BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01910.1
Length=2410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484109 jgi|Araly1|484109|fgenesh2_kg.5__101__AT2G01910.1 3657 0.0
Ahg312467 jgi|Araly1|312467|fgenesh1_pm.C_scaffold_1001247 808 0.0
> Ahg484109 jgi|Araly1|484109|fgenesh2_kg.5__101__AT2G01910.1
Length=2391
Score = 3657 bits (1980), Expect = 0.0
Identities = 2274/2412 (94%), Gaps = 36/2412 (1%)
Strand=Plus/Plus
Query 1 Actctcttctctgttgctctacctgttcttttctctctgttcattctcttttctttagct 60
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1 ACTCTCTTCTCTGTTG--CTACCTGTTC-TTTCTCTCTGTTCATTCCCTTTTCTTTAGCT 57
Query 61 taattcagcaaaaaatttatctttgtttctctct--tttgtttctttcCTCTGCAAAGT- 117
||||||||| || | ||||||||||||| |||||||||||||||||||||||
Sbjct 58 TAATTCAGC----AA---A--TTTGTTTCTCTCTACTTTGTTTCTTTCCTCTGCAAAGTA 108
Query 118 AAAGTTATGAGAGCTT-A--ATAATGTTTGTCTCATCTTCAAGCTTCAGATCTGATTCCT 174
||||| ||||||| || | |||||||||||||||||||||||||||||||||||| | |
Sbjct 109 AAAGTAATGAGAGTTTAATTATAATGTTTGTCTCATCTTCAAGCTTCAGATCTGATGCTT 168
Query 175 TGTTTCTACAAGTAATTGTCTCTTTCTTTTTCGATTAACCACCATTTCTGTGAAGAA-AA 233
||||||| | ||||||||||| ||||||||| |||||| |||||||| |||||| || ||
Sbjct 169 TGTTTCTGCTAGTAATTGTCTTTTTCTTTTTAGATTAATCACCATTTTTGTGAACAAGAA 228
Query 234 CC-TTTTTGCTTGCTTCAAGATTCGAGTGAGGAAAATTTTAGCTGAAAATGCTGGAAATT 292
|| |||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 229 CCAGAAAAGCTT--TTCAAGATTCGAGTGAGGAAAAATTTAGCTGAAAATGCTGGAAATT 286
Query 293 GGAAGTCCCAATGCTCTGTTTTTCCGTACGAATACTACTTGTAATAATCTTCTCCGTGAG 352
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 287 GGAAGTCCCAATGCTCTGTTTTTCCGTACGAACACTACTTGTAATAATCTTCTCCGTGAG 346
Query 353 CTTCAGAAAATATGGGTTGAAATTGGTGAGACTGAGACTGAGAAAGATAGAATGCTTATG 412
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 347 CTTCAGAAAATATGGGTTGAAATTGGTGAGAGTGAGACTGAGAAAGATAGGATGCTGATG 406
Query 413 GAATTAGAGAGAGAATGTCTTCAAATCTATCAAAGAAAAGTTGATGAGGCTGCAAATTCT 472
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 407 GAATTGGAGAGAGAATGTCTTCAAATCTATCAAAGAAAAGTTGACGAGGCTGCAAATTCT 466
Query 473 AAGGCAAAGCTTCATCAGTCTGTTGCATCAATAGAAGCTGAAGTTGCTTCTTTAATGGCT 532
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 467 AAAGCAAAGCTTCATCAGTCTGTTGCAGCAATAGAAGCTGAAGTTGCTTCTTTAATGGCT 526
Query 533 GCCCTTGGTGTGTTAAACATCAACTCACCGATTAAACTGGATAAAGGTTCAAAATCATTG 592
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 527 GCCCTTGGTGTGTTAAACATCAACTCACCGATTAAATTGGATAAAAGTTCAAAGTCATTG 586
Query 593 AAAGAAAAGCTTGCAGCTGTGACACCTCTAGTTGAGGAATTGAGAATTCAAAAAGAGGAG 652
