BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01950.1
Length=3641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484119 jgi|Araly1|484119|fgenesh2_kg.5__111__AT2G01950.1 5182 0.0
> Ahg484119 jgi|Araly1|484119|fgenesh2_kg.5__111__AT2G01950.1
Length=3226
Score = 5182 bits (2806), Expect = 0.0
Identities = 3091/3231 (96%), Gaps = 10/3231 (0%)
Strand=Plus/Plus
Query 41 ATGACTACTTCACCAATCCGGGTTCGGATCCGGACTCGGATCCAAATCTCCTTCATCTTC 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTACTTCACCAATCCGGGTTCGGATCCGGACTCGGATCCAAATCTCCTTCATCTTC 60
Query 101 CTCCTTACCCATCTCTCACAATCTTCCTCCTCCGACCAATCTTCACTCAAAACCGACTCA 160
||||| |||||| |||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CTCCTCACCCATTTCTCTCTATCTTCTTCCTCCGACCAATCTTCACTCAAAACCGACTCA 120
Query 161 TTATCACTCCTCTCTTTCAAAACAATGATCCAAGATGATCCAAACAACATTCTCTCAAAC 220
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 121 TTATCACTCCTCTCTTTCAAATCAATGATCCAAGACGATCCAAACAACATTCTCTCTAAT 180
Query 221 TGGTCACCTCGTAAATCCCCTTGTCAATTCTCCGGCGTCACTTGTCTCGGAGGAAGAGTC 280
||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGGACACCTCGTAAATCGCCTTGTCAATTCTCCGGCGTCACTTGTCTCGGTGGAAGAGTC 240
Query 281 ACCGAGATTAATCTCTCCGGTAGTGGCCTCTCCGGAATCGTCTCCTTCAATGCTTTCACc 340
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 ACCGAGATTAATCTCTCCGGTAGTGGCCTCTCCGGAATAGTCTCCTTCAATGCTTTTACC 300
Query 341 tctcttgattctctctctgttctcaaactctcagagaacttcttcgtcttaaactcaacc 400
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 301 TCTCTTGATTCTCTCTCTGTTCTCAAACTCTCAGAGAACTTTTTCGTTTTAAACTCAACC 360
Query 401 tctcttcttcttcttccttTAACCCTAACTCAT-CTCGAACTCTCTTCCTCCGGTTTAAT 459
||||||||||||||||| |||| |||||| | | ||||||||||||||||||||||||||
Sbjct 361 TCTCTTCTTCTTCTTCCCTTAAGCCTAAC-CCTCCTCGAACTCTCTTCCTCCGGTTTAAT 419
Query 460 CGGAACCCTCCCTGAAAATTTCTTCTCCAAATACTCAAATCTTATTTCCATCACCCTCTC 519
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CGGAATCCTCCCTGAAAATTTCTTCTCCAAATACTCAAATCTTATTTCCATCACTCTCTC 479
Query 520 TTACAATAACTTCACCGGAAAGTTACCTAATGATCTTTTCTTAAGCAGCAAGAAACTCCA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTACAATAACTTCACCGGAAAGTTACCTAATGATCTTTTCTTAAGCAGCAAGAAACTCCA 539
Query 580 AACCCTTGATCTTTCTTACAACAACATTACCGGTCCAATCTCCGGTTTAACCATTCCTCT 639
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 540 AACCCTTGATCTTTCTTACAACAACATAACCGGTTCAATCTCCGGTTTAACCATTCCTCT 599
Query 640 TTCTTCTTGCGTCTCCATGA-CCTATCTCGATTTCTCCGGTAACAGTATCTCCGGCTATA 698
||||||||||||| | | | | | ||| |||||||||||||||||||||||||| ||||
Sbjct 600 CTCTTCTTGCGTCT-CTTTATCGTTTCTTGATTTCTCCGGTAACAGTATCTCCGGTTATA 658
Query 699 TCTCTGACTCACTCATCAACTGCACCAACCTCAAAAGCTTGAATCTTTCTTACAACAACT 758
