BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01918.1
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484112 jgi|Araly1|484112|fgenesh2_kg.5__104__AT2G01918.1 1031 0.0
> Ahg484112 jgi|Araly1|484112|fgenesh2_kg.5__104__AT2G01918.1
Length=727
Score = 1031 bits (558), Expect = 0.0
Identities = 675/730 (92%), Gaps = 13/730 (2%)
Strand=Plus/Plus
Query 24 AAACGTGAATACATGGCGATTTCAAAGCCACCACCACTACATTTCACTTTCTTTCACAAT 83
||||||||||| ||||||||||||||||||||| | | |||| ||||||||||||||||
Sbjct 1 AAACGTGAATATATGGCGATTTCAAAGCCACCA-C-C-ACATATCACTTTCTTTCACAAA 57
Query 84 CAAGATTCTTCAATTGATACATCGGATTCAAACTTAGCACTTTCTATTGATACATCT--- 140
||||||||||||||||||||||||||||| |||||| || |||| ||||||||||||
Sbjct 58 CAAGATTCTTCAATTGATACATCGGATTCTAACTTAACATTTTCCATTGATACATCTAGA 117
Query 141 ---AG-A--AGACGAAGAGACGTTTTGCTCACAATTTCAGGTACACTAATCCCTCAACTG 194
|| | ||||||||||||||||||||| ||||||| || ||||||||||||||| ||
Sbjct 118 AGAAGAAGGAGACGAAGAGACGTTTTGCTCTCAATTTCGGGAACACTAATCCCTCAAGTG 177
Query 195 TTCTTCTTCGATCGCAAACGCTCTTCTTCTGCGAATGCCGCTGATTTTTTCAACTTCGGA 254
|||||||| ||||| ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 178 TTCTTCTTTGATCGTAAATGGTCAGCTTCTGCGAATGCCGCTGATTTTTTCAACTTCGGC 237
Query 255 GCTCCTCCACCTGAGCCTGAACGCACCGTGGAACTTGCTCAGGAAGGATTAAGAAAAAAT 314
||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 238 GCTACTCCACCTGAACCTGAACGCACCGTCGAACTTGCTCAGGAAGGGTTAAGAAAAAAT 297
Query 315 GCAGAGAATATAAAAAGAATCAAGGAGATTATGATAGAAAAGAAGTTGTGGAAAGAAGGA 374
||| | |||||||||||||| || ||||| ||||||||||| || || ||||||||||||
Sbjct 298 GCAAAAAATATAAAAAGAATTAAAGAGATGATGATAGAAAATAAATTATGGAAAGAAGGA 357
Query 375 GGGAAAGAGCTAAGGAGAAGTGCATCAAACATGAAGCAAGACTTTTACTTAATCATCCAA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGGAAAGAGCTAAGGAGAAGTGCATCAAACATGAAGCAAGACTTTTACTTAATCATCCAA 417
Query 435 GCAAAGCCTCCTAAGGATAGACCTCTTTTTAGGTCTCTTTATTCCTCTCTCTTTAACTCA 494
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 GCAAAGCCTCCTACGGATAGACCTCTTTTTAGGTCTCTTTATTCCTCTCTCTTTAATTCA 477
Query 495 ATCACCAAGATGGATTATGCAGCTAGAGATGGAGATGAAACTAAGGTGTTGGAGTACTAT 554
||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 478 ATCACCAAGATGGATTATGCAGCAAGAGATGAAGATGAAACTAAGGTATTGGAGTACTAT 537
Query 555 ATTAATATTGTTGCAATCCTCGATGATATCTTCCCTCGAATTTAATTTCGAACAAT-ATA 613
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 AAGAATATTGTTGCAATCCTCGATGATATCTTCCCTCGAATTTAATTTCGAACAATAATA 597
Query 614 ATATTAGTTTAGGCAATCGATTCGCATTTGTTGTCATGTTCTTTCTTGTCTATCCAAAAG 673
|||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 598 ATATTAATTTAGGCAATCAATTCTCGTTTGTTGTCATGTTCTTTCTTGTCTATCCAAAAG 657
Query 674 AAAACACTAGTGAAAATACAAGTGACAAGAGAAAAAGTTGGCAAATGTTTTTTGTACGAT 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAAACACTAGTGAAAATACAAGTGACAAGAGAAAAAGTTGGCAAATGTTTTTTGTACGAT 717
Query 734 TTATCTTGTC 743
|||||| |||
Sbjct 718 TTATCTAGTC 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27372254406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5