BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01820.1
Length=3065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484098 jgi|Araly1|484098|fgenesh2_kg.5__90__AT2G01820.1 4475 0.0
> Ahg484098 jgi|Araly1|484098|fgenesh2_kg.5__90__AT2G01820.1
Length=3036
Score = 4475 bits (2423), Expect = 0.0
Identities = 2822/3012 (94%), Gaps = 37/3012 (1%)
Strand=Plus/Plus
Query 1 ATGTC-AAATTCCCATTTGGGTACTCTCTGTTTCATCATCTCTTTACTGGGTTTGGCCAA 59
||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 ATGTCGAAA-TCCCATTTGGGTACTCTCTGTTTCTTCATCTCTTTACTGGGTTTTATCAA 59
Query 60 TTTCTCACTTTCTCAAACCGGTCTCGATGATTCGACTATGCAATCTCTCAAATCAAGTCT 119
| ||||| ||||||||| |||| ||||||||||||||||| || ||||||||||||||||
Sbjct 60 TCTCTCAGTTTCTCAAAACGGTGTCGATGATTCGACTATGGAAGCTCTCAAATCAAGTCT 119
Query 120 GAATCTTACATCAGACGTCGATTGGTCTAACCCTAACCCTTGTAAATGGCAATCTGTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 120 GAATCTTACATCAGACGTCGATTGGTCTAACCCTAACCCTTGTAAATGGGAATCTGTTGA 179
Query 180 ATGCGATGGAAGTAATCGTGTTACTAAGATTCAGCTTAAACAAAAAGGGATTCGTGGAAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATGCGATGGAAGTAATCGTGTTACTAAGATTCAGCTTAAACAAAAAGGGATTCGTGGAAC 239
Query 240 TCTTCCTACTAATCTTCAGAGTCTCTCTGAATTGGTTATTCTCGAGCTTTTTCTCAATCG 299
|||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 240 TCTTCCTACTGATCTTCAGAAACTCTCTGAATTGGTTGTTCTTGAGCTTTTTCTCAATCG 299
Query 300 TATCTCTGGTCCTATTCCTGATCTCTCTGG-CTTATCTCGTTTACAGACTCTGAATCTAC 358
||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 300 AATCTCTGGTCCCATTCCTGATCTCTCTGGTCTTA-GTCGTTTACAGACTCTCAATCTAC 358
Query 359 ACGACAATCT-TTTTACCTCTGTACCGAAGAATCTCTTCTCTGGTATGAGTTCTCTTCAA 417
|||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 ACGACAATCTCTTTGA-TTCTGTACCTAAGAATCTCTTCTCTGGTATGAGTTCTCTTCAA 417
Query 418 GAAATGTATCTCGAGAACAATCCGTTTGATCCTTGGGTAATTCCAGACACCGTTAAAGAA 477
||| ||||||||||||||||||||||| |||||||| |||||||||| || ||||||||
Sbjct 418 GAAGTGTATCTCGAGAACAATCCGTTTAATCCTTGGCAAATTCCAGACTCCATTAAAGAA 477
Query 478 GCTACGTCTCTGCAGAATCTAACTCTCTCCAATTGCAGCATTATTGGAAAGATCCCAGAT 537
||||||||||| |||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 478 GCTACGTCTCTTCAGAATCTTACACTCTCCAATTGCAGCATTTTTGGAAAGATCCCAGAT 537
Query 538 TTCTTCGGTTCTCAGTCACTTCCGAGCT-TGACGAATCTGAAACTATCTCAGAATGGTTT 596
||||| |||||||||||||||||||| | |||||||||||||||| ||||||||| ||||
Sbjct 538 TTCTTTGGTTCTCAGTCACTTCCGAG-TCTGACGAATCTGAAACTGTCTCAGAATCGTTT 596
Query 597 AGAAGGAGAGTTACCGATGAGTTTTGCTGGTACTTCGATTCAGTCTCTGTTCTTGAATGG 656
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 597 ACAGGGAGAGTTACCGGTGAGTTTTGCTGGTACTTCGCTTCAGTCTCTGTTCTTGAATGG 656
Query 657 TC-------AGA--AGCTTAATGGATCGATCTCGGTATTGGGGAACATGACTTCGCTCGT 707
