BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01900.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484108 jgi|Araly1|484108|fgenesh2_kg.5__100__AT2G01900.1 1995 0.0
Ahg892416 jgi|Araly1|892416|Al_scaffold_0006_412 63.9 3e-09
> Ahg484108 jgi|Araly1|484108|fgenesh2_kg.5__100__AT2G01900.1
Length=1500
Score = 1995 bits (1080), Expect = 0.0
Identities = 1312/1420 (92%), Gaps = 31/1420 (2%)
Strand=Plus/Plus
Query 130 TATATAACCGGACT-AATATACGTATAACTTATAGTTATTCTATCTTGACCATTGATATA 188
|||||||||||||| |||||||||||||||| | |||||||| |||||| |||| |||||
Sbjct 83 TATATAACCGGACTAAATATACGTATAACTTCTTGTTATTCTCTCTTGATCATTAATATA 142
Query 189 TGCGAATCACTCTATGGT-A-T--TA-ATAAGGTTATGTGGCCAAGACTTGTGGCCAACA 243
||| |||||||||||||| | | || |||||||||||||||||||||||||||||||||
Sbjct 143 TGCAAATCACTCTATGGTAATTGATATATAAGGTTATGTGGCCAAGACTTGTGGCCAACA 202
Query 244 AGATCCTAAGGAAAAGCCTCGGGAGCAACAACTTCGTTGCCGATTTCCCACCTAATACTG 303
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 203 AGATCCTAAGGAAAAGTGTCGGGAGCAACAACTTCGTTGCCGATTTCCCACCGGATACCG 262
Query 304 ATCAGAAGCTTATAGAAGCTTCCGGATTAGCTGATGAAC--G--------A--TCTAAAT 351
| |||||| || |||||||||||||||||| |||||||| | | |||||||
Sbjct 263 AGCAGAAGTTTCTAGAAGCTTCCGGATTAGTTGATGAACGAGCTTCTTTCACTTCTAAAT 322
Query 352 CAATTCTCCACAACCAACACAAAACCACTCTTCTCAACTA-CAAGGTTTTTGTAAGCACA 410
||||||| | | | |||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 323 CAATTCTTCTCGAGCAACACAAAACCACTCATCTCAAC-ACCAAGGTTTTTGTAAGCACA 381
Query 411 TGGAACGTGGGTGGTATCGTACCGGACGATGGACTTGACATGGAGGATCTACTGGAAACA 470
|||||||| |||||||| ||||| || ||||| |||||||||||||||| ||||||||
Sbjct 382 TGGAACGTCGGTGGTATTGTACCAGAAGATGGGGTTGACATGGAGGATCTGTTGGAAACA 441
Query 471 CATAAAACACCGTGCGACATATACGTGCTTGGGTTTCAAGAGGTTGTGCCTCTACGAGCT 530
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 442 CATCAAACACCGTGCGACATATACGTGCTTGGGTTTCAAGAGGTAGTGCCTCTTCGAGCT 501
Query 531 TCGAATGTTTTGGGATCAGATAACAACAAAGTCTCTACAAAATGGAACTCTTTGATAAGA 590
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 502 TCGAATGTTTTGGGATCAGATAACAACAAAGTCTCAACAAAATGGAACTCTTTGATAAGA 561
Query 591 GATGCTTTGAACAA-GAGAGCAAGACCTCATCGAGACGAAGACTTGTCGGAATCAAAGGG 649
|| ||||||||||| || ||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 562 GAGGCTTTGAACAAGGA-AGCAAAACCTCATGGAGACAAAGACTTGTCGGAATCAAAGGG 620
Query 650 CATTAATGGTATTTCACAAGATTTTAGATGTATCATAAGTAAACAGATGGTCGGAATCTT 709
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 621 TATTAATGGTATTTCACAAGATTTCAGATGTATCATAAGTAAACAGATGGTCGGAATCTT 680
Query 710 GATCACCGTTTGGGTCCGAGGTGATCTCTGGCCGTACATCCGTTATCCTAGCGTTTCATG 769
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 681 GATCACCGTTTGGGTCCGAGGTGATCTCTGGCCGTACATCCGTCATCCTAACGTTTCATG 740
Query 770 CGTTGGTTGCGGCATCATGGGTTGCTTAGGAAACAAGGGATCAGTATCGGTTAGATTTCA 829
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 741 CGTTGGTTGCGGCATCATGGGTTGCTTAGGAAACAAGGGATCGGTATCGGTTAGATTTCA 800
Query 830 ATTGCACGAAACGACATTTTGTTTCGTTTGTAGCCATCTAGCTTCTGGTGGCCGCGACCG 889
||||||||||||||| || ||||||||||| ||||| |||||||| |||||||| | |||
Sbjct 801 ATTGCACGAAACGACCTTCTGTTTCGTTTGCAGCCACCTAGCTTCCGGTGGCCGTGGCCG 860
Query 890 AGATGAAAGACAGAGAAACTCCGACGTCAACGAGATCTTAGCTAGATCTAGTTTTCCTCG 949
