BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01860.1
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484103 jgi|Araly1|484103|fgenesh2_kg.5__95__AT2G01860.1 2095 0.0
> Ahg484103 jgi|Araly1|484103|fgenesh2_kg.5__95__AT2G01860.1
Length=1620
Score = 2095 bits (1134), Expect = 0.0
Identities = 1355/1461 (93%), Gaps = 18/1461 (1%)
Strand=Plus/Plus
Query 241 TGTCCTGTCTCTTTGTCACTTAGCTTTCACTTGAATCTTCGAACCAGTAGAATCGGAAAC 300
||||||||||||| |||||||||||| |||||||||| || |||||| || |||| |||
Sbjct 97 TGTCCTGTCTCTTCGTCACTTAGCTTCCACTTGAATCCTCAAACCAGGAGTCTCGGTAAC 156
Query 301 ATAGGAGTAACAAGAGTCAACGCTAGTCAAAGGAATCACTCTAAGAAACTCACTAAGAAT 360
||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 157 ATAGGAGTAACAAGAGTCAACGCGAGTCAAAGGAACCACTTTAAGAAACTCACTAAGAAT 216
Query 361 CTCCGTAATCCACGCCGT-ACCAAGCTTCCTCCTGATTTTGGTGTTAATTTGTTTCTTAG 419
|| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 217 CTGCGTAATCCACGCC-TAACCAAGCTTCCTCCTGATTTTGGTGTTAATTTGTTTCTGAG 275
Query 420 GAAACCCAAAATTGAACCACTAGt-gattgatgatgatgatgagcaa-g-t-t-caagaa 474
||||||||||| ||||||| | || || |||| |||||| ||| || | | | |||| |
Sbjct 276 GAAACCCAAAACTGAACCAGTTGTGGA-TGATTATGATGCTGA-TAATGATGTGCAAG-A 332
Query 475 tcagtgaa--tgat-gatgatgatgCTGTTGTATGGGAACCAGAAGAAATCGAGGCTATT 531
||| ||| || | ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 333 TCA-AGAATCTG-TGGATGATGATGCTGTTGTGTGGGAACCAGAAGAAATCGAGGCGATT 390
Query 532 TCATCGCTGTTTCAGAAAAGGATACCTCAAAAACCCGATAAACCGAGTCGAGTTAGGCCT 591
|| ||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 391 TCTTCGCTTTTTCAGAAAAGGATTCCTCAAAAACCCGGTAAACCGATTCGAGTTAGGCCT 450
Query 592 TTACCACTTCCTCAACCTCACAAGTTACGACCTTTAGGTCTTCCAACTCCAAAGAAGAAC 651
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TTACCACTTCCTCAACCCCACAAGTTACGACCTTTAGGTCTTCCAACTCCAAAGAAGAAC 510
Query 652 ATTATCAGATCACCTGCATTGTCTTCTGTATCGAAGCAAGTGTATAAAGATCCAAGCTTT 711
| | | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 511 A-T-T-AGATCAGCTGCATTGTCTTCTGTATCGAAGCAAGTGTATAAAGATCCAAGTTTT 567
Query 712 CTCATTGGTTTAGCTAGAGAGATCAAGAGCTTGCCTTCTTCTGATGCAGATGTCTCTCTT 771
|| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 568 CTTATCGGTTTAGCTAGAGAGATTAAGAGCTTGCCTTCTTCTGATGCTGATGTCTCTCTT 627
Query 772 GTTCTCAATAAATGGGTTAGTTTCTTGCGTAAAGGGTCACTCTCTACGACTATTCGAGAA 831
|||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 628 GTTCTCAATAAATGGGTTAGCTTCTTGCGTAAAGGGTCACTTTCTATGACGATTCGAGAA 687
Query 832 TTGGGTCATATGGGTTTGCCTGAGAGAGCTTTACAGACGTATCATTGGGCTGAAAAGCAT 891
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 688 TTGGGTCATATGGGTTTGCCCGAGAGAGCTTTACAGACATATCATTGGGCTGAGAAGCAT 747
Query 892 TCTCATTTAGTCCCTGATAACCGGATTCTTGCATCGACTATCCAGGTTTTGGCGAAGCAC 951
||||||||||| || ||||| |||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 748 TCTCATTTAGTACCAGATAATCGGATTCTCGCATCCACTATTCAGGTTTTGGCCAAGCAC 807
Query 952 CATGAGCTGAAACTGCTTAAATTCGACAATAGTTTGGCTAGCAAGAATGTAATTGAAGCT 1011