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 587 AAAGAAAAGCTTGCAGCTGTGACTCCTCTAGTTGAGGAATTGAGAATTCAAAAAGAGGAG 646
Query 653 AGAATGAAGCAGTTTTCCGATATAAAGGCGCAAATTGAGAAGATTAGTGGGGAAATCTCA 712
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGAATGAAGCAGTTTTCCGATATAAAGGCGCAAATTGAGAAGATTAGTGGGGAAATCTCT 706
Query 713 GGATACAGTGACCATCTCAACAAGGCCATGAACATTTCATTGACTCTTGAAGAACAAGAC 772
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 707 GGATACAGTGACCATCTCAACAAGGCCATGAACATTTCCTTGACTCTCGAAGAACAAGAC 766
Query 773 TTGACTTTGAGGAACCTTAACGAGTATCAAACACATCTCCGCACACTTCAAAAGGAAAAG 832
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 767 TTGACTCTGAGGAAACTTAACGAGTATCAAACACATCTCCGCACGCTTCAAAAGGAAAAG 826
Query 833 TCTGATCGTCTCAACAAAGTGTTGGGTTATGTCAACGAAGTCCACGCACTATGCGGTGTT 892
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 827 TCTGATCGTCTCAACAAAGTCTTGGGTTATGTCAACGAAGTCCACGCACTATGCGGTGTT 886
Query 893 CTTGGAGTTGACTTTAGTCAAACAGTTAGTGCA-GTTCATCCAAGCTTGCATAGAACAGA 951
||||||||||||||||||||||||||| ||| | |||||||| ||||| ||||| |||||
Sbjct 887 CTTGGAGTTGACTTTAGTCAAACAGTTTGTG-AGGTTCATCCTAGCTTACATAGGACAGA 945
Query 952 CCAAGAGCAATCTACAAACATTAGTGATAGCACATTAGAGGGTCTTGAGCACATGATTCA 1011
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 946 CCAAGAGCAATCTACAAACATTAGTGATAGCACACTAGAGGGCCTTGAGCACATGATTCA 1005
Query 1012 AAAGCTTAAAACTGAAAGAAAATCCCGATTTCAAAAGCTAAAGGATGTAGTGGCTTCACT 1071
|||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1006 AAAGCTAAAAACTGAGAGAAAAGCCCGATTTCAAAAGCTAAAGGATGTAGTGGCTTCACT 1065
Query 1072 CTTCGAGCTATGGAATCTAATGGACACACCACAGGAAGACAGAACTAAATTTGGGAAAGT 1131
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1066 GTTCGAGCTATGGAACCTAATGGACACACCACAAGAAGAGAGAACTAAATTTGGAAAAGT 1125
Query 1132 TACTTATGTTGTAAGATCATCTGAAGCTAATATCACTGAGCCGGGAATCCTTTCGACCGA 1191
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1126 TACTTATGTTGTAAGATCATCTGAAGCTAATATCACTGAGCTGGGCATCCTTTCGACCGA 1185
Query 1192 AACAATTGAACAGGTATCTACGGAAGTGGACAGTCTCAGTAAACTGAAAGCAAGCAGAAT 1251
|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 1186 GACAATTGAACAGGTATCTGCAGAAGTGGAAAGTCTCAGTAAACTGAAAGCAAGCAGAAT 1245
Query 1252 GAAGGAGCTTGTAATGAAACGAAGATCCGAGTTAGAGGATCTTTGCAGACTAACTCACAT 1311
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1246 GAAGGAGCTTGTAATGAAACGAAGATCCGAGTTAGAAGATCTTTACAGACTAACTCACAT 1305
Query 1312 TCAACCTGACACAAGCACTTCCGCTGAGAAATCAACGGCATTAATAGATTCTGGATTAGT 1371
||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 1306 TCAACCTGACACAAGCACTTCTGCTGAGAAATCAACTGCCTTAATAGAATCTGGATTAGT 1365
