BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01880.1
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484105 jgi|Araly1|484105|fgenesh2_kg.5__97__AT2G01880.1 1561 0.0
> Ahg484105 jgi|Araly1|484105|fgenesh2_kg.5__97__AT2G01880.1
Length=1042
Score = 1561 bits (845), Expect = 0.0
Identities = 968/1027 (94%), Gaps = 10/1027 (1%)
Strand=Plus/Plus
Query 31 TTGTCTCATACCAGATAAAACAAAGTAAGAAGAAGATGAAGATGCACGTATGTTTTAGTG 90
|||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||
Sbjct 1 TTGTCTAATACCAGATAAAA-TAAGTAAGAAGAAAATGAAGATTTACGTATGTTTTAGTG 59
Query 91 TGATTTTGATGTTTCTAAGCATCTTCTTCATCAATGGTGCTTTGTCGAAGCTTGAAAGGT 150
||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 60 TGATTTTGATGTTTCTATGCATCTTCTTCATCAGTGGTGCTTTGTCGGAGCTTGAAAGGT 119
Query 151 TGAAACATCCGGTGAAGAAGAAATCTGATGGCTCTCTGAGTTTTCTTGTTATCGGAGATT 210
|| ||||||||||| | | |||||||||||||||||||||||||| || | |||||||
Sbjct 120 TGGAACATCCGGTG-A-CA-AAATCTGATGGCTCTCTGAGTTTTCTGGTCGTTGGAGATT 176
Query 211 GGGGACGCAAAGGTG-GTTTTAATCAATCTCTCGTTGCACATCAGATGGGAGTTGTGGGA 269
|||||||| |||| | | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 177 GGGGACGCGAAGGAGAG-TTTAATCAATCTCTCGTTGCACATCAGATGGGAATTGTGGGA 235
Query 270 GAGAAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTA 329
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GAGCAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTA 295
Query 330 AAAGGAGTCAATGATC-CTTCCTTTGAAGCCTCTTTCTCTCATATCTACACTCATCCTAG 388
||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AAAGGAGACAATGA-CACTTCCTTTGAAGCCTCTTTCTCTCATATCTACACTCATCCTAG 354
Query 389 TCTCCAAAAACAATGGTATTCAGTTTTGGGTAACCATGATTACAGAGGAAATGTTGAAGC 448
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCTCCAAAAACAGTGGTATTCAGTTTTGGGTAACCATGATTACAGAGGAAATGTTGAAGC 414
Query 449 ACAACTAAGTAAAGTTCTCACCCAAAAAGATTGGAGATGGTTTTGTCGCAGATCTTTTGT 508
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CCAACTAAGTCAAGTTCTTACCCAAAAAGATTGGAGATGGTTTTGTCGCAGATCTTTTGT 474
Query 509 CTTATCCTCAGGAATGGTGGATTTTTTCTTCGCGGACACAAATCCTTTTGTAGAAAAATA 568
||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||
Sbjct 475 CTTATCCTCAGGAATGGTGGAGTTTTTCTTCGTGGACACAAATCCATTTGTAGATAAATA 534
Query 569 CTTCACTGAACCAGAAGATCACACTTATGATTGGAGAAATGTCTTACCAAGAAATAAATA 628
||||||||| |||| ||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct 535 CTTCACTGATCCAGGAGATCACACTTATGATTGGAGCACTGTCTTACCTAGAAATAAATA 594
Query 629 CATCTCAAACCTCTTACATGATTTAGATTTAGAGATTAAAAAGTCGCGTGCCACATGGAA 688
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 595 CATCTCAAACCTCTTACATGATTTAGATTTAGAGATTAAAAAATCGCGTGCTACATGGAA 654
Query 689 ATTTGTCGTGGGACATCACGGGATCAAAACCGCAGGTAATCACGGTGTGACTCAAGAGCT 748
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 655 ATTTGTCGTGGGACATCACGGGATCAAAACCGCAGGGCATCACGGTGTGACCCAAGAGCT 714
Query 749 TGTAGATCAACTTCTTCCAATTCTAGAGGAGAATAAAGTGGACTTGTACATAAATGGACA 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CGTAGATCAACTTCTTCCAATTCTAGAGGAGAATAAAGTGGACTTGTACATAAATGGACA 774
Query 809 TGATCACTGCTTGCAACACATTGGTTCTCACGGTAAAACCCAATTTCTTACAAGTGGAGG 868
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct 775 TGATCACTGCTTGCAACACATTGGTTCTGACGGTGAAACCCAATTTCTGACAAGTGGAGG 834
Query 869 AGGATCAAAGGCATGGAGAGGACATGTTCAGCCATGGGATCCAAAAGAACTCAAACTGTA 928
|||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 835 AGGATCAAAGGCATGGAGAGGAGATATTCAGCCATGGGATCCCAAAGAACTCAAACTGTA 894
Query 929 TTACGATGGACAAGGTTTCATGTCTCTTCACATCACTCACTCCAAAGCTAAATTCATCTA 988
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 895 TTACGATGGACAAGGTTTCATGTCTCTTCACATCACTCACTCCCAAGCTAACTTCATCTA 954
Query 989 CTATGATGTTTCCGGCAATGTTCTTCACCGATCCTCATTGTCCAAAAGATCTGCTCATCT 1048
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 955 CTATGATGTTTCCGGCAATGTTCTTCACCAATCCTCATTGTCCAAAAGATCTGTTC-TCC 1013
Query 1049 T-TAAAT 1054
| |||||
Sbjct 1014 TCTAAAT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44489444139
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5