BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01850.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484102 jgi|Araly1|484102|fgenesh2_kg.5__94__AT2G01850.1 1565 0.0
Ahg471659 jgi|Araly1|471659|fgenesh2_kg.1__1613__AT1G14720.1 652 0.0
> Ahg484102 jgi|Araly1|484102|fgenesh2_kg.5__94__AT2G01850.1
Length=1282
Score = 1565 bits (847), Expect = 0.0
Identities = 1044/1137 (92%), Gaps = 22/1137 (2%)
Strand=Plus/Plus
Query 175 AATGGAGACTCTGAGTCGTTTATTGGTTTTCATGTCTCTGTTTTCCGGTTTAGTTTCTGG 234
|||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 131 AATGGAAACTTTGACTCGTTTATTGGTTTTCATGACTCTGTTTTCCGGTTTAGTTTCTGG 190
Query 235 ATTTGCTCTGCAAAATCTTCCAATCACATCTTTTGAAGAAAGTTACACTCAACTTTTTGG 294
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 191 ATTTGCTCTGCAAGACCTTCCAATCACATCTTTTGAAGAAGGTTACACTCAACTTTTTGG 250
Query 295 TGACAAGAACTTATTTGTTCATCAAGATGGCAAATCTGTCCGGTTAACGCTCGATGAAAG 354
||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 251 TGATAAGAACTTGTTTGTTCATAAAGATGGCAAATCTGTCCGGTTAACACTCGATGAAAG 310
Query 355 AACCGGTTCCGGTTTTGTTTCAAATGAT-TATTACTTGCATGGATTCTTCAGTGCTTCAA 413
||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||| |
Sbjct 311 AACCGGTTCTGGTTTTGTCTCAAATGATCT-TTACTTGCATGGATTCTTCAGTGCTTCTA 369
Query 414 TTAAATTACCTTCTGATTATACAGCTGGAGTTGTTGTTGCCTTTTATATGTCTAATGGAG 473
| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 370 TCAAATTACCTTCTGATTATTCAGCTGGTGTTGTTGTTGCCTTTTATATGTCAAATGGAG 429
Query 474 ATATGTATGAGAAGAATCATGATGAGATAGATTTTGAGTTTCTTGGTAACATTAGAGAAA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 430 ATATGTATGAGAAGAATCATGATGAGATAGATTTTGAGTTTCTTGGTAACATTAGAGGAA 489
Query 534 AAGAATGGAG-AGTTCAGACAAACATTTACGGTAATGGAAGTACTCATTCAGGAAGAGAA 592
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 490 AAGAATGGAGGA-TTCAGACAAACATTTACGGTAATGGAAGTACTCATTTAGGAAGAGAA 548
Query 593 GAGAGATATAATCTCTGGTTTGATCCTACTGAAGATTTTCATCAATACAGTATCCTCTGG 652
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 549 GAGAGATATAATCTTTGGTTTGATCCAACTGAAGATTTTCATCAATACAGTATCCTCTGG 608
Query 653 TCTGATTCTCACATCATATTCTTTGTAGACAATGTTCCTATTAGAGAGGTCAAACGTACT 712
|||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 609 TCTGATTCTCACATCATATTCTTTGTGGACAATGTTCCGATCAGAGAGGTCAAACGTACG 668
Query 713 GCGGAAATGGGTGGTCACTTTCCATCAAAGCCGATGTCTCTCTACACAACAATATGGGAC 772
||| |||||||||| ||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 669 GCGTCAATGGGTGGTGACTTTCCGTCTAAGCCGATGTCACTCTACACAACCATATGGGAC 728
Query 773 GGTTCTAAATGGGCAACTAACGGTGGAAAGTACGGTGTAAACTACAAATATGCGCCTTAC 832
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 729 GGTTCTAAATGGGCGACTAACGGTGGAAAGTACGGTGTAAACTACAAATATGCACCTTAC 788
