BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01920.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935920 jgi|Araly1|935920|scaffold_500111.1 1264 0.0
Ahg920365 jgi|Araly1|920365|scaffold_101646.1 139 3e-32
> Ahg935920 jgi|Araly1|935920|scaffold_500111.1
Length=973
Score = 1264 bits (684), Expect = 0.0
Identities = 859/943 (91%), Gaps = 14/943 (1%)
Strand=Plus/Plus
Query 7 CGAAAAATGAAGTTGTGGAGACGCGTCTCCGGAGCTATAAAGGACAAACTCAGTCTCATC 66
|||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 15 CGAAAAATGAAGTTATGGAGACGCACCGCCGGAGCTATAAAGGACAAACTCAGTCTAATC 74
Query 67 ACCGCGACGGATGAAAAATTCACGGCGGCGGTTATCAAAGCGACGAGTCATAACGATGTC 126
|| ||| | ||||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 75 ACGGCGGCTGATGAAAAATTCACGGCGGCGATTATCAAAGCGACGAGTCACAACGATCTC 134
Query 127 TCAATGGACATCGAAAACGTTCAATTCATCTATAGATACATACAGAGCAACCCTTCCAGT 186
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 135 TCAATGAACATCGAAAACGTTCAATTCATCTATAGATATTTACAGAGCAACCCTTCTAGT 194
Query 187 TTCAAACCAATTATACGCGCCGTCTCGTTACGCGTGGAACACACGCGTAACTGGACGGTG 246
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 195 TTCAAACCAATCATACGCGCCGTCTCGTTACGCGTGGAACGCACGCGTAATTGGACGGTG 254
Query 247 GCTTTGAAATGTTTGATGTTATTGCACGGCTTGTTCTTCTCCGGAATCATGACCGTCGAT 306
||||||||||||||||||||||| |||||||||||||| |||||||||||| | || |||
Sbjct 255 GCTTTGAAATGTTTGATGTTATTACACGGCTTGTTCTTTTCCGGAATCATGGCAGTTGAT 314
Query 307 TCGATCGGACGGTTACCGTTCGATCTTTCGGGTTTCGGGAGAAGGAAATCTCGGTTTAGT 366
|| |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 315 TCTATCGGACGGTTACCGTTCGATCTTTCCGATTTCGGGAAAAGGAAATCTCGGTTTAGT 374
Query 367 AGAACCGGTCGGTTTAACATCTTCGTTCGCGCTTA--TTTCATGTTTCTTGACGAAAGAT 424
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 375 AGAACCGGTCGGTTTAACATTTTCGTTCGCGCTTATTTTTCA--TTTCTTGACGAAAGAT 432
Query 425 CGATTCTCTATTATAACAAGAACATGATTCG-ATTAGAGATTATCGTTAAGATGCAACGA 483
||||||||| ||| || |||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct 433 CGATTCTCTTTTACAATAAGAACATGATTCGAATT-GAGATCATCGTTAAAATGCAACGA 491
Query 484 ATAGTTGATTCATTGATGAGAATCAAACCAATTGGTGAAACACCTCTTGTAATCGAAGCT 543
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 492 ATCGTTGATTCATTGATGAGAATCAAGCCGATTGGTGAAACGCCTCTTGTAATCGAAGCT 551
Query 544 ATGGAATATGTAATCAGCGAGGTTGTTTTGATTAACGGTCATATATGCCGCGGATTCGCG 603
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 552 ATGGAATATGTAATCAGCGAGGTTGTTGTGATTAACGGTCATATCTGCCGCGGATTCGCC 611
Query 604 GGTTTCTTATCCGATGTACAGTCGAATATGCTCGAGATATCGTCCGCGGAGGCGGATTTG 663
||||||||||| |||| |||||||||||||| ||||||||||| || |||||||| ||
Sbjct 612 AGTTTCTTATCCAATGTTCAGTCGAATATGCTGGAGATATCGTCAGCAGAGGCGGAATTA 671
Query 664 GCGATGAATATCGTGGCGAAATCTTTGTCGCAGAGAGAAAAACTCTTCAAGTATTTCGAA 723
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 672 GCGATGAAGATCGTGGCGAAATCTTTGTCGCAGAGAGAACAACTCTTCAAGTATTTCGAA 731
Query 724 TTCTGTAGAGGTTTTGGTGTCACCAACGCTCAAGAAACCTCTAATATCTTGCGAATCACG 783
|||||||||| ||||||||||||||||||||| |||| ||||||| || | |||||||||
Sbjct 732 TTCTGTAGAGATTTTGGTGTCACCAACGCTCATGAAATCTCTAATTTCGTACGAATCACG 791
Query 784 GAATCTCAAATGATAGTTCTCGACAAGCTTCTCCATATCGCCCCCGAGTTAGATTGGAAA 843
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 792 GAATCTCAAGTGATAGTGCTCGACAAGCTTCTCCATATCGCCCCCGAATTAGATCGGAAG 851
Query 844 GCCGCAAAAGTAACGCCGGTAACCGCGGCGGATATGG------TGGATTTGGTGACCAGC 897
|||||||||||||| |||||||||||||| ||||||| |||||||||| |||| |
Sbjct 852 GCCGCAAAAGTAACACCGGTAACCGCGGCAGATATGGCGGAGGTGGATTTGGTTACCA-C 910
Query 898 -GAGGAGCGCTCTAATACTCCATCAGATTTTCTTACCTTCTAA 939
|||||| | ||||||| |||||||||||| ||| |||||||
Sbjct 911 TGAGGAGTGTTCTAATAGTCCATCAGATTTAATTAGCTTCTAA 953
> Ahg920365 jgi|Araly1|920365|scaffold_101646.1
Length=1072
Score = 139 bits (75), Expect = 3e-32
Identities = 180/227 (79%), Gaps = 21/227 (9%)
Strand=Plus/Plus
Query 217 CGCGTGGAACACACGCGTAA-CTGGACGGTGGCTTTGAAATGTTTGATGTTATTGCACGG 275
|||||| ||| |||||| || |||| |||| || || ||| | || ||| || |||||||
Sbjct 223 CGCGTGAAACGCACGCG-AAGCTGGGCGGTTGCGTTAAAAGGCTTAATGCTAATGCACGG 281
Query 276 CTTGTTCTTCTCCG-GAATCATGACCGT---CGATTCGATCGGACGGTTACCGTTCGATC 331
||| ||| ||| | || || ||||| ||| |||||||||||||||||||||||||
Sbjct 282 CTTCTTC--CTCTGTAAAACA--ACCGTCGCCGAATCGATCGGACGGTTACCGTTCGATC 337
Query 332 TTTCGGGTTTCGGGAGAAGGAAAT-CTCGGTTTA-GTAG-AA--CCGGTCGGTTTAA-CA 385
||||| ||||||| ||||| | | | ||| ||| | || || ||||| ||||||| |
Sbjct 338 TTTCGAGTTTCGGC-GAAGGTAGTTCACGGATTATG-AGCAAATCCGGTGGGTTTAATC- 394
Query 386 TCTTCGTTCGCGCTTATTTCATGTTTCTTGA-CGAAAGATCGATTCT 431
||||||| |||||||||||| ||||||||| |||| ||||||||||
Sbjct 395 TCTTCGTACGCGCTTATTTCGCGTTTCTTGATCGAA-GATCGATTCT 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5