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCCTGACTCACTCATCAACTGCACCAACCTCAAAAGCTTGAATCTTTCTTACAACAACT 718
Query 759 TCGATGGGCAGATTCCAAAATCTTTCGGTGAGCTTAAACTCTTACAAAGTTTGGATCTTT 818
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TCGATGGGCAGATTCCAAAATCTTTCGGTGAGCTAAAACTCTTACAAAGTTTGGATCTTT 778
Query 819 CTCATAACCGACTCACCGGTTGGATCCCGCCGGAGATCGGAGATACTTGCCGGTCATTAC 878
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 CGCATAACCGACTCACCGGTTGGATCCCACCGGAGATCGGAGATACTTGCCGGTCATTAC 838
Query 879 AAAACCTCCGGCTTTCTTACAACAACTTCACTGGTGTGATCCCTGAGTCGTTGTCCTCAT 938
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 AAAACCTCCGGCTTTCTTACAACAACTTCAGTGGTGTGATCCCTGAGTCGTTGTCCTCAT 898
Query 939 GTTCTTGGCTACAAAGTCTTGACCTTTCAAACAACAACATCTCCGGTCCGTTTCCGAACA 998
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 GTTCTTGGCTACAAAGTCTTGACCTTTCCAACAACAACATCTCCGGTCCGTTTCCGAACA 958
Query 999 CTATCCTCCGGAGTTTTGGATCTCTTCAAATCTTACTTCTCAGCAACAACTTAATCTCCG 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTATCCTCCGGAGTTTTGGATCTCTTCAAATCTTACTTCTCAGCAACAACTTAATCTCCG 1018
Query 1059 GTGACTTTCCGACTTCAATCTCTGCTTGTAAGAGCTTGAGAATCGCTGACTTCAGCTCGA 1118
|||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1019 GTGAGTTTCCGACTTCAATCTCTGCTTGCAAGAGTTTGAGAATCGCTGATTTCAGCTCGA 1078
Query 1119 ATCGATTCTCCGGTGTGATTCCACCGGATTTATGTCCCGGAGCAGCTTCATTAGAAGAGC 1178
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1079 ATCGATTCTCCGGCGTGATTCCACCGGATTTATGTCCCGGAGCAGCTTCACTAGAAGAGC 1138
Query 1179 TAAGACTCCCGGATAATCTCGTCACCGGAGAGATTCCACCGGCGATATCTCAATGCTCTG 1238
||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1139 TAAGAATCCCGGATAATCTCGTCACCGGAGAGATTCCTCCGGCGATATCTCAGTGCTCAG 1198
Query 1239 AGCTACGAACGATTGATCTCAGTCTCAATTATCTCAACGGTACAATCCCACCGGAGATCG 1298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGCTTCGAACGATTGATCTCAGTCTCAATTATCTCAACGGTACAATCCCACCGGAGATCG 1258
Query 1299 GAAACCTCCAGAAACTCGAGCAATTCATAGCTTGGTACAACAACATCGCCGGAGAAATCC 1358
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct 1259 GAAACCTCCAGAAACTCGAGCAATTCATCGCTTGGTACAACAACCTCGCCGGAAAAATCC 1318
Query 1359 CACCGGAGATCGGAAAACTACAAAACCTAAAAGATTTGATCCTCAACAACAATCAACTCA 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CACCGGAGATCGGAAAACTACAAAACCTAAAAGATTTGATCCTCAACAACAATCAACTCA 1378
Query 1419 CCGGAGAAATCCCACCGGAATTTTTCAATTGCAGTAACATCGAATGGGTCTCATTCACAA 1478
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1379 CCGGAGAAATCCCACCGGAGTTTTTCAATTGCAGTAACATCGAATGGATCTCATTCACAA 1438
Query 1479 GCAACAGATTAACCGGAGAAGTGCCTAAAGATTTCGGAATCCTTTCCCGGTTAGCCGTTC 1538
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 1439 GCAACAGATTAACCGGAGAAGTACCTAAAGATTTTGGAATCCTTTCCCGGTTAGCTGTTC 1498
