BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01890.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484107 jgi|Araly1|484107|fgenesh2_kg.5__99__AT2G01890.1 1773 0.0
Ahg471656 jgi|Araly1|471656|fgenesh2_kg.1__1610__AT1G14700.1 610 8e-174
> Ahg484107 jgi|Araly1|484107|fgenesh2_kg.5__99__AT2G01890.1
Length=1212
Score = 1773 bits (960), Expect = 0.0
Identities = 1151/1238 (93%), Gaps = 33/1238 (3%)
Strand=Plus/Plus
Query 1 AGGTCCATCACCTCTTACA-TTTTTTCTCCAAAGTCTCTCAATGGATAGCTTGAGAGATG 59
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 1 AGGTCCATCACCTCTTACATTTTTTTGTTCAAAGTCTCTCAATGGATAGCTTGAGAGATG 60
Query 60 TTAAGCCTATCAAACTCATATTTTCTATTTTCTGTCTAGTTATTATACTATCCGCCTGTA 119
|||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 61 TTAAGCCTATCAAATTCATATTTTCTATTTTCTGTCTAATTTTTATATTATCCGCCTGTA 120
Query 120 ATTCAACGGCAGAGCTACCGCGGTTCGTCCAACCACCAGAACCCGATGGTTCACTCAGTT 179
|||||| ||| |||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 ATTCAATGGCGGAGCTACCACGGTTCGTCCAACCACCAAAACCCGATGGTACACTCAGTT 180
Query 180 TTCTCGTTGTCGGCGACTGGGGAAGAAGAGGTTCTTATAATCAGTCCCAAGTAGCTCTTC 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TTCTCGTTGTCGGCGACTGGGGAAGAAGAGGTTCTTATAACCAGTCCCAAGTAGCTCTTC 240
Query 240 AGATGGGAAAAATAGGGAAGGACTTAAATATTGATTTCCTCATTTCGACTGGAGATAACT 299
||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 241 AGATGGGGAAAACAGGGAAGGATTTGAATATTGATTTCCTCATTTCGACTGGAGATAACT 300
Query 300 TTTATGATGATGGAATAATCAGTCCATATGATTCTCAATTTCAAGATTCGTTTACCAATA 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTATGATGACGGAATAATCAGTCCATATGATTCTCAATTTCAAGATTCGTTTACCAATA 360
Query 360 TTTACACAGCAACTAGCTTACAAAAACCATGGTACAATGTATTAGGAAATCATGATTATA 419
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTACACATCATCTAGCTTACAAAAACCATGGTACAATGTATTAGGAAATCATGATTATA 420
Query 420 GAGGTAACGTCTATGCGCAACTCAGCCCCATACTCAGGGATTTGGACTGCCGTTGGATTT 479
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 421 GAGGTAACGTCTATGCGCAACTCAGCCCCATTCTCAGGGATTTGGACTGCCGATGGATTT 480
Query 480 GTTTAAGATCTTATGTTGTTAACGCCGAGATTGTCGATATTTTCTTCGTGGATACAACAC 539
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 481 GTTTAAGATCTTATGTTGTTAACGCCGAGATTGTCGATATTTTCTTTGTGGACACAACAC 540
Query 540 CGTTCGTAGATAGATATTTTGATGAACCAAAGGACCATGTATATGATTGGAGAGGCGTAT 599
|||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 541 CGTTCGTAGATAAATATTTTGATGAACCAAAAGACCATGTGTATGATTGGAGAGGCGTAT 600
Query 600 TACCGAGAAATAAATACCTTAACAGTCTCTTAACGGATGTGGATGTGGCATTGCAAGAAT 659
|||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 601 TACCAAGAAATAAATATCTTAACAATCTCTTAACGGATGTCGATGTGGCATTGCAAGAAT 660