Query 1372 GGACCCTTCAGAGCTTCTTGCAAATATTGAAATGCAAATAAACAAAATTAAAGACGAAGC 1431
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 1366 GGACCCTTCAGAGCTTCTTGGAAATATCGAAATGCAAATAAACAAAATTAAAGATGAAGC 1425
Query 1432 ACAGAGTCGAAAAGATATCATGGACAGAATTGACCGTTGGCTCTCTGCATGTGAAGAAGA 1491
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1426 ACAGAGCCGGAAAGATATCATGGACAGAATTGACCGTTGGCTCTCTGCATGTGAAGAGGA 1485
Query 1492 AAATTGGCTGGAAGAGTATAATCTGGATGAGAACCGGTATAGTGCTGGAAGAGGGGGACA 1551
||||||| |||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1486 AAATTGGTTGGAAGAGTATAATCTGGATGAGAACCGGTATAGCGCAGGAAGAGGTGGACA 1545
Query 1552 TGTAAACCTCAAGCGTGCAGAGCGAGCTCGGGTTACAATCAATAAGATCCCCGGAATGGT 1611
||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 1546 TGTAAACCTCAAGCGTGCAGAACGAGCCCGGGTTACTATCAATAAGATCCCTGGAATGGT 1605
Query 1612 TGACACTCTTATCAAGAAAACACTTGTGTGGGAAGAA-GACATGCAGAAGTCATTTCTAT 1670
||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 1606 TGACAATCTTATCAAGAAAACACTTGTGTGGGAA-AATGACATGCAGAATTCATTTCTAT 1664
Query 1671 ACGACGGTGTTCGATTGGTTAACATACTAGAAGACTATAAACTGACAAGGAAACAACAGG 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ACGACGGTGTTCGATTGGTTAACATACTAGAAGACTATAAACTGACAAGGAAACAACAGG 1724
Query 1731 AAGAGGAAAAGAAAAGATACAGGGATCAAAAGAAGAGGCAGGATCTCCTACTAACCCAAA 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 AAGAGGAAAAGAAAAGATACAGGGATCAAAAGAAGAGGCAGGATCTCCTACTAACCCAAA 1784
Query 1791 GGGAATCCATTTACGGATCAAAACCGAGTCCAAGAAGAAGCAGCAGCTTCAGAAAGCCCA 1850
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1785 GGGAATCCATTTACGGATCAAAACCAAGTCCAAGAAGAAGCAGCAGCTTCAGAAAGCCCA 1844
Query 1851 ATGGTTTCAACATTAGCAATGGGAATGGTTCAGTGCCTCCCACGCCTCGTAGAGGCTCGG 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1845 ATGGTTTCAACATTAGCAATGGGAATGGTTCAGTGCCTCCCACGCCTCGTAGAAGCTCGG 1904
Query 1911 TAGGGACAACAACTCCTGACGTTCTTCTAACCCCAAGATCTTACTCTGGTCATCATCGCC 1970
||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 1905 CAGGGACAACAACTCCTGACCTTCTTCTAACCCCGAGATCTTACTCAGGTCATCATCGCC 1964
Query 1971 AAAACGGGTATTTCAAAGAAGTTAGAAGACTCTCTACTACTCCCTTAAACTATGTGGCCA 2030
|||||||||||||||||||| |||| |||||| || ||||||| || |||||||||||||
Sbjct 1965 AAAACGGGTATTTCAAAGAATTTAGGAGACTCACTTCTACTCCATTGAACTATGTGGCCA 2024
Query 2031 TGCAAAAGGAAGATACTGTTTCTACTACCTACACATCGATTTATAGCTCTGAGCCAGACT 2090
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 TGCAAAAGGAAGATACAGTTTCTACTACCTACACATCGATTTATAGCTCTGAGCCAGACT 2084
Query 2091 CGCCTCTCCAAGGCTGACTTGACTCTCTTTTCCACCGGATTTGTGGAGTAATGTTAATGG 2150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 CGCCTCTCCAAGGCTGACTTGACTCTCTTTTCCACCGGATTTGTGGAGTAATGTTAATGT 2144