Query 1539 TTCAGCTCGGTAACAACAATTTCACCGGAGAAATCCCACCGGAGCTAGGAAAATGCACAA 1598
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTCAGCCCGGAAACAACAATTTCACCGGAGAAATCCCACCGGAGCTAGGAAAATGCACAA 1558
Query 1599 CTCTGGTTTGGCTTGATCTTAACACAAACCACTTAACCGGTGAAATCCCTCCCCGGTTAG 1658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1559 CTCTGGTTTGGCTTGATCTTAACACAAACCACTTAACCGGTGAAATCCCACCCCGGTTAG 1618
Query 1659 GTCGTCAACCCGGTTCAAAAGCACTTTCCGGTTTACTCTCAGGAAACACAATGGCTTTTG 1718
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1619 GTCGTCAACCCGGTTCAAAAGCTCTTTCCGGTTTACTCTCAGGCAACACAATGGCTTTTG 1678
Query 1719 TTAGAAACGTTGGAAACTCATGTAAAGGTGTTGGAGGTTTGGTTGAGTTCTCAGGGATCA 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TTAGAAACGTTGGAAACTCATGTAAAGGTGTTGGAGGTTTGGTTGAGTTCTCAGGGATCA 1738
Query 1779 GACCAGAGAGGCTTCTTCAGATTCCATCTCTTAAAAGCTGTGACTTCACAAGAATGTATT 1838
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1739 GACCAGAGAGGCTTCTTCAGATTCCTTCTCTTAAGAGCTGTGACTTCACAAGAATGTATT 1798
Query 1839 CAGGTCCAATTTTGAGTCTATTCACAAGATATCAAACCATTGAGTATCTTGATCTTTCTT 1898
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 CAGGTCCAATTCTGAGTCTTTTCACAAGATATCAAACCATTGAGTATCTTGATCTTTCTT 1858
Query 1899 ATAATCAGCTTAGAGGTAAAATCCCTGATGAGATTGGAGAAATGATTGCTCTTCAAGTTC 1958
||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1859 ATAATCAGCTTCGAGGTACAATCCCAGATGAGATTGGAGAAATGATTGCTCTTCAAGTTC 1918
Query 1959 TTGAGCTTTCTCATAATCAACTCTCCGGCGAGATTCCGTTTACGATTGGTCAGCTCAAGA 2018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1919 TTGAGCTTTCTCATAATCAACTCTCCGGCGAGATTCCTTTTACGATTGGTCAGCTCAAGA 1978
Query 2019 ATCTCGGTGTTTTCGATGCTTCGGATAATCGGTTGCAGGGTCAAATCCCTGAATCTTTCT 2078
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1979 ATCTCGGTGTGTTCGATGCTTCGGATAATCGGTTACAGGGTCAAATCCCTGAATCTTTCT 2038
Query 2079 CGAATTTGTCTTTCTTGGTGCAGATTGATTTGTCGAATAACGAGTTAACTGGTCCGATTC 2138
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2039 CGAATTTGTCTTTCTTGGTGCAGATTGATTTGTCGAATAACGAGTTGACCGGTCCGATTC 2098
Query 2139 CTCAGAGAGGTCAG-TTAAGCACGCTTCCGGCGACTCAGTACGCGAATAATCCGGGGCTT 2197
|||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 2099 CTCAGAGAGGTCAGCTTA-GCACGCTTCCAGCGACACAGTATGCGAATAATCCGGGACTT 2157
Query 2198 TGCGGTGTTCCTTTACCGGAATGTAAGAATGGAAACAATCAGCTTCCTGCTGGAACAGAG 2257
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 2158 TGCGGTGTTCCTTTACCGGAGTGTAAGAATGGAAACAATCAGCTTCCTGCTGGACCGGAG 2217
Query 2258 GAAGGGAAACGTGCTAAGCACGGAACTAGGGCAGCTTCTTGGGCGAATAGCATTGTTTTG 2317
||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 2218 GAAAGGAAACGTGCTAAGCACGGAACTACGGCTGCTTCTTGGGCGAATAGTATTGTTTTG 2277