Query 660 CAATGGCTAAATGGAAAATAGTGGTAGGCCATCACACGATCAAAAGTGCAGGTCACCACG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAATGGCTAAATGGAAAATAGTGGTAGGCCATCACACGATCAAAAGTGCAGGTCACCACG 720
Query 720 GAAAT-ACCATAGAGCTTGAGAAACAACTTTTACCTATCCTCGAGGCTAATGAAGTGGAT 778
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 G-CGTAACGATAGAGCTTGAGAAACAACTTTTACCTATCCTCGAGGCTAATGAAGTGGAT 779
Query 779 CTCTATATAAACGGGCATGATCATTGCTTGGAGCACATAAGCAGCATCAACAGTGGAATA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCTATATAAACGGGCATGATCATTGCTTGGAGCACATAAGCAGCATCAACAGTGGAATA 839
Query 839 CAATTTATGACAAGTGGAGGTGGCTCCAAGGCGTGGAAAGGAGATGTGAATGATTGGAAC 898
||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||
Sbjct 840 CAATTTATGACAAGTGGCGGTGGATCTAAGGCGTGGAAAGGAGATATGAATGATTGGAAC 899
Query 899 CCACAAGAGATGAGGTTTTACTATGATGGACAAGGATTCATGTCGGTTTACACATCCGAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCACAAGAGATGAGGTTTTACTATGATGGACAAGGATTCATGTCGGTTTACACATCCGAA 959
Query 959 GCTGAACTACGCGTCGTTTTCTATGATGGTCTTGGTCACGTTTTGCATCGATGGAGCACT 1018
|| ||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||
Sbjct 960 GCCGAACTACGCGTCGTTTTTTATGATGGTTTTGGTCGTATTTTACATCGATGGAGCACT 1019
Query 1019 CT-TAAGAATGGGGTTTATTCCGATATCTAATCGATGGTCAGACAAAAAAGTAGTTAAGA 1077
| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1020 -TGTAAGAAGGGGGTTTATTCCGATATCTGATCGATGGTCAGACAAAAAAAAAGTTAAGA 1078
Query 1078 GTTACGACATAATTATTTATATTAATTAGTCCATTGTTTATTATGTTGATATTTCATGTG 1137
|||| | | || | |||||||||||||||||| |||||||||
Sbjct 1079 GTTA--A-AG--TT----------------C-ATTGTTTATTATGTTGATGTTTCATGTG 1116
Query 1138 AGTTAAACATTTTTTAATGTTGTGTGATTATTTTCGAATTCTTAATGGTATCTTAATACA 1197
| |||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1117 ACTTAA-CATTTCTTAATGTTGTGTGATTATTTTCGAATTCTTAAAGGTATTTTAATACA 1175
Query 1198 TGGAGACATAT----CTTCTCATGATTTGGTTTTGATT 1231
||||||||||| || ||||||||||||||||||||
Sbjct 1176 TGGAGACATATAGAACT-CTCATGATTTGGTTTTGATT 1212
> Ahg471656 jgi|Araly1|471656|fgenesh2_kg.1__1610__AT1G14700.1
Length=1223
Score = 610 bits (330), Expect = 8e-174
Identities = 739/933 (79%), Gaps = 42/933 (5%)
Strand=Plus/Plus
Query 99 TTATTATACTATCCGCCTGTAATTCAACGGCAGAGCTACCGC-GG-TTCGTCCAACC-AC 155
|||||||| | ||| || || ||| ||||| ||||| |||| || | | | || || |
Sbjct 124 TTATTATATTCTCCACCCATAGTTCCACGGCGGAGCT-CCGCAGGCTAC-TGCAGCCGGC 181
Query 156 CAGAACCCGATGGTTCACTCAGTTTTCTCGTTGTCGGCGACTGGGGAAGAAGAGGTTCTT 215
| |||| |||||| || | || |||||||| |||| ||||||||||||||||| || |
Sbjct 182 GA-AACCTGATGGTACAGTAAGCTTTCTCGTCATCGGAGACTGGGGAAGAAGAGGCTCCT 240
Query 216 ATAATCAGTCCCAAGTAGCTCTTCAGATGGGAAAAATAGGGA-AGGACTTAAATATTGAT 274
|||| ||||||||||||||||||||||||||| |||| ||| || | ||| | || |||
Sbjct 241 ATAACCAGTCCCAAGTAGCTCTTCAGATGGGAGAAAT-CGGAGAGAAATTAGACATCGAT 299
