BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01940.3
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484116 jgi|Araly1|484116|fgenesh2_kg.5__108__AT2G01940.1 2761 0.0
Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1 361 1e-98
> Ahg484116 jgi|Araly1|484116|fgenesh2_kg.5__108__AT2G01940.1
Length=1849
Score = 2761 bits (1495), Expect = 0.0
Identities = 1750/1868 (94%), Gaps = 37/1868 (2%)
Strand=Plus/Plus
Query 16 TATgagagagaaatagg-tttttgaagaagagtcaaaatatatacccaaagagagagcta 74
||||||||||||||||| ||||||| |||||||| || | ||| | || |||||||||
Sbjct 1 TATGAGAGAGAAATAGGTTTTTTGATGAAGAGTC--AA-A-ATA-GC-AA-AGAGAGCTA 53
Query 75 gagagagagagaCTCAAGAAAATTAAAAAGCTTTCATCATATTAACATAAGAGAAACTTT 134
||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 54 GAGTGAGAGAGACCCAAAAAAATTAAAAAGCTTTCATCATATTAACATAAGAG-AACTTT 112
Query 135 GAAGAGCCTAAGAAAAAGTTTTGAAAAGCCTTTGTTGCAGAAAGCTTAAAAGAACTTTTT 194
|||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 113 GAAGAGCCTACCAAAAAG-TTTGAAAAGCCTTTGTTGCAGAAAGCTTAAGAGAGCTTTTT 171
Query 195 CTCTCCCCCTATA--TC----TCTCTTTATCACCCTTCCTCTTCTTTGTAAAGCTGAATC 248
||||||||||||| || ||||||||| ||| ||||||||||||||||||||||| |
Sbjct 172 CTCTCCCCCTATATCTCTATTTCTCTTTATTACCTTTCCTCTTCTTTGTAAAGCTGAA-C 230
Query 249 TC-CCACTATCTCTTCTTCTTTCAtttttttttttttttGGTCTTTGGGCCTTGTTCTTT 307
| ||||||||||||||||||||| | ||||||||| |||| |||| |||||| |||
Sbjct 231 CCTCCACTATCTCTTCTTCTTTCA---TAATTTTTTTTT-GTCTCTGGGTCTTGTTGTTT 286
Query 308 CATCAAATCAATCTCTAGAATCCAAATACAATAAAGTC-AAAAAGAAAGATCAAGAAAAG 366
|||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 287 CATCAAATCAATCTCTAGTATCCAAATACAATAAAGTCAAAAAAGAGAGATCAAG-AAAG 345
Query 367 TAGAGTAATTGATGAGAACAGATCAAGTGATGTTGTCCAACAAGAACACAAACACATGTT 426
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TATAGTAATTGATGAGAACAGATCAAGTGATGTTGTCCAACAAGAACACAAACACATGTT 405
Query 427 GTGTGGTTTCTTCTTCTTCTTCTGATCCTTTCCTCTCCTCTTCAGAAAATGGGGTCACCA 486
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 406 GTGTGGTTTCTTCTTCTTCTTCTGATCCTTTCCTCTCCTCATCAGAAAATGGGGTCACCA 465
Query 487 CCACAAACACATCCACTCAGAAGAGGAAAAGAAGACCTGCAGGTACCCCAGATCCAGATG 546
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 466 CCACAAACACATCCACTCAGAAGAGGAAAAGAAGACCTGCAGGTACACCAGATCCAGATG 525
Query 547 CAGAAGTTGTGTCTTTATCACCAAGAACTCTTCTTGAATCAGACAGATACATATGTGAGA 606
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 526 CAGAAGTTGTGTCTTTATCACCAAGAACTCTTCTTGAATCAGACAGATACATATGTGAAA 585
Query 607 TCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTCCAGATGCATAGAAGACGTCACAAAG 666
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 586 TCTGTAACCAAGGGTTTCAAAGAGACCAAAATCTCCAGATGCATCGAAGACGTCACAAAG 645
Query 667 TTCCATGGAAGCTTCTTAAAAGAGACAACAACATAGAGGTGAAGAAACGAGTCTATGTTT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TTCCATGGAAGCTTCTTAAAAGAGACAACAACATAGAGGTGAAGAAACGAGTCTATGTTT 705
Query 727 GCCCTGAACCCACTTGCCTTCACCATAATCCTTGTCATGCTCTGGGAGATCTTGTCGGCA 786