Query 2151 TaaaaaaaGAAGGAAGTGAAGAAGAAGGAAGGAGACTTGTGAATACAGAAGGTGACTGAC 2210
||| || ||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 2145 TAATAA--GAAGGAAGTGAAGAAGATGAAAGCAGACTTGTGAATACAGAAGGTGACTGAC 2202
Query 2211 TTTTAGGAGATATGGTGAGATAA-GAGTaaaaaaaaTAAATGTGAAATTTGTTATTCTTT 2269
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 2203 TTTTAGGAGATATGGTGAGATAAAGAGTAAAAAA--TAAATGTGAAATTTGTTATTCTTT 2260
Query 2270 AGAGGTTACAAGTTTTCTATTTTGAAGTGAAGAATACT---ATTGTTTTGTGTAATGC-C 2325
|||| ||||||||||| |||||||||||||| |||||| |||||||||||||||| |
Sbjct 2261 AGAGTTTACAAGTTTTATATTTTGAAGTGAAAAATACTTCTATTGTTTTGTGTAATGGTC 2320
Query 2326 AGTGTGAAAGTGTGTGAATGGTCATTGTTGTGCGTACGTATTTGTGTATAATATACGTAT 2385
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2321 -GTGTGAAAGTGTGTGAATGGTCATTCTTGTGCGTACGTATTTGTGTATAATATACGTAT 2379
Query 2386 TTGCTATATTTT 2397
||||||||||||
Sbjct 2380 TTGCTATATTTT 2391
> Ahg312467 jgi|Araly1|312467|fgenesh1_pm.C_scaffold_1001247
Length=1905
Score = 808 bits (437), Expect = 0.0
Identities = 862/1061 (81%), Gaps = 53/1061 (5%)
Strand=Plus/Plus
Query 1050 TAAAGGATGTAGTGGCTTCACTCTTCGAGCTATGGAATCTAATGGACACACCACAGGAAG 1109
|||||||||||| || |||||| ||||||||||||||||||||||||||| | || ||||
Sbjct 857 TAAAGGATGTAGCGGGTTCACTTTTCGAGCTATGGAATCTAATGGACACATCTCAAGAAG 916
Query 1110 ACAGAACTAAATTTGGGAA-AGTTACTTATGTTGTAAGATCATCTGAAGCTAATATCACT 1168
| |||||||||||| | || ||| | |||||||||||||||||||||| || ||||||||
Sbjct 917 AAAGAACTAAATTT-GCAAGAGTCAGTTATGTTGTAAGATCATCTGAATCTGATATCACT 975
Query 1169 GAGCCGGGA-ATCCTTTCGACCGAAACAATTGAACAGGTATCTACGGAAGTGGACAGTCT 1227
||||| | |||||||| || ||||||||||||||||| ||| | ||||| ||| | |
Sbjct 976 GAGCC-AAATATCCTTTCTACTGAAACAATTGAACAGGTGTCTGCAGAAGTAGACTCTTT 1034
Query 1228 CAGTAAACTGAAAGCAAGCAGAATGAAGGAGCTTGTAATGAAACGAAGATCCGAGTTAGA 1287
| ||| |||||||| || ||||||||||| ||||| |||||| |||| || ||||||||
Sbjct 1035 TAATAAGCTGAAAGCTAGTAGAATGAAGGAACTTGTGATGAAAAGAAGGTCTGAGTTAGA 1094
Query 1288 GGATCTTTGCAGACTAACTCACATTCAACCTGACACAAGCACTTCCGC-TGAGAAATCAA 1346
| ||||||||||| | |||||||| | || |||||||||| | | | |||||||||||
Sbjct 1095 GAATCTTTGCAGATTGGCTCACATTGAGGCTAACACAAGCACAT-CTCTTGAGAAATCAA 1153
Query 1347 CGGCATTAATAGATTCT-G--------GATTAGTGGACCCTTCAGAGCTTCTTGCAAATA 1397
| || || || |||||| | |||||||||||||||||||||||||| ||||||
Sbjct 1154 CTGCTTTGATTGATTCTGGTAATAAAAGATTAGTGGACCCTTCAGAGCTTCTTACAAATA 1213
Query 1398 TTGAAATGCAAATAAACAAAATTAAAGACGAAGCACAGAGTCGAAAAGATATCATGGACA 1457