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 861 AGATGAAAGGCAGAGAAACTCCGACGTTAACGAGATCTTAGCTAGATCGAGTTTTCCTCG 920
Query 950 AGGCTCATCTCTAGATTTACCCAAAAAGATCCTTGATCACGATCGGGTGAtttttttGGG 1009
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 921 AGGCTCATCTCTAGATTTACCCAAAAAGATTCTTGATCACGATCGAGTGATTTTTCTGGG 980
Query 1010 AGACTTGAATTATAGAATTTCATTACCGGAGGAGAAGACAAGATTATTGGTGGAAAGCAA 1069
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 981 AGACTTGAACTATAGAATTTCATTACCCGAGGAGAAGACAAGATTATTGGTGGAAAGCAA 1040
Query 1070 AAAATGGAACATCTTACTAGAAAATGATCAGCTGAGGATGGAGATCATGAACGGCCAGAT 1129
| |||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 1041 AGAATGGAACATCTTATTAGAAAATGATCAGCTAAGGATGGAGATCTTGAACGGTCAGAT 1100
Query 1130 TTTCAGAGGGTGGCAAGAAGGAATTGTCAAATTTGCTCCAACGTATAAATACGTTCCAAA 1189
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1101 TTTCAGAGGTTGGCAAGAAGGAATTGTCAAATTTGCTCCAACTTATAAATATGTTCCAAA 1160
Query 1190 TTCGGATTTATATTACGGATGCATTACATACAAAAAAGACGAGAAGAAACGAGCTCCTGC 1249
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1161 TTCGGATTTATATTACGGATGCATTACATATAAAAAAGACGAGAAGAAACGAGCTCCTGC 1220
Query 1250 ATGGTGTGATCGAATAATATGGTACGGAAATGGACTGAAGCAACATGAATATACAAGAGG 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1221 ATGGTGTGATCGAATAATATGGTACGGAAATGGACTGAAGCAACATGAATATACTAGAGG 1280
Query 1310 AGAAACGAAGATATCTGATCATAGGCCTGTCAAAGCAATTTTCACCACAGAAATTACTGT 1369
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1281 AGAAACGAAGATATCTGATCATAGACCTGTCAAAGCTATTTTCACCACAGAAATTACTGT 1340
Query 1370 AACACGGCGTGGTAAAAAGATTCGTAATTTCTTTTTCTCGGACAGATTTGAAGAAAGAAT 1429
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1341 TATACGGCGTGGTAAAAAGATTCGTAATTTCTTTTTCTCGGACAGATTTGAAGACAGAAT 1400
Query 1430 T---GG-T---G-A-CATAGATTCTAAAGACTACTCGTGGATATCTACATAGTTTTATTA 1480
| || | | | ||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1401 TAACGGGTATAGTAGCATCGATTCCAAAGACTACTCGTGGATATCTACATAGTTTTATAA 1460
Query 1481 ATCGGGGTGATATCTTGTCACTTGTTAATATACAATTCAC 1520
|||||||| | ||||||||||||||||||||| |||||||
Sbjct 1461 ATCGGGGTTAAATCTTGTCACTTGTTAATATATAATTCAC 1500
Score = 147 bits (79), Expect = 3e-34
Identities = 81/82 (99%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 1 ttctttctatctcttgttctttaatttgtctctctctttttctctAGCAATGCTTGGAAG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTTCTATCTATTGTTCTTTAATTTGTCTCTCTCTTTTTCTCTAGCAATGCTTGGAAG 60
Query 61 CTATAGAGAAGTGAGTATTAGT 82
||||||||||||||||||||||
Sbjct 61 CTATAGAGAAGTGAGTATTAGT 82
> Ahg892416 jgi|Araly1|892416|Al_scaffold_0006_412
Length=1410
Score = 63.9 bits (34), Expect = 3e-09
Identities = 117/155 (75%), Gaps = 14/155 (9%)
Strand=Plus/Plus
Query 778 GCGGCATCATGGGTTGCTTAGGAAACAAGGGAT-CAGTATCGGTTAGATTT-CAATTGC- 834
|||| |||||||||||||||||||||||||||| || || | || || ||| || | |
Sbjct 776 GCGGAATCATGGGTTGCTTAGGAAACAAGGGATGCA-TAGCTGTGAG-TTTGCAGCT-CT 832
Query 835 ACGAA-ACGA-CATTTTGTTTCGTTTGTAGCCATCTAGCTTCTGGTG-GCCGCGACCGAG 891
|| || || | | || || ||| | || || |||||||||||||||| | | || |||
Sbjct 833 AC-AAGACTAGC-TTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTGAGA-GAGAAGGAG 889
Query 892 ATGAAAGACAG-AGAAACTCCGACGTCAACGAGAT 925
| ||| | | | |||||||| || || | ||||||
Sbjct 890 ACGAACGTC-GCAGAAACTCAGATGTGATCGAGAT 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5