Query 275 TTCCTCATTTCGACTGGAGATAACTTTTATGATGATGGAATAATCAGTCCAT--ATGATT 332
|| | ||||| ||||||||||| ||||| || |||| || ||| | | | |||
Sbjct 300 TTTGTAATTTCTACTGGAGATAATTTTTACGACAATGGGTTAGCCAG--CTTGCACGATC 357
Query 333 CTCAATTTCAAGATTCGTTTACCAATATTTACA-CAGCAACTAGCTTACAAAAACCATGG 391
||| |||||||||||| |||| ||| ||||| | || | | ||||| || ||||| |||
Sbjct 358 CTCTATTTCAAGATTCTTTTATCAACATTTATACCA-CTCCGAGCTTGCAGAAACCTTGG 416
Query 392 TACAATGTATTAGGAAATCATGATTATAGAGGTAACGTCTATGCG--CAACTCAGCCCCA 449
|| | ||| |||||||||||||||||||||||| | ||| | | | ||||| ||||| |
Sbjct 417 TATAGTGTTTTAGGAAATCATGATTATAGAGGTGATGTC-A-GGGTACAACTTAGCCCTA 474
Query 450 TACTCAGGGATTTGGACTGCCGTTGGATTTGTTTAAGATCTTAT-GTTGTTAACGCCGAG 508
| ||||||| ||||||| | | ||| |||| | ||||||| | |||| || || |||
Sbjct 475 TGCTCAGGGCTTTGGACAACAGATGGGTTTGCATGAGATCTT-TCATTGTAAATGCTGAG 533
Query 509 ATTGTCGATATTTTCTTCGTGGATACAACACCGTTCGTAGATAGATATTTTGAT-GAACC 567
|| |||||| |||| |||||||| ||||| || ||||| |||| ||| ||| || ||||
Sbjct 534 ATCGTCGATTTTTTGTTCGTGGACACAACTCCATTCGTTGATAAATACTTT-ATCCAACC 592
Query 568 AAAGGACCATGTATATGATTGGAGAGGCGTATTACCGAGAAATAAATACCTTAACAGTCT 627
||| || ||||| ||||| ||||| ||||||||||| || | | ||| || |||| |||
Sbjct 593 AAATGAGCATGTTTATGACTGGAGCGGCGTATTACCTAGGCAGACATATCTGAACAATCT 652
Query 628 CTTAACGGATGTGGATGTGGCATTGCA-AGAATCAATGGCTAAA-TGGAAAATAGTGGTA 685
||||| ||| || || ||||||||| | ||| ||| | || ||| |||||||||||| |
Sbjct 653 CTTAAAGGAAGTCGACGTGGCATTG-AGAGAGTCACTTGC-AAAGTGGAAAATAGTGATT 710
Query 686 GGCCATCACACGATCAAAAGTGCAGGTCACCACGGAAATACCATAGAGCTT-GAGAAACA 744
|| || || ||||| ||||| ||||| |||||||| || ||||| ||| || ||||| ||
Sbjct 711 GGTCACCATACGATTAAAAGCGCAGGCCACCACGGGAACACCATTGAG-TTGGAGAAGCA 769
Query 745 ACTTTTACCTATCCTCGAGGCTAATGAAGTGGATCTCTATATAAACGGGCATGATCATTG 804
||||||||||| ||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct 770 CCTTTTACCTATTCTCCAAGCAAATGAAGTGGATCTCTACGTAAACGGGCATGATCATTG 829
Query 805 CTTGGAGCACATAAGCAGCATCAACAGTGGA-ATACAATTTATGACAAGTGGAGGTGGCT 863
||||||||||||||||||| | ||||| | || ||||||||||| ||||||||||| |
Sbjct 830 CTTGGAGCACATAAGCAGCGTGGACAGTA-ACATTCAATTTATGACGAGTGGAGGTGGAT 888
Query 864 CCAAGGCGTGGAAAGGAGATG---TGAA-TGA-TTGGAACCCACAAGA---GATGAGGTT 915
|||||||||||||||||| || || | | | |||||||| |||||| ||||| |||
Sbjct 889 CCAAGGCGTGGAAAGGAGGTGACGTGGACT-ACTTGGAACC-ACAAGATCAGATGAAGTT 946
Query 916 TTACTATGATGGACAAGGATTCATGTCGGTTTACACATCCGAAGCTGAACTACGCGTCGT 975
|||||| || ||||||||||| ||||||||| || || ||||||||||| || || ||
Sbjct 947 TTACTACGACGGACAAGGATTTATGTCGGTTCACGTTTCAGAAGCTGAACTGCGTGTAGT 1006
Query 976 -TTTCTATGATGGTCTTGGTCACGTTTTGCATC 1007
||| ||||||| | |||| |||||||||||||
Sbjct 1007 CTTT-TATGATGTTTTTGGGCACGTTTTGCATC 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5