BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01930.1
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484115 jgi|Araly1|484115|fgenesh2_kg.5__107__AT2G01930.1 1459 0.0
Ahg471648 jgi|Araly1|471648|fgenesh2_kg.1__1602__AT1G14685.1 307 1e-82
> Ahg484115 jgi|Araly1|484115|fgenesh2_kg.5__107__AT2G01930.1
Length=1183
Score = 1459 bits (790), Expect = 0.0
Identities = 1096/1233 (89%), Gaps = 64/1233 (5%)
Strand=Plus/Plus
Query 19 cttctctttcctctctcttctatctttctttctctttctcaatctctctcagg-tt-tct 76
||||||||| | ||||| ||| |||||||||||||||| |||||||||||||| || |||
Sbjct 1 CTTCTCTTT-C-CTCTC-TCT-TCTTTCTTTCTCTTTCCCAATCTCTCTCAGGTTTCTCT 56
Query 77 ct-ctc-ctctctcCAGGAGGTCAAAAAATTCTTTAAAGAGCCGTTTAGACCAAACCCAT 134
|| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 57 CTCCTCTCTCTCTCCAGGAGGTCAAAAAATTCCTTAAAGAGCCGTTTAGACCAAACCCAT 116
Query 135 TTTTATAATCATCAATGGACGATGATGGATTTCGCAATTGGGGATACTATGAACCAGCGG 194
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GTTTATAATCA-CAATGGATGATGATGGATTTCGCAATTGGGGATACTATGAACCAGCGG 175
Query 195 CTGCTTCTTCGTTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACTATTGACCGGAACA 254
||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 176 CTG---CTTCATTTAAAGGTAATCTTGGTTTGCAGCTTATGTCTACTATTGACCGGAACA 232
Query 255 CTAAACCGTTTTTACCCGGTCGTGAATCGAATCTTATGATCGGTTCTAACGGTTCGTATC 314
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 233 CTAAACCGTTTTTACCCGGGCGTGAATCGAATCTGATGATCGGTTCAAACGGTTCGTATC 292
Query 315 ACTCTCGAGAGCAAGACATGAACTATAGCTGGATTAATCAACCAAAGGACAACAAGTTCT 374
|| | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 293 ACCCGCGAGAGCACGACATGAACTATAGCTGGATTAATCAACCCAAGGACAACAAGTTCT 352
Query 375 TCAACATGTTGCCTATAAGTACACCGAGTTATAGTAATGTGTTGTCGGAAACATCTGGTT 434
||||||||||||||||||| || |||| ||| | | |||| |||| |||||||||||||
Sbjct 353 TCAACATGTTGCCTATAAGCACCCCGAATTACGGGAGTGTGATGTCCGAAACATCTGGTT 412
Query 435 CGAATTCGATTCAGATGATACATCAACCGGTTTTGAATTCATCCCGGTTTGAGGAGAATC 494
|||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 413 CGAATTCGATGCAGATGATACATCAACCGGTTGTGAACTCATCCCGGTTTGAGGAGATTC 472
Query 495 CGATTCCTCCTCCTGCTCCTTGTGAAGAG--CAGACTGGTAAGAAGAGAAAGATGAGAGG 552
|||| ||||||| || | | || | ||| || ||||||||||||||||||||||
Sbjct 473 CGATCCCTCCTCGTGAAGAT-GA-AATCGTTCAGCCTAGTAAGAAGAGAAAGATGAGAGG 530
Query 553 CAGCATCGCAACACCAACGGTACCGAAAGCTAAGAAGATGCGTAAACCGAAAGAAGAGAG 612
|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 531 TAGCATCTCAACACCAACAATACCGAAAGCTAAGAAGATGCGTAAACCGAAAGAGGAGCG 590
Query 613 AGATGTTACTAACAACAATGTTCAGCAGCAGCAGCAGCGTGTGAAACCGGTTAAGAAGAG 672