|||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 706 GCCCTGAACCCACTTGTCTTCACCATGATCCTTGTCATGCTCTCGGAGATCTTGTCGGTA 765
Query 787 TCAAAAAACATTTCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TCAAAAAACATTTCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCT 825
Query 847 CTAAAGGTTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CTAAAGGTTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAG 885
Query 907 GACATTCTTGTGACTGTGGTTTCTTTTCTTCTTTTAGGGTGGAGAGTTTTATTGAACATC 966
|||||||||||||||||||| | | |||||| |||||||||||||||||||||||||
Sbjct 886 GACATTCTTGTGACTGTGGT--CGTGTCTTCTCC-AGGGTGGAGAGTTTTATTGAACATC 942
Query 967 AAGATAATTGTTCCGCACGGAGAGTTCACCGTGAACCGCCTCGACCACCACAAACCGCGG 1026
||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 943 AAGATAACTGTTCCGTACGGAGAGTTCACCGTGAACCGCCTCAACCGCCACAAACCGCGG 1002
Query 1027 TAACAGTCCCGGCATGCTCTTCTAGAACCGCCTCAACCGTCAGCACTCCGTCTAGTGAAA 1086
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TAGCAGTCCCGGCATGCTCCTCTAGAACCGCCTCAACCGTCAGCACTCCGTCTAGTGAAA 1062
Query 1087 CCAATTACGGCGGTACAGTTGCGGTTACGACTCCTCAACCTCTAGAAGGCCGTCCAATTC 1146
||||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1063 CCAATTACGGCTGTGCAGTTGCGGTTGCGACTCCTCTACCTCTAGAAGGCCGTCCAATTC 1122
Query 1147 ATCAGAGAATCTCATCTTCAATTCTCACCAACTCATCAAACAATCTCAACCTCGAACTCC 1206
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1123 ATCAGAGAATCTCATCTTCAATTCTCACCAACTCATCAAACAATCTCAACCTAGAACTCC 1182
Query 1207 AACTTCTTCCATTATCGTCGAATCAAAACCCTAATCAAGAAAACCAACAACAAAAAGTTA 1266
| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AGCTTCTTCCACTATCATCCAATCAAAACCCTAATCAAGAAAACCAACAACAAAAAGTTA 1242
Query 1267 AAGAACCATCTCATCATCATAATCATAATCATGATACCACAAACTTAAACCTCTCCATTG 1326
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1243 AAGAACCATCTCATCATCATAATCAGAATCATGATACCACAAACTTAAACCTTTCCATTG 1302
Query 1327 CACCATCATCATCATATCAACATTACAACAACTTTGATCGTATAAAAGAGATTATGGCGA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 CACCATCATCATCATATCAACATTACAACAACTTTGATCGTATAAAAGAGATTATGGCGA 1362
Query 1387 GCGAGCAAATTATGAAGATAGCGATGAAGGAGAAAGCTTACGCTGAGGAAGCTAAAAGAG 1446
|||||||||| ||| |||| ||||||||||||||| |||| || ||||||||||||||||
Sbjct 1363 GCGAGCAAATCATGCAGATGGCGATGAAGGAGAAATCTTATGCAGAGGAAGCTAAAAGAG 1422
Query 1447 AAGCCAAGAGGCAACGAGAGATAGCGGAAAACGAGTTTGCAAATGCCAAAAAGATTAGGC 1506
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1423 AAGCGAAGAGGCAACGAGAGATAGCGGAAAACGAGTTTGCAAATGCTAAAAAGATAAGGC 1482
Query 1507 AAAAAGCACAAGCTGAACTCGAGAGAGCTAAGTTTTTAAAGGAACAATCTATGAAGAAGA 1566
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1483 AAAAAGCACAAGCTGAACTCGAGAGAGCTAAGTTTTTAAAGGAACAATCGATGAAGAAGA 1542
Query 1567 TAAGTTCAACGATCATGCAGGTCACTTGTCAAACATGTAAAGGACAGTTTCAAGCAGTTG 1626
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1543 TAAGCTCAACGATCATGCAAGTCACTTGTCAAACTTGTAAAGGACAGTTTCAAGCAGTTG 1602
