BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01913.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484111 jgi|Araly1|484111|fgenesh2_kg.5__103__AT2G01913.1 926 0.0
> Ahg484111 jgi|Araly1|484111|fgenesh2_kg.5__103__AT2G01913.1
Length=699
Score = 926 bits (501), Expect = 0.0
Identities = 646/712 (91%), Gaps = 25/712 (4%)
Strand=Plus/Plus
Query 58 ATGGACTTCGATTCCGCAGACAAACGAGAGAGTGTGGAGGAGACAGTGATGATGGAATAC 117
||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGACTTCGATTCCTCAGGCAAAAGAGAAAGTGTGGAGGAGACAGTGATGATGGAATAC 60
Query 118 GATGAAGAAACCAATCAATTCGACGTTGAATTTTGTCCGGTTGAGCATCCTATTGAACCG 177
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 61 GATGAAGAAACCAATCAATTCGACGTGGAATTCTGTCCCGTTGAGCATCCGGTTGAACCG 120
Query 178 GAGGAAGAAGATCGTCCGGTTAAATGTCCCGTACCAATATCATCTTCTCTCATCCACAAA 237
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 GAAGAAGAAGATCGTCCGGTTAAATGTCCCGTACCAATCTCATCTTCTCTCATTCACAAA 180
Query 238 CCAAAGGAGAAATCGAAACCGGGGTGGGTTAAACACAGAGCCAGCAGCTACGAAACTCCG 297
||| ||||||||| |||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 181 TCAACGGAGAAATCTAAACCGGGCTGGGTTAAACACAGAG-C--CAGCTACGAAACTCCG 237
Query 298 GTTTATCCACCGCCACGTCATCATGTACGTAACGTACGAAAGAGACACAACTCGTTTGAC 357
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 238 GTTTATCCACCGCCACGTCATCATGTCCGTAACGTACGTAAGAGACACAACTCGTTCGAC 297
Query 358 GTGGAAGGGAACAACAATTTCTTCACGAGATCTCATGATGATGACGAAACCACCTCTCGA 417
||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||
Sbjct 298 GTGGAAGGGAACAACAACTTGTTCACGAGATCTC---ATGATGACGAAACCACATCTCGA 354
Query 418 AGATCCAACGTCACGTTCTACCGAGTTCTTCAACAAGTTCAGGAGTTCGAGTCGTAACAA 477
|||||||| || ||| ||||||||||||||||||||||||| ||||||||| ||| ||
Sbjct 355 AGATCCAATGTTACGATCTACCGAGTTCTTCAACAAGTTCACGAGTTCGAGCCGT--GAA 412
Query 478 AATATCAAATCTC---T---TTGAGATGTTTATGTTGGGGTAA--T-GTAGTAGTTCTAT 528
| | ||||||||| | ||||| ||||||||||||| ||| | ||||||||| ||
Sbjct 413 ATTGTCAAATCTCTTTTGCGTTGAGGTGTTTATGTTGGGTTAAGGTAATAGTAGTTCGAT 472
Query 529 GTAGTACCAAAGTTTCGGTATACTTGTTATTTATATTGTTATTCGGTGATAACCGGTCCG 588
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 473 GTAGTACCAAAGTTTCGGTATACTTG----TTATATTGTTATTCGGTGATTACCGGTCCG 528
Query 589 GTCAGATTCGGTTAACAGC-TTAAAAAATGTTATAATTTCTACTTTTCTAGTTTCTTATG 647
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 529 GTCAGATTCGGTTAACAGCTTTAGAAAATGTTATAATTTCTACTTTTCTAGTTTCTTATG 588
Query 648 AGTGCATGGGCATTTTCAGTATAA-TCCTACGTTAGAATGGGCCGTGTTTTATGAAAGTC 706
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 589 AGTGCATGGGCATTTTCAGTATAAATCCTATTTTAGAATGGGCCGTGTTTTATGAAAGTC 648
Query 707 AATATATGGGCTTAACTGGGCTATACTT-TCTAAGTTCAAATAATTTGTTAT 757
|||||||||||||||||||||| ||||| | ||||| |||||||||| ||||
Sbjct 649 AATATATGGGCTTAACTGGGCTTTACTTAT-TAAGTCCAAATAATTTATTAT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5