BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01818.1 Length=916 Score E Sequences producing significant alignments: (Bits) Value Ahg484097 jgi|Araly1|484097|fgenesh2_kg.5__89__AT2G01818.1 1254 0.0 > Ahg484097 jgi|Araly1|484097|fgenesh2_kg.5__89__AT2G01818.1 Length=868 Score = 1254 bits (679), Expect = 0.0 Identities = 787/837 (94%), Gaps = 16/837 (2%) Strand=Plus/Plus Query 75 TTTTTGGATGATTTTGATCGGAGAAATATAAAATCTTCTCATCTGATCTATCAAAGGAAC 134 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 47 TTTTTGGATGATTTTGATCGGAGAAATATAAAATCTGCTCATTTGATCTATCAAAGGAAC 106 Query 135 TCAGTTTCTCATACCAAAATGAATCTGAGTGAGAAGAGAAGAAGTGAAGAAGTTTGGATT 194 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 107 TCAGTTTCTCATACCAAAATGAATCTGAGTGAGAAGAGAAGAAGTGAAGAAGATTGGATT 166 Query 195 GAAACACTACTGAACTCAGAGTTCTTTGGGATATGTATGAATCATAAGTATCTTAGAAAG 254 || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 167 GATACACTATTGAACTCAGAGTTCTTTGGGATATGTATGAATCATAAGTATCTTCGAAAG 226 Query 255 AACGAGAAGAATGTGTTTTGCATTGATTGTAATGTGGAAATATGCAGACATTGTTGTAAC 314 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 227 AACGAGAAAAATGTGTTTTGCATTGATTGTAATGTGGAAATCTGCAGACATTGTTGTAAC 286 Query 315 ACAGTTACAGATTCTCATTTCCTCCATCGTCGTCTTCAGATCTGCAAATACGTTTACCAA 374 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 287 ACAGTTACAGATTCACATTACCTCCATCGTCGTCTTCAGATCTGCAAATACGTTTATCAA 346 Query 375 GATGTTATTCGTCTCCTCGAAATCCAAAACTACTTCGACTGTTCCGAGATTCAGACATAT 434 |||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||| Sbjct 347 GATGTTCTTCGTCTCTTCGATATCCAACACTACTTCGACTGTTCCGAGATTCAGACATAT 406 Query 435 AAAATAAATGGAGAGAAGGCAATACATTTGAATTCAAGGCCACAAGCAAAAGATGCAAGA 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 AAAATAAATGGAGAGAAGGCAATACATTTGAATTCAAGGCCACAAGCAAAAGATGCAAGA 466 Query 495 CCTTCAACAAAAGCCAAGAATGGTGCTTCATGTGTGACTTGTAAAAGATATATTCAGGAT 554 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 467 CCTTCAACAAAATCCAAGAATGGTGCTTCATGTGTGACTTGTAAAAGATATATTCAAGAT 526 Query 555 CATCCTAATCTTTTTTGCTCTATCTCCTGCAAGATTTCAACTCCTTCAAAAAAGCATAAA 614 | |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 527 CGTCCTAATCGATTTTGCTCTATCTCCTGCAAGATATCAACTCCTTCAAAAAAGCATAAA 586 Query 615 TTTTGTTTTTCTCCAAAACTAGAACAGAGTGTTTTGGAGAAAGAACACTCTACTCAAGAA 674 |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| Sbjct 587 TTTTGTTTTTCTCCAAAATTGGAACAGAGTGTTTTGGAGAAAGAACACTCTAATCAAGAA 646 Query 675 GGAAGCTTAGAAGaaaaaaaaTCGTGCACATCGTCCCTCACTGATGTTTCAGAAGATTCT 734 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 647 GAAAGCTTAGAAGAAAAAAAATCGTGCACATCGTCCCTCACTGATGTTTCAGAAGATTCT 706 Query 735 GAAGTTTTATTGAGTGATTTTTCATTTAGACCACTCTTGAGAATACTCAAGAGAAAAGGA 794 |||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 707 GAAGTTTTATTGTGTAATTTTTCATTGAGACCACTCATGAGAATACTCAAGAGAAAAGGA 766 Query 795 ATTTCTCGAAGATCTCCT-TTCTATTGAtttttttttttCTTTGGATTTGTCATCAAAGC 853 |||||||||||||||||| || |||||| ||||||| | | ||||||| | Sbjct 767 ATTTCTCGAAGATCTCCTCTT-TATTGAATTTTTTT-------G--T----CATCAAA-C 811 Query 854 CATACATTATGTGTATTTTATCTATGAAAAAGATATTATATCGGCTATCAATATTAT 910 ||||||||||||||||||||| | | |||||||||||||||||| |||||||||||| Sbjct 812 CATACATTATGTGTATTTTATTTTTAAAAAAGATATTATATCGGGTATCAATATTAT 868 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33967519047 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5