Query 1627 CGGTTCCGGCGGCTACGGCTGATGAGACGTCTCTTGTCGTGAGTTACATGTCGTCAGCGA 1686
|||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1603 CGGTTCCGGCGGCTGCGGCTGACGAAACGTCTCTTGTCGTGAGTTACATGTCGTCAGCGA 1662
Query 1687 ATACTGACGGAGAGTTGGAAAATGGTTTTTAAGTAAAACCGAAGAAAA-CATAAGATATT 1745
|||| |||||||||||||||||||| ||||||||||||| || |||| |||||||||||
Sbjct 1663 ATACCGACGGAGAGTTGGAAAATGGATTTTAAGTAAAACAAAAAAAAAGCATAAGATATT 1722
Query 1746 TAAATTGAGGTTAACTTTATTATACTTTTGTGTATTAATTACC-G---G--TTGTGTTAA 1799
|||||| |||| ||||| | |||| |||||||||||| ||||| | | |||||||||
Sbjct 1723 TAAATTAAGGT-AACTTAAATATATTTTTGTGTATTACTTACCCGATCGGGTTGTGTTAA 1781
Query 1800 TTTTTTCAACTACCATATATTATGTAATGGTTGTTATATAGTTGTT--TCTTTGGTCCAA 1857
|||||| || ||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1782 TTTTTTGAATTACCATATATTATGTCATGGTTGTCATATAGTTGTTAATCTTTGGTCCAA 1841
Query 1858 CAATATTA 1865
|| |||||
Sbjct 1842 CAGTATTA 1849
> Ahg475906 jgi|Araly1|475906|fgenesh2_kg.2__1036__AT1G68130.1
Length=1709
Score = 361 bits (195), Expect = 1e-98
Identities = 387/479 (81%), Gaps = 15/479 (3%)
Strand=Plus/Plus
Query 504 CAGAAGAGGAAAAGAAGACCTGCAGGTACCCCAGATCCAGATGCAGAAGTTGTGTCTTTA 563
|||||| | ||| | ||||| || || || || ||||| || || || || || ||||||
Sbjct 351 CAGAAGCGCAAACGGAGACCCGCCGGGACACCGGATCCGGAGGCGGAGGTAGTATCTTTA 410
Query 564 TCACCAAGAACTCTT-CTTGAATCAGA-CAGATACATATGTGAGATCTGTAACCAAGGGT 621
|| |||||||| || || ||||| || | | ||| ||||||||||||||||||||||||
Sbjct 411 TCTCCAAGAAC-GTTACTAGAATCGGATC-GGTACGTATGTGAGATCTGTAACCAAGGGT 468
Query 622 TTCAAAGAGACCAGAATCTCCAGATGCATAGAAGACGTCACAAAGTTCCATGGAAGCTTC 681
||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 469 TTCAAAGGGACCAGAATCTACAGATGCATAGAAGACGACATAAAGTTCCATGGAAGCTTC 528
Query 682 TTAAAAGAGACAACAACATA-GAGGTGAAGAAA-CGAGTCTATGTTTGCCCTGAACCCAC 739
| |||||||| | |||| | || || |||||| ||||||| || || || || || ||
Sbjct 529 TAAAAAGAGAGACCAAC-GAGGAAGT-AAGAAAGAGAGTCTACGTCTGTCCGGAGCCGAC 586
Query 740 TTGCCTTCACCATAATCCTTGTCATGCTCTGGGAGATCTTGTCGGCATCAAAAAACA-TT 798
|| |||||||| || |||||||| || || |||||||| || || ||||| ||||| ||
Sbjct 587 ATGTCTTCACCACAACCCTTGTCACGCGCTCGGAGATCTCGTGGGAATCAAGAAACACTT 646
Query 799 TCAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAGATGCTCTAAAGGTTATG 858
|| || | |||||||||||||||||||||||| | || ||| ||||||| ||||| || |
Sbjct 647 TC-GACGGAAACATAGTAACCATAAGCAATGGATCTGCGAGCGATGCTCAAAAGGCTACG 705
Query 859 CTGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGTACTAGAGGACATTCTTGTG 918
| |||||||||||||||||||||||||||||||| ||||| ||| | || || || ||||
Sbjct 706 CCGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGCACTCGCGGCCACTCCTGTG 765
Query 919 ACTGTGGTTTC-TTTTCTTCTTTTAGGGTGGAGAGTTTTATTGAACATCAAGATAATTG 976
|||| || |||| ||| || ||||||||||| || || || ||||| |||||
Sbjct 766 ACTGCGGCCGAGTTTT-TTCC---AGAGTGGAGAGTTTCATAGAGCACCAAGACAATTG 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70543133740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5