Query 2318 GGAGTGTTGATTTCCGCTGCTTCGGTTTGTATTTTAATCGTTTGGGCGATTGCGGTTCGT 2377
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2278 GGAGTGTTGATTTCCGCTGCTTCGGTTTGTATTTTGATCGTTTGGGCGATTGCGGTTCGT 2337
Query 2378 GCGAGGAGGAGAGATGCGGATGATGCGAAGATGCTTCACAGTTTGCAGGCGGTTAATTCC 2437
||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2338 GCGAGGAAGAGAGACGCGGAAGATGCAAAGATGCTTCACAGTTTGCAGGCGGTTAATTCC 2397
Query 2438 GCCACTACATGGAAGATAGAGAAGGAGAAAGAGCCGTTGAGTATTAATGTAGCGACGTTT 2497
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 GCCACGACATGGAAGATTGAGAAGGAGAAAGAGCCGTTGAGTATTAATGTAGCGACGTTT 2457
Query 2498 CAGCGACAGTTGAGAAAGCTTAAGTTTTCGCAGCTTATCGAGGCGACAAACGGATTCTCA 2557
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2458 CAGCGACAGTTGAGGAAGCTTAAGTTTTCGCAGCTTATCGAGGCTACAAATGGATTCTCG 2517
Query 2558 GCCGCGAGTATGATCGGACACGGCGGATTCGGTGAGGTTTTTAAGGCGACGCTTAAAGAC 2617
|||||||||||||| ||||| || |||||||| ||||| || || ||||||||||||||
Sbjct 2518 GCCGCGAGTATGATTGGACATGGTGGATTCGGCGAGGTATTCAAAGCGACGCTTAAAGAT 2577
Query 2618 GGGTCTTCCGTGGCGATCAAGAAGCTCATTAGACTTAGTTGTCAAGGAGATCGAGAGTTC 2677
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2578 GGTTCTTCCGTGGCAATCAAGAAGCTCATTAGACTTAGTTGTCAAGGAGATCGAGAGTTT 2637
Query 2678 ATGGCAGAAATGGAAACCTTAGGGAAGATCAAACACCGAAACCTCGTACCGCTCTTGGGA 2737
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2638 ATGGCGGAAATGGAAACCTTAGGGAAGATTAAACACCGAAACCTTGTACCGCTCTTGGGA 2697
Query 2738 TACTGTAAAATCGGGGAAGAGAGATTGCTTGTTTACGAGTTTATGCAATACGGAAGCCTC 2797
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2698 TACTGTAAAATTGGTGAAGAGAGATTGCTCGTTTACGAGTTTATGCAATACGGAAGCCTC 2757
Query 2798 GAGGAGGTGCTTCACGGACCAAGAACAGGCGAAAAACGGAGGATTTT-AGGTTGGGAAGA 2856
|||||||||||||| ||||| ||||||||||||||||| ||||| || | | |||||||
Sbjct 2758 GAGGAGGTGCTTCATGGACCGAGAACAGGCGAAAAACGAAGGATCTTGAACT-GGGAAGA 2816
Query 2857 GA-GGAAAAAGATTGCAAAAGGAGCAGCAAAAGGACTTTGTTTCTTGCATCACAATTGTA 2915
| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2817 -ACGGAAAAAGATTGCGAAAGGAGCAGCAAAAGGGCTTTGCTTCTTGCATCACAATTGTA 2875
Query 2916 TCCCTCACATAATCCACCGCGACATGAAATCGAGCAACGTGCTTCTCGATCAAGACATGG 2975
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2876 TCCCTCACATAATCCACCGCGATATGAAATCGAGCAACGTGCTTCTCGATCAAGACATGG 2935
Query 2976 AAGCAAGAGTTTCAGATTTCGGAATGGCGAGACTGATCAGCGCATTAGACACACATTTGA 3035
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2936 AAGCAAGAGTTTCAGATTTCGGAATGGCGAGACTGATCAGCGCGTTAGACACACATTTGA 2995
Query 3036 GTGTAAGTACCTTGGCAGGCACGCCAGGTTACGTACCACCAGAGTATTACCAAAGTTTCA 3095
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2996 GTGTAAGTACCTTGGCAGGCACGCCAGGTTACGTACCACCAGAGTATTACCAGAGTTTCA 3055
Query