|||||| ||| | ||||||||| | ||||||| | | |||||||||||||||||||
Sbjct 591 CGATGTTGCTAGTAGCAATGTTCA--A-CAGCAGC-GT-T-TGAAACCGGTTAAGAAGAG 644
Query 673 TGTTGATCTTGTGATTAACGGTGTGAGTATGGACATTTCTGGTTTACCTGTACCGGTTTG 732
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TGTTGATCTTGTGATTAATGGTGTGAGTATGGACATTTCTGGTTTACCTGTACCGGTTTG 704
Query 733 TACTTGTACTGGAACTCCTCAACAATGTTACCGTTGGGGTTGCGGCGGATGGCAATCCGC 792
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 705 CACTTGTACTGGAACTCCTCAGCAATGTTACCGTTGGGGATGTGGCGGATGGCAATCCGC 764
Query 793 TTGTTGTACGACTAACATTTCGGTGTATCCATTACCGATGAGTACTAAGCGACGCGGTGC 852
|||||| || |||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 765 TTGTTGCACAACTAACATTTCGGTGTATCCTTTACCGATGAGTACTAAGAGACGCGGCGC 824
Query 853 AAGGATTTCGGGTAGGAAGATGAGTCAAGGCGCGTTTAAGAAGGTTCTTGAGAAGTTATC 912
||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| |
Sbjct 825 AAGGATTTCAGGTAGGAAGATGAGTCAAGGCGCGTTTAAGAAGGTCCTAGAGAAATTAGC 884
Query 913 AACAGAAGGTTATAGCTTTGGGAATGCGATTGATTTGAAGTCTCATTGGGCTAGACATGG 972
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 885 AACAGAAGGTTATAGCTTTGGGAATGCGATTGATTTGAAGAGTCATTGGGCTAGACATGG 944
Query 973 AACCAATAAGTTTGTCACGATCAGATAAAGTTTGAAAAGCTCTTGTTTTTCTTCATTGAT 1032
||||||||||||||||||||||||||| || | | | | ||
Sbjct 945 AACCAATAAGTTTGTCACGATCAGATA--GTC--A-----T-T-G---------AT---- 980
Query 1033 CGTGTATATAACAACAAAACT-GTGACCTTTGTTTTTCCTTCTTC-T-T-CAAGGTAACT 1088
|||||||||| |||||| || ||||||||||||| |||||||| | | ||||||||||
Sbjct 981 CGTGTATATA-CAACAA--CTTGTGACCTTTGTTTC-CCTTCTTCCTCTTCAAGGTAACT 1036
Query 1089 TCTTCGTTTTTAGGGCTTGA-TCATATCTTAATTCATATTCTGTT-TTGTTTGTTT-GAA 1145
|||||| ||| |||| |||| ||||||||||||||||||||| || || ||| ||| | |
Sbjct 1037 TCTTCGGTTT-AGGGTTTGAATCATATCTTAATTCATATTCT-TTCTT-TTTCTTTTGCA 1093
Query 1146 ACTATTTCATTCAGCTTTAGGT-TTGAAATGTTGACTTGTAACATTAGATGTTGTTTTGA 1204
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1094 ACTATTTCATTCATCTTTAGGTCTT-AAATGTTGACTTGTAACATTAGATGTTGTTTTGA 1152
Query 1205 TAAAAAATGTTGTTATGTTAAACAATTTTAATG 1237
||||| ||||||||||||||||||||||||||
Sbjct 1153 TAAAA--TGTTGTTATGTTAAACAATTTTAATG 1183
> Ahg471648 jgi|Araly1|471648|fgenesh2_kg.1__1602__AT1G14685.1
Length=1326
Score = 307 bits (166), Expect = 1e-82
Identities = 291/351 (83%), Gaps = 10/351 (3%)
Strand=Plus/Plus
Query 653 GTGAAACCGGTTAAGAAGAGTGTTGATCTT-GTGATTAACGGTGTGAGTATGGACATTTC 711
|||||||||| |||||| ||||| ||| || |||||||| || |||||||||||||||||
Sbjct 704 GTGAAACCGGCTAAGAAAAGTGTCGAT-TTGGTGATTAATGGAGTGAGTATGGACATTTC 762