Query 833 ATTGCGCGGTTCTCGGATCTAGTCCTGCACGGCTGCCCCGTGGACCCTATCGAGCAGTTT 892
||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 789 ATTGCGCGGTTTTCTGATCTAGTCCTTCACGGCTGCCCCGTGGACCCAATCGAGCAGTTT 848
Query 893 CCGAGGTGCGATGAAGGCGCGGCTGAGGATATGCGTGCGGCGCAAGAGATTACTCCTTCA 952
||||||||||||||||| || ||||||||||| |||||||| || |||||||| || ||
Sbjct 849 CCGAGGTGCGATGAAGGAGCAGCTGAGGATATCCGTGCGGCACAGGAGATTACCCCGTCT 908
Query 953 CAAAGGA-GTAAAATGGATGTTTTCAGACGGAGACTCATGACATATTCATATTGCTATGA 1011
|| |||| | ||||||||||||||||| |||| || |||||| ||||| |||||||||||
Sbjct 909 CAGAGGAAG-AAAATGGATGTTTTCAGGCGGAAACACATGACTTATTCGTATTGCTATGA 967
Query 1012 TCGGGCTAGGTACAATGTTGCTTTATCGGAGTGTGTGGTGAATCCCGCTGAGGCTCAAAG 1071
|||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 968 TCGGACAAGGTACAAGGTTGCTTTATCGGAGTGTGTGGTGAATCCCGCAGAGGCTCAAAG 1027
Query 1072 GCTTAGGGTTTATGATCCGGTCAGATTTGGCGGCATTCCGAGGCGCCACCGCAATGGAAA 1131
|||||| ||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 1028 GCTTAGAGTTTATGATCCAGTCACATTTGGCGGAATTCCTAGGCGCCACCGCAATGGAAA 1087
Query 1132 GCACCGGAGCAAGAGAAGCCGGGTTGATGGAACCGAGTCGATATGATAACATATATAGGC 1191
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1088 GCACCGGAGCAAGAGAAGCCGGGTTGATGGAACAGAGTCGATATGATAACATATATGGGT 1147
Query 1192 AAAATAGTATGGGTGAGATTTGGGGGTTCTATAATAAGTCCATTATTTTGGTTATTTATG 1251
| || | ||| || ||| ||||||||||||||||| || |||||||||||||
Sbjct 1148 GAGAT--T-TGG---AG----GGG--TTCTATAATAAGTCCAT-ATATTGGTTATTTATG 1194
Query 1252 ATTCAATGCATTTTCACATATAGAGGAGG-CATTTTTGTCATTTGTTAG-TTGTATA 1306
|||||||||||||||| || |||||| || ||||||||||||||||| | |||||||
Sbjct 1195 ATTCAATGCATTTTCAGATTTAGAGGGGGGCATTTTTGTCATTTGTT-GCTTGTATA 1250
> Ahg471659 jgi|Araly1|471659|fgenesh2_kg.1__1613__AT1G14720.1
Length=1196
Score = 652 bits (353), Expect = 0.0
Identities = 775/975 (79%), Gaps = 44/975 (5%)
Strand=Plus/Plus
Query 190 TCG-TTTATTGGTTTTCATGTCTCTGTTTTCCGGTTTAGTTTCTGGATTTGCTCTGCAAA 248
||| ||| || ||||||||||| || || ||||||| ||||||||||||||||| ||||
Sbjct 153 TCGATTT-TTAGTTTTCATGTCACTCTTCACCGGTTTGGTTTCTGGATTTGCTCTACAAA 211
Query 249 ATCTTCCAATCACATC-TTTTGAAGAAAGTTACACTCAACTTTTTGGTGA-CAAGAA-CT 305
| ||||| | | | | || || ||| ||||||| || || |||||||| ||| || ||
Sbjct 212 AGCTTCCTTTTATA-CAGTTCGACGAAGGTTACACACATCTCTTTGGTGACCAA-AATCT 269
Query 306 TATTTGTTCATCA-AGATGGCAAATCTGTCCGGTTAACGCTCGATGAAAGAACCGGTTCC 364
| ||||||| || |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 270 GA-TTGTTCA-CAGAGATGGAAAATCTGTCCGGTTAACGCTCGATGAGAGAACCGGTTCT 327
Query 365 GGTTTTGTTTCAAATGATTA-TTACTTGCATGGATTCTTCAGTGCTTCAATTAAATTACC 423
|| ||||| |||||||| | |||||||||||| ||||||||| |||| || ||||||||
Sbjct 328 GGATTTGTCTCAAATGA-CATTTACTTGCATGGCTTCTTCAGTTCTTCTATCAAATTACC 386