||||| |||| ||||||||||| ||||| |||||||| || || ||||| || || || |
Sbjct 1214 TTGAATTGCATATAAACAAAATCAAAGAAGAAGCACATAGCCGGAAAGAAATAATCGATA 1273
Query 1458 GAATTGACCGTTGGCTCTCTGCATGTGAAGAAGAAAATTGGCTGGAAGAGTATAATCTGG 1517
| |||||||| ||||| ||||| |||||||| ||||| ||||| ||||| || |||| ||
Sbjct 1274 GGATTGACCGCTGGCTATCTGCGTGTGAAGAGGAAAACTGGCTAGAAGAATACAATCAGG 1333
Query 1518 ATGAGAA-CCGGTATAGTGCTGGAAGAGGGGGACATGTAAACCTCAAGCGTGCAGAGCGA 1576
|||| || ||||||||||||||||||||| ||||| ||||||||||||| ||||| |||
Sbjct 1334 ATGA-AACCCGGTATAGTGCTGGAAGAGGTGGACACGTAAACCTCAAGCACGCAGAACGA 1392
Query 1577 GCTCGGGTTACAATCAATAAGATCCCCGGAATGGTTGACACTCTTATCAAGAAAACACTT 1636
|| ||| | ||| | || |||||||| ||||||||||| ||| |||||||||||||||
Sbjct 1393 GCCCGGATCACAGTAAACAAGATCCCATCAATGGTTGACAATCTCATCAAGAAAACACTT 1452
Query 1637 GTGTGGGAAGAAGACATGCAGAAGTCATTTCTATACGACGGTGTTCGATTGGTTA-ACAT 1695
| ||||| || || | | ||| ||||||||||| || ||||||||||||| || |||
Sbjct 1453 TTATGGGAGGACGAAACACGGAAATCATTTCTATATGATGGTGTTCGATTGG-TATCCAT 1511
Query 1696 ACTAGAAGACTATAAACTGACAAGGAAACAACAGGAAGAGGAAAAGAAAAGATACAGGGA 1755
||| ||||| |||||| ||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 1512 ACTTGAAGATTATAAATTGACAAGGAAACAACAGGAGGAGGAAAAGAAACGATACCGGGA 1571
Query 1756 TCAAAAGAAGAGGCAGGATCTCCTACTAACCCA-AAGGGAATCCATTTACGGATCAAAAC 1814
||||||||||| ||| |||||| || ||| | |||||||| ||||||||||||||||
Sbjct 1572 TCAAAAGAAGATGCATGATCTCTTAATAA-AGAGGAGGGAATCAATTTACGGATCAAAAC 1630
Query 1815 CGAGTCCAAGAAGAAGCAGCAGCTTCAGAAAGCCCAATGGTTTCAACATTAGCAATGGGA 1874
|||||||||||||||||| |||| | | ||||||||| || | | | |||||||
Sbjct 1631 CGAGTCCAAGAAGAAGCAACAGCGTAAAAAAGCCCAACGG----A---T-A-CAATGGGG 1681
Query 1875 ATGGTTCAGTGCCTCCCACGCCTCGTAGAGGCTCGG-TAGG-GACAACAACT-CCTGACG 1931
||| || |||||||| |||||||| ||| ||| | | || | |||||| | || |||
Sbjct 1682 ATGCATCTGTGCCTCCTACGCCTCGCAGAAACTCAGCT-GGAG-CAACAAATACC-GACA 1738
Query 1932 TTCTTCTAACCCCAAGATCTTACTCTG-GTCATCATCGCCAAAACGGGTATTTCAAAGAA 1990
|| | | |||| ||||||||||| | | | ||||| |||||||| |||||||| |||
Sbjct 1739 TTATG--A-CCCCGAGATCTTACTC-GAG-C--CATCGTCAAAACGGATATTTCAAGGAA 1791
Query 1991 GTTAGAAGACTCTCTACTA-CTCCCTTAAACTATGTGGCCATGCAAAAGGAAGA-TACTG 2048
|| || |||||||| || | |||| || |||| ||||||||| | ||||||||| | |||
Sbjct 1792 GTAAGGAGACTCTCAAC-AGCTCCATTGAACTTTGTGGCCATACCAAAGGAAGACT-CTG 1849
Query 2049 TTTCTACTACCTACACATC-GATTTATAGCTCTGAGCCAGA 2088
| || || | |||||||| | |||| ||||||| |||||
Sbjct 1850 TCTCAAC-A--TACACATCAG-TTTACGGCTCTGAACCAGA 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90807144080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5