BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G01920.1 Length=939 Score E Sequences producing significant alignments: (Bits) Value Ahg935920 jgi|Araly1|935920|scaffold_500111.1 1264 0.0 Ahg920365 jgi|Araly1|920365|scaffold_101646.1 139 3e-32 > Ahg935920 jgi|Araly1|935920|scaffold_500111.1 Length=973 Score = 1264 bits (684), Expect = 0.0 Identities = 859/943 (91%), Gaps = 14/943 (1%) Strand=Plus/Plus Query 7 CGAAAAATGAAGTTGTGGAGACGCGTCTCCGGAGCTATAAAGGACAAACTCAGTCTCATC 66 |||||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||| Sbjct 15 CGAAAAATGAAGTTATGGAGACGCACCGCCGGAGCTATAAAGGACAAACTCAGTCTAATC 74 Query 67 ACCGCGACGGATGAAAAATTCACGGCGGCGGTTATCAAAGCGACGAGTCATAACGATGTC 126 || ||| | ||||||||||||||||||||| ||||||||||||||||||| |||||| || Sbjct 75 ACGGCGGCTGATGAAAAATTCACGGCGGCGATTATCAAAGCGACGAGTCACAACGATCTC 134 Query 127 TCAATGGACATCGAAAACGTTCAATTCATCTATAGATACATACAGAGCAACCCTTCCAGT 186 |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 135 TCAATGAACATCGAAAACGTTCAATTCATCTATAGATATTTACAGAGCAACCCTTCTAGT 194 Query 187 TTCAAACCAATTATACGCGCCGTCTCGTTACGCGTGGAACACACGCGTAACTGGACGGTG 246 ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 195 TTCAAACCAATCATACGCGCCGTCTCGTTACGCGTGGAACGCACGCGTAATTGGACGGTG 254 Query 247 GCTTTGAAATGTTTGATGTTATTGCACGGCTTGTTCTTCTCCGGAATCATGACCGTCGAT 306 ||||||||||||||||||||||| |||||||||||||| |||||||||||| | || ||| Sbjct 255 GCTTTGAAATGTTTGATGTTATTACACGGCTTGTTCTTTTCCGGAATCATGGCAGTTGAT 314 Query 307 TCGATCGGACGGTTACCGTTCGATCTTTCGGGTTTCGGGAGAAGGAAATCTCGGTTTAGT 366 || |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| Sbjct 315 TCTATCGGACGGTTACCGTTCGATCTTTCCGATTTCGGGAAAAGGAAATCTCGGTTTAGT 374 Query 367 AGAACCGGTCGGTTTAACATCTTCGTTCGCGCTTA--TTTCATGTTTCTTGACGAAAGAT 424 |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 375 AGAACCGGTCGGTTTAACATTTTCGTTCGCGCTTATTTTTCA--TTTCTTGACGAAAGAT 432 Query 425 CGATTCTCTATTATAACAAGAACATGATTCG-ATTAGAGATTATCGTTAAGATGCAACGA 483 ||||||||| ||| || |||||||||||||| ||| ||||| |||||||| ||||||||| Sbjct 433 CGATTCTCTTTTACAATAAGAACATGATTCGAATT-GAGATCATCGTTAAAATGCAACGA 491 Query 484 ATAGTTGATTCATTGATGAGAATCAAACCAATTGGTGAAACACCTCTTGTAATCGAAGCT 543 || ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 492 ATCGTTGATTCATTGATGAGAATCAAGCCGATTGGTGAAACGCCTCTTGTAATCGAAGCT 551 Query 544 ATGGAATATGTAATCAGCGAGGTTGTTTTGATTAACGGTCATATATGCCGCGGATTCGCG 603 ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 