Query 424 TTCTGATTA-TACAGCTGGAGTTGTTGTTGCCTTTTATATGTCTAATGGAGA-TATGTAT 481
| ||||| | | || ||||||||| | ||||||||| | || |||||||| | |||||
Sbjct 387 AGCAGATTACT-CTGCAGGAGTTGTTATCGCCTTTTATCTATCAAATGGAGACT-TGTAT 444
Query 482 GAGAAGAATCATGATGAGATAGATTTTGAGTTTCTTGGT-AACATTAGAGAAAAAGAATG 540
||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||
Sbjct 445 GAGAAGAATCATGATGAGATAGATTTTGAGTTT-TTGGGGAATATTAGAGGCAAAGAATG 503
Query 541 GAG-AGTTCAGACAAACATTTACGGTAATGGAAGTACTCATTCAGGAAGAGAAGAGAGAT 599
||| | ||||||| ||||| ||||| |||||||| || |||| || |||||||| ||||
Sbjct 504 GAGGA-TTCAGACGAACATATACGGAAATGGAAGCACACATTTGGGCAGAGAAGAAAGAT 562
Query 600 ATAATCTCTGGTTTGATCCTACTGAAGATTTTCATCAATACAGTATCCTCTGGTCTGATT 659
||||||| ||||||||||| || || |||||||||||||||||||||||||||||| ||
Sbjct 563 ATAATCTTTGGTTTGATCCAACAGAGGATTTTCATCAATACAGTATCCTCTGGTCTCTTT 622
Query 660 CTCACATCATATTCTT-TGTAGACAATGTTCCTATTAGAGAGGTCAAACGTACTGCGGAA 718
||||||||||||| || ||||||||||||||| || || || |||||||| || |||| |
Sbjct 623 CTCACATCATATT-TTGTGTAGACAATGTTCCGATCAGGGAAGTCAAACGCACGGCGGCA 681
Query 719 ATGGGTGGTCACTTTCCATCAAAGCCGATGTCTCTCTACACAACAATATGGGACGGTTCT 778
||||| ||| |||| || | ||||| |||||| | ||| |||| |||||||| || ||
Sbjct 682 ATGGGCGGTGACTTCCCGGCGAAGCCAATGTCTTTATACGCAACCATATGGGATGGCTCC 741
Query 779 AAATGGGCAACTAACGGTGGAAAGTACGGTGTAAACTACAAATATGCGCCTTACATTGCG 838
|||||||| ||| | || || |||||||||||||| ||||||||||| |||||| | ||
Sbjct 742 AAATGGGCGACTGATGGAGGCAAGTACGGTGTAAATTACAAATATGCCCCTTACGTCGCT 801
Query 839 CGGTTCTCGGATCT-AGTCCTGCACGGCTGCCCCGTGGACCCTATCGAGCAGTTTCCGAG 897
| ||| | ||||| | | || ||||||||| |||| ||||| | |||| ||||||||||
Sbjct 802 CAATTCACTGATCTGA-TACTCCACGGCTGCGCCGTTGACCCCACCGAGAAGTTTCCGAG 860
Query 898 GTGCGATGAAGGCGCGG-CTGAGGATATGCGTGCGGCGCAA-G-AGATTACTCCTTCACA 954
||||| || | |||| | | | || | | | ||| | |||| || || ||
Sbjct 861 CTGCGAAGATGAAGCGGTC-GCGAATCTCCAC-CTA-GCATCGGAGATAACGGAGTCTCA 917
Query 955 AAGGAGTAAAATGGAT-GTTTTCAGACGGAGACTCATGACATATTCATATTGCTATGATC 1013
|||| || ||||| |||||| | |||| || |||||| ||||| ||||| || ||||
Sbjct 918 GAGGAACAAGATGGAGAGTTTTCGG-CGGAAACACATGACTTATTCGTATTGTTACGATC 976
Query 1014 GGGCT-AGGTACAATGTTGCTTTA-TCGGAGTGTGTGGTGAATCCCGCTGAGGCTCAAAG 1071
| |||||||| | || ||| || || |||||||||||||| || |||||| |||
Sbjct 977 ATA-TGAGGTACAA-GCTGGTTTTGTCTGAATGTGTGGTGAATCCGGCCGAGGCT-AAAC 1033
Query 1072 G-CTTAGGGTTTATGATCCGGTCA-GATTTGGCGGCATTCCGAGGCGC-CACCG-CAATG 1127
| || ||||| |||||||| |||| | || || || || || | || ||||| | ||
Sbjct 1034 GTCTCAGGGTATATGATCCTGTCACG-TTCGGTGGGATCCCTCG-CGGTCACCGTCG-TG 1090
Query 1128 GAAAGCACCGGAGCA 1142
| |||||||||||||
Sbjct 1091 GGAAGCACCGGAGCA 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5