|| ||| |||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 657 TCAAGTGGGAGAGCAGCTTAATGGATCGATCTCGATATTGAGGAATATGACTTCGCTCGT 716
Query 708 TGAGGTTTCTCTTCAAGGAAATCAGTTCTCAGGTCCAATTCCTGATCTCTCTGGTTTGGT 767
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || |
Sbjct 717 TGAGGTTTCTCTTCAAGGAAATAAGTTCTCAGGTCCGATTCCTGATCTCTCTGGTCTGTT 776
Query 768 ATCTCTACGTGTGTTTAATGTTAGAGAGAATCAGCTCACTGGTGTTGTTCCACAGTCTTT 827
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 ATCTCTCCGTGTGTTTAATGTTAGAGAGAATCAGCTTACTGGTGTTGTTCCACAGTCTTT 836
Query 828 GGTTAGTTTGAGTTCGCTTACTACTGTGAATTTAACTAATAATTAT-CTTCAAGGACCGA 886
| || |||||| |||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 837 GATTCGTTTGAATTCGCTTACTACTGTGAATTTAACCAATAATT-TGCTTCAAGGACCGA 895
Query 887 CTCCGTTGTTTGGCAAATCCGTTGGTGTTGATATAGTCAACAACATGAATAGCTTTTGTA 946
||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 896 CTCCGTTGTTTGGCAAATCCGTTGGTGTTGATATATTCAACAACACGAATAGTTTTTGTA 955
Query 947 CTAATGTAGCTGGTGAGGCTTGTGATCCTCGTGTGGATACTTTGGTATCTGTAGCTGAAT 1006
||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 956 CTAGTATAGCTGGTGAGGCTTGTGATCCTCGTGTGGATAATTTGGTATCTATAGCTGAAT 1015
Query 1007 CATTTGGATATCCAGTGAAGCTTGCGGA-AAGTTGGAAAGGAAACAATCCTTGTGTTAAC 1065
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1016 CATTTGGATATCCAGTGAAGCTTGC-GAGTAGTTGGAAAGGAAACAATCCGTGTGTTAAC 1074
Query 1066 TGGGTTGGGATTACTTGTTCTGGAGGTAACATTACGGTTGTTAATATGAGGAAACAGGAT 1125
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1075 TGGGTTGGGATTACTTGTTCTGGAGGTAACATTACGGTGGTTAATCTGAGGAAACAGGAT 1134
Query 1126 CTCTCGGGTACGATTTCTC-CGAGTTTAGCTAAGCTTACTTCATTGGAGACTATCAATCT 1184
|| ||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1135 CTTTCGGGTACGATATC-CGCGAGTTTAGCTAACCTTACTTCATTGGAGACTATCAATCT 1193
Query 1185 TGCTGATAATAAACTCTCCGGGCATATACCTGA-TGAGCTTACCACATTGTCTAAGCTTA 1243
| |||||||| ||||||| |||| |||||| || |||||||||||||||| ||||||||
Sbjct 1194 TTCTGATAATGAACTCTCTGGGCCTATACC-GACTGAGCTTACCACATTGCCTAAGCTTC 1252
Query 1244 GGTTACTTGATGTGTCTAACAACGATTTTTATGGAATAC-CGCCAAAGTTTCGGGATACT 1302
|| |||||||||||||||||||||| | |||||| | | ||||||||||| ||| |||
Sbjct 1253 GGACACTTGATGTGTCTAACAACGATCTATATGGAGT-CGTGCCAAAGTTTCCGGACACT 1311
Query 1303 GTGAC-TTTGGTGACTGAAGGGAACGCTAACATGGGGAAGAATGGACCTAACAAAACGAG 1361
|| || |||||||| ||||||||||| ||| || || ||||| ||||||| | | ||||
Sbjct 1312 GT-ACATTTGGTGATTGAAGGGAACGTTAATATCGGAAAGAAAGGACCTATCTCACCGAG 1370
Query 1362 TGATGCTCCTGGAGCTTCACCAGGAAGTAAACCTTCAGGAGGAAGTGATGGCAGTGAAAC 1421
|| | |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1371 TGGTTCTCCTGGAGCTTCACCTGGAAGTAAACCTTCAGGAGGAAGTGGTGGCAGTGAAAC 1430
Query 1422 TTCTAAGAAATCAAGCAATGTCAAGATTAttgttcctgtggttggtggggttgttggtgc 1481