Query 712 TGGT-TTACCTGTACCGGTTTGTACTTGTACTGGAACTCCTCAACAATGTTACCGTTGGG 770
||| || ||||| ||| | || ||||| |||||| ||||||| ||||| ||||||||||
Sbjct 763 GGGTCTT-CCTGTCCCGATCTGCACTTGCACTGGAGCTCCTCAGCAATGCTACCGTTGGG 821
Query 771 GTTGCGGCGGATGGCAATCCGCTTGTTGTACGACTAACATTTCGGTGTATCCATTACCGA 830
| || ||||| ||||| || || |||||||| || ||||| ||| || ||||||| || |
Sbjct 822 GATGTGGCGGTTGGCAGTCTGCGTGTTGTACCACAAACATCTCGATGCATCCATTGCCAA 881
Query 831 TGAGTACTAAGCGACGCGGTGCAAGGATTTCGGGTAGGAAGATGAGTCAAGGCGCGTTTA 890
|||||||||| || || || || ||||| || || |||||||||||||||||||||||||
Sbjct 882 TGAGTACTAAACGCCGTGGAGCGAGGATCTCCGGAAGGAAGATGAGTCAAGGCGCGTTTA 941
Query 891 AGAAGGTTCTTGAGAAGTTATCAACAGAAGG-TTATAGCTTTGGGAATGCGATTGAT-TT 948
|||||||||||||||| || | | || || || || |||||||||| |||||||| ||
Sbjct 942 AGAAGGTTCTTGAGAAACTAGCTTCTGATGGGTT-TAACTTTGGGAATCCGATTGATCTT 1000
Query 949 GA-AGTCTCATTGGGCTAGACATGGAACCAATAAGTTTGTCACGATCAGAT 998
| || | |||||||| ||||||||||| || ||||| ||||| |||||||
Sbjct 1001 AAGAG-C-CATTGGGCAAGACATGGAACTAACAAGTTCGTCACAATCAGAT 1049
Score = 246 bits (133), Expect = 2e-64
Identities = 313/394 (79%), Gaps = 36/394 (9%)
Strand=Plus/Plus
Query 20 ttctctttcctctctctt-ctatctttctttctcttt-ctcaatctctctcaggtttctc 77
|||||| ||||||||||| | || || |||||||| | ||||||||||||||||||||
Sbjct 75 TTCTCTCTCCTCTCTCTTCCCCTC-CTC-TTCTCTTTCCCCAATCTCTCTCAGGTTTCTC 132
Query 78 tctcctctct--cCAGGAGGTC-AAAAAATT-CTTTAAAGAG----CCG-TTTAGACCAA 128
| |||||||| |||| ||| | |||||||| | |||||||| ||| ||| | |
Sbjct 133 TTTCCTCTCTCACCAGAAGGGCAAAAAAATTCCCTTAAAGAGTCCCCCGTTTTTG-TTTA 191
Query 129 ACCCAT-TT-TTA-TA-ATC-AT-CAATGGACGATGATGGATTTCGCAATTGGGGATACT 182
|||| | || | | || ||| | |||||| || ||||| |||||||||||||| ||||
Sbjct 192 ACCCCTCTTCTCATTAGATCTTTGAAATGGATGACGATGGGTTTCGCAATTGGGGTTACT 251
Query 183 ATGAACCAGCGGCTGCTTCTTCGTTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACTA 242
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 252 ATGAACCAGCGGCTGCTAC--C-TTTAAAGGTAATCTCGGTTTGCAGCTTATGTCTACCA 308
Query 243 TTGACCGGAACACTAAACCGTTTTTACCCGGTCGTGAATCGAATCTTATGATCGGTTCTA 302
|||| ||||||||||||||||||||||| || ||||| ||||||| |||||||| |||
Sbjct 309 TTGATCGGAACACTAAACCGTTTTTACCTGGCCGTGACCCGAATCTAATGATCGGGCCTA 368
Query 303 ACGGTTCGTATCACTCTCGA-GAGCA----AG--ACATGAACTATAGCTGGATTAATCAA 355
| || || |||||| | | | |||| | |||||| ||| | |||||||| |||
Sbjct 369 ATGGGTCATATCAC-CACCAAGAGCCTCCTATCCACATGAGCTACAATTGGATTAACCAA 427
Query 356 CCA-AAGGACAACAAGTTCTTCAACATGTTGCCT 388
| | ||||| || ||||||||| |||||||||
Sbjct 428 C-AGAAGGATAA---GTTCTTCAATATGTTGCCT 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5