BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01905.1
Length=2604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322531 jgi|Araly1|322531|fgenesh1_pm.C_scaffold_5000075 1064 0.0
> Ahg322531 jgi|Araly1|322531|fgenesh1_pm.C_scaffold_5000075
Length=705
Score = 1064 bits (576), Expect = 0.0
Identities = 664/707 (94%), Gaps = 4/707 (1%)
Strand=Plus/Plus
Query 47 ATGTCTACAGAGATCGGTCATCTTCGTCGGAGATTAGTCGAGTTCTTGATTCAATCTACT 106
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCTACAGAGATCGGTCATCTTCGTCGGAGATTGGTCGAGTTCTTGATTCAATCTACT 60
Query 107 ACTCTACTCGAACTTCCTCCGATCGTTAAATATTCAGCTCTATCGCTATTCTTCGATCGA 166
|||| ||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 61 ACTCAACTTGAACTTCCTCCGATCGTTAAATACTCAGCTCTATCGCTCTTCTTTGATCGA 120
Query 167 TTTCGTCCTAATTTAGTCAGGTTTTTACAGAAAAAGAAAGCAGAACATTGGCTATTGCAA 226
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCGTCCAAATGTAGTCAGGTTTTTACAGAAAAAGAAAGCAGAACATTGGCTATTGCAA 180
Query 227 CCTTTGAATGAAAGCAATCTGCAGTTATTTGTGTTAATCTCCATTTGGATCTCATGTAAA 286
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTTTGACTGAGAGCAATCTGCAGTTATTTGTGTTAATCTCCATTTGGATCTCATGTAAA 240
Query 287 ATGCATTGTACACGAGGTTTATCGGTTCATAGT-TTGAAATCCTTTGGGGATAAAGTGAT 345
||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 241 ATGCATTGTACCCGAGGTTTATCGGTTCATAGTCTT-AAATCCTTTGGGGATATTGTGAT 299
Query 346 TACTGAGCAACTCTTCATGGTTCGCGATTTCTTGGATGCAGAACTGGTTTTTCTGAAGGT 405
||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 300 TACAGAGCAACTCTTCATGGTTCGCGATTTCTTAGATGCGGAACTAATTTTTCTGAAGGT 359
Query 406 TCTGAAATTTGAGATTGGCACTCTAAATATAGCTTATACACGGCTTGAAGATCTTCTTAT 465
| |||| |||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 360 TTTGAAGTTTGAGATAGGCACTCTAAATATAGCTTATACACTGCTTGAAGACCTTTTTAT 419
Query 466 TCAGTTCAAAGAAGTTGCAAAAGTTGGGGAACAGTTGAACTTTGAAGCATGTATGGACAT 525
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 420 TCAGTTCAAAGAAGTTGCAAAAGTTGGGGATCATTTGAACTTTGAAGCGTGTATGGACAT 479
Query 526 GATGGATCTTCTTTACGAGAAAGAGGACACATCCCTTCTTTATCA-ATCTTCAAAATCTC 584
|||||| ||||||||||| |||||||| |||||||||||||| || || |||||||||||
Sbjct 480 GATGGACCTTCTTTACGAAAAAGAGGAGACATCCCTTCTTTA-CAGATATTCAAAATCTC 538
Query 585 TGGCTGCTTCCATTTTGGTCTCTTCTTACATAATAACAGTGCCTAAACAGCAGTACGAAT 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 TGGCTGCTTCCATTTTGGTCTCTTCTTACATAATAACAGTGCCTAAACAGCAGTATGAAT 598
Query 645 TCCCTATTCTCCCCTGGGTTAAAATGGTGACAAATAAGGAAGAAAGGGAGGTGGTGGAGC 704
||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 599 TCCCTATCCTCCCCTGGGTTAAAATGGTGACAAATATGGAAGAAAAGGAAGTGGTGGAGC 658
Query 705 TTGTTGAATACATACTTGCTCATGTCCTTTACTCGAACTCTCCTTAA 751
|||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 659 TTGTTGGATACATACTTTCTCATTTCCTTTACTCGAACTCTCCTTAA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98196651610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5