|| ||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 808 CACGAGCTGAAATTGCTTAAGTTTGACAATAGTTTGGCTAGCAAGAACGTAATCGAAGCA 867
Query 1012 ATGATCAAGGGATGCATTGAAGGTGGATGGTTGAATCTAGCTCGGAAGCTTATACTGATC 1071
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 868 ATGATCAAGGGATGTATTGAAGGTGGATGGTTGAATCTAGCCCGGAAGCTTATACTGATC 927
Query 1072 TCGAAGAGTAACAATCGAATACTTGACTCGAGTGTTTACGTGAAGATGATTCTGGAAATA 1131
||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||
Sbjct 928 TCGAAGAGTAACAATCGAATACTCGACTCGAGTATTTACGTAAAGATGATTCTGGAGATA 987
Query 1132 GCTAAAAACCCTGACAAGTACCATCTTGTTGTTGCTCTTCTTGAGGAACTGaaaaaaaGA 1191
||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 988 GCTAAAAACCCTGACAAGTACCATCTTGTTGTTACTCTTCTCGAGGAACTGAAAGAAAGA 1047
Query 1192 GAAGATTTGAAATTGAGCCAGCAGGATTGCACAAGTATTATGAAGATCTGTGTGAAACTG 1251
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1048 GAAGATTTGAAATTGAGCCAACAGGATTGCACAGGTATTATGAAGATCTGTGTGAAACTA 1107
Query 1252 GGAGAATTTGAGCTTGTTGAATCTCTCTTTGACTGGTTTAAAGCATCAAACAGAGAACCA 1311
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1108 GGAGAATTTGAGCTCGTTGAATCTCTCTTTGACTGGTTTAAAGAATCAAACAGAGAACCA 1167
Query 1312 AGCGTTGTAATGTACACTACGATGATACATAGCCGGTATTCGGAACAAAAATACCGGGAG 1371
|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct 1168 AGCGTTGTAATGTACACTACGATGATCCATAGCAGGTATTCGGAACAGAAATACCGGGAG 1227
Query 1372 GCAATGAGTGTGGTATGGGAGATGGAAGAATCAAATTGTCTTCTTGATCTTCCAGCTTAT 1431
|| |||| |||||| ||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1228 GCGATGAATGTGGTTTGGGAGATGGAGGAATCAAACTGTCTCCTTGATCTTCCAGCTTAT 1287
Query 1432 AGAGTAGTCATTAAACTATTTGTAGCATTGGATGATTTGGGAAGAGCAATGAGGTATTAC 1491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1288 AGAGTAGTCATTAAACTATTCGTAGCATTGGATGATTTGGGAAGAGCAATGAGGTATTAC 1347
Query 1492 TCTAAACTCAAGGAAGCTGGATTCTCGCCAACGTATGATATTTATCGCGATATGATTAGC 1551
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1348 TCTAAACTCAAGGAAGCTGGATTCTCGCCAACTTATGATATTTATCGCGATATGATTAAC 1407
Query 1552 GTTTATACCGCTTCAGGGCGATTGACAAAGTGTAAAGAGATATGTAAGGAGGTTGAAGAT 1611
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1408 GTTTATACCGCTTCTGGGCGATTGACAAAGTGTAAAGAGATATGTAAGGAAGTTGAAGAT 1467
Query 1612 GCTGGATTGAGGTTGGATAAAGATACTTCATTTAGGTTACTGCAGCTCGAGAAGCAAACA 1671
|||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 1468 GCTGGATTGAGGTTAGATAAAGATACTTCATTTATGTTGTTGCAGCTCGAAAAGCAAACA 1527
Query 1672 ATGTCTCTTTTGCACTGAAGA 1692
|||||||||||||||||||||
Sbjct 1528 ATGTCTCTTTTGCACTGAAGA 1548
Score = 137 bits (74), Expect = 2e-31
Identities = 79/81 (98%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 1781 CACT-AAGATTTCTACTGTTTGAAAGTGTTTTCAGGCAAAGATGAAAGTGGAAACTTAAC 1839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1540 CACTGAAGATTTCTACTGTTTGAAAGTGTTTTCAGGCAAAGATGAAAGTGGAAACTTGAC 1599
Query 1840 AATGTCAGAATCAGACATAGC 1860
|||||||||||||||||||||
Sbjct 1600 AATGTCAGAATCAGACATAGC 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70009870310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5