGAGAATACTCAAGAGAAAAGGA 766
Query 795 ATTTCTCGAAGATCTCCT-TTCTATTGAtttttttttttCTTTGGATTTGTCATCAAAGC 853
|||||||||||||||||| || |||||| ||||||| | | ||||||| |
Sbjct 767 ATTTCTCGAAGATCTCCTCTT-TATTGAATTTTTTT-------G--T----CATCAAA-C 811
Query 854 CATACATTATGTGTATTTTATCTATGAAAAAGATATTATATCGGCTATCAATATTAT 910
||||||||||||||||||||| | | |||||||||||||||||| ||||||||||||
Sbjct 812 CATACATTATGTGTATTTTATTTTTAAAAAAGATATTATATCGGGTATCAATATTAT 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5