552 ATGGAATATGTAATCAGCGAGGTTGTTGTGATTAACGGTCATATCTGCCGCGGATTCGCC 611 Query 604 GGTTTCTTATCCGATGTACAGTCGAATATGCTCGAGATATCGTCCGCGGAGGCGGATTTG 663 ||||||||||| |||| |||||||||||||| ||||||||||| || |||||||| || Sbjct 612 AGTTTCTTATCCAATGTTCAGTCGAATATGCTGGAGATATCGTCAGCAGAGGCGGAATTA 671 Query 664 GCGATGAATATCGTGGCGAAATCTTTGTCGCAGAGAGAAAAACTCTTCAAGTATTTCGAA 723 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 672 GCGATGAAGATCGTGGCGAAATCTTTGTCGCAGAGAGAACAACTCTTCAAGTATTTCGAA 731 Query 724 TTCTGTAGAGGTTTTGGTGTCACCAACGCTCAAGAAACCTCTAATATCTTGCGAATCACG 783 |||||||||| ||||||||||||||||||||| |||| ||||||| || | ||||||||| Sbjct 732 TTCTGTAGAGATTTTGGTGTCACCAACGCTCATGAAATCTCTAATTTCGTACGAATCACG 791 Query 784 GAATCTCAAATGATAGTTCTCGACAAGCTTCTCCATATCGCCCCCGAGTTAGATTGGAAA 843 ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||| Sbjct 792 GAATCTCAAGTGATAGTGCTCGACAAGCTTCTCCATATCGCCCCCGAATTAGATCGGAAG 851 Query 844 GCCGCAAAAGTAACGCCGGTAACCGCGGCGGATATGG------TGGATTTGGTGACCAGC 897 |||||||||||||| |||||||||||||| ||||||| |||||||||| |||| | Sbjct 852 GCCGCAAAAGTAACACCGGTAACCGCGGCAGATATGGCGGAGGTGGATTTGGTTACCA-C 910 Query 898 -GAGGAGCGCTCTAATACTCCATCAGATTTTCTTACCTTCTAA 939 |||||| | ||||||| |||||||||||| ||| ||||||| Sbjct 911 TGAGGAGTGTTCTAATAGTCCATCAGATTTAATTAGCTTCTAA 953 > Ahg920365 jgi|Araly1|920365|scaffold_101646.1 Length=1072 Score = 139 bits (75), Expect = 3e-32 Identities = 180/227 (79%), Gaps = 21/227 (9%) Strand=Plus/Plus Query 217 CGCGTGGAACACACGCGTAA-CTGGACGGTGGCTTTGAAATGTTTGATGTTATTGCACGG 275 |||||| ||| |||||| || |||| |||| || || ||| | || ||| || ||||||| Sbjct 223 CGCGTGAAACGCACGCG-AAGCTGGGCGGTTGCGTTAAAAGGCTTAATGCTAATGCACGG 281 Query 276 CTTGTTCTTCTCCG-GAATCATGACCGT---CGATTCGATCGGACGGTTACCGTTCGATC 331 ||| ||| ||| | || || ||||| ||| ||||||||||||||||||||||||| Sbjct 282 CTTCTTC--CTCTGTAAAACA--ACCGTCGCCGAATCGATCGGACGGTTACCGTTCGATC 337 Query 332 TTTCGGGTTTCGGGAGAAGGAAAT-CTCGGTTTA-GTAG-AA--CCGGTCGGTTTAA-CA 385 ||||| ||||||| ||||| | | | ||| ||| | || || ||||| ||||||| | Sbjct 338 TTTCGAGTTTCGGC-GAAGGTAGTTCACGGATTATG-AGCAAATCCGGTGGGTTTAATC- 394 Query 386 TCTTCGTTCGCGCTTATTTCATGTTTCTTGA-CGAAAGATCGATTCT 431 ||||||| |||||||||||| ||||||||| |||| |||||||||| Sbjct 395 TCTTCGTACGCGCTTATTTCGCGTTTCTTGATCGAA-GATCGATTCT 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34844346138 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5