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1431 TTCTAAGAAGTCAAGCAATGTCAAGATTATTGTTCCTGTGGTTGGTGGAGTTGTTGGTGC 1490
Query 1482 attgtgtttggttgggcttggtgtgtgtCTTTATGCGAAGAAAAGGAAGCGACCTGCTAG 1541
||||||| |||||||||| || ||||||||||| ||||||||||||||| ||||||||||
Sbjct 1491 ATTGTGTCTGGTTGGGCTCGGCGTGTGTCTTTACGCGAAGAAAAGGAAGAGACCTGCTAG 1550
Query 1542 AGTTCAAAGTCCAAGCAGCAACATGGTTATTCATCCGCATCATTCGGGTGACAACGATGA 1601
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1551 AGTTCAGAGTCCAAGCAGCAACATGGTTATTCATCCGCATCACTCGGGTGACAACGATGA 1610
Query 1602 CATTAAACTCACTGTTGCAGCTTCTAGTCTTAACAGTGGTGGAGGAAGTGATAGCTACAG 1661
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1611 CATTAAACTCACTGTTGCAGCTTCTAGTCTTAACAGTGGCGGAGGAAGTGATAGCTACAG 1670
Query 1662 TCACAGCGGAAGTGCAGCGAGTGATATTCACGTTGTTGAAGCTGGGAACTTGGTTATATC 1721
||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||
Sbjct 1671 TCACAGCGGAAGTGCGGCAAGCGATATTCACGTTGTGGAAGCTGGGAACTTGGTTATATC 1730
Query 1722 GATACAGGTCTTGAGGAATGTGACGAATAACTTCAGCGAAGAGAATATTCTCGGGAGAGG 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 GATACAGGTCTTGAGGAATGTGACGAATAACTTCAGCGAAGAGAATATTCTCGGGAGAGG 1790
Query 1782 TGGTTTCGGGACAGTTTACAAAGGCGAACTCCACGATGGAACAAAAATAGCTGTGAAGAG 1841
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1791 TGGTTTCGGGACAGTTTACAAAGGCGAACTCCACGATGGAACGAAAATAGCTGTGAAGAG 1850
Query 1842 AATGGAGTCTTCGGTTGTGAGTGATAAGGGACTTACTGAGTTTAAATCTGAGATCACTGT 1901
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AATGGAGTCCTCGGTTGTGAGTGATAAGGGACTTACTGAGTTTAAATCTGAGATCACTGT 1910
Query 1902 TCTGACTAAAATGCGTCATCGTCATCTCGTTGCGCTTCTCGGTTACTGCCTTGACGGGAA 1961
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1911 TCTGACTAAAATGCGCCATCGTCATCTCGTTGCGCTTCTTGGGTACTGCCTTGACGGGAA 1970
Query 1962 CGAGAGGCTTCTTGTCTACGAGTACATGCCACAGGGGACACTAAGTCAGCATTTGTTCCA 2021
||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| |||| ||
Sbjct 1971 CGAGAGGCTCCTTGTCTATGAGTACATGCCTCAGGGGACACTGAGTCAGCATCTGTTTCA 2030
Query 2022 CTGGAAAGAGGAAGGGCGAAAACCGTTAGACTGGACTAGACGGCTGGCGATTGCATTGGA 2081
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2031 TTGGAAAGAGGAAGGGAGAAAACCACTAGACTGGACTAGACGGCTGGCGATTGCATTGGA 2090
Query 2082 TGTAGCTCGAGGTGTCGAGTATCTGCACACACTTGCGCATCAGAGCTTTATCCATAGGGA 2141
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2091 TGTAGCTCGAGGTGTCGAGTATCTGCACACACTTGCGCATCAGAGCTTCATCCATAGGGA 2150
Query 2142 TCTAAAGCCATCAAACATCCTTCTTGGTGATGATATGCGCGCTAAAGTCTCTGACTTTGG 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 TCTAAAGCCATCAAACATCCTTCTTGGTGATGATATGCGCGCTAAAGTCTCTGACTTTGG 2210
Query 2202 GTTAGTACGTTTAGCCCCTGATGGCAAATACTCCATTGAGACTCGAGTAGCTGGGACTTT 2261
|||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2211 GTTAGTCCGTTTAGCCCCTGATGGCAAATACTCCATCGAGACCCGAGTCGCTGGGACTTT 2270
Query 2262 CGGATACCTTGCCCCAGAATACGCAGTGACGGGAAGAGTGACGACCAAGGTAGACATTTT 2321
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 2271 CGGATACCTTGCCCCAGAATACGCAGTGACTGGAAGAGTGACGACGAAAGTAGACATTTT 2330
Query 2322 CAGCCTTGGGGTCATACTTATGGAGCTAATCACTGGTCGTAAAGCCCTAGACGAGACGCA 2381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2331 CAGCCTTGGGGTCATACTTATGGAGCTAATCACTGGTCGTAAAGCCCTAGACGAGACGCA 2390
Query 2382 ACCCGAAGACAGCGTCCATCTAGTCACATGGTTCCGTCGGGTAGCAGCCAGCAAAGACGA 2441
||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 2391 ACCCGAAGACAGCGTTCATCTAGTCACATGGTTCCGAAGGATAGCAGCCAGCAAAGACGA 2450
Query 2442 AAATGCCTTCAAAAACGCAATAGACCCAAACATCAGCCTCGACGACGATACCGTAGCCAG 2501
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 2451 GAATGCCTTTAAAAACGCAATTGACCCAAACATCAGCCTCGACGACGATACCTTAGCCAG 2510
Query 2502 TATTGAAAAAGTCTGGGAGCTTGCTGGTCATTGCTGTGCCCGTGAGCCTTACCAAAGACC 2561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2511 TATTGAAAAAGTCTGGGAGCTTGCTGGTCATTGCTGTGCCCGTGAGCCTTACCAAAGACC 2570
Query 2562 TGACATGGCTCACATCGTTAACGTCCTTTCTTCACTCACCGTCCAATGGAAACCAACTGA 2621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2571 TGACATGGCTCACATCGTTAACGTCCTTTCTTCACTCACCGTCCAATGGAAACCAACTGA 2630
Query 2622 GACCGACCCTGATGACGTCTATGGGATAGACTACGATATGCCGCTTCCGCAGGTGCTTAA 2681
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2631 GACCGACCCAGATGACGTCTACGGGATAGACTACGATATGCCGCTTCCGCAAGTGCTTAA 2690
Query 2682 GAAATGGCAAGCTTTCGAGGGACTAAGCCAGACCGCGGATGACTCGGGATCTTCGTCTTC 2741
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2691 GAAATGGCAAGCTTTCGAGGGACTTAGCCAGACCGCGGATGACTCGGGTTCTTCGTCTTC 2750
Query 2742 GGCTTATGGAAGCAAAGACAATACGCAGACAAGTATCCCAACTCGCCCATCTGGATTTGC 2801
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2751 GGCTTATGGAAGCAAAGACAATACACAGACAAGTATCCCAACTCGTCCATCTGGATTTGC 2810
Query 2802 TGACTCGTTCACTTCTGTGGATGGACGTTGAAAAAATCAAGATTGCGTAAAACGTTTTAG 2861
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2811 TGACTCGTTCACTTCTGTGGATGGACGTTGAAGAAATCAAGATTGCGTAAAACGTTTTAG 2870
Query 2862 TAGAAGAAGAAGATGAAGCATTGTGTGATAAATCTCTCTCTCGCTCTC-C-Ct-tttttt 2918
|||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||
Sbjct 2871 TAGAAGAAGAAGATGAAGCATTGTGTGATAAATCTCTCTCTCTCTCTCTCTCTCTTTTTT 2930
Query 2919 GCTTTT-CTCTGAAGCATATTTACTTATGACTTCGTTTTTATCTACTGCAAGCTTTTGGT 2977
|||| | ||||||||| || ||||||||||||||||||| ||||||||| ||||||||
Sbjct 2931 T-TTTTGC-CTGAAGCAT-TT-ACTTATGACTTCGTTTTTACCTACTGCAAACTTTTGGT 2986
Query 2978 TAGTGTATTTAT 2989
||||||||||||
Sbjct 2987 TAGTGTATTTAT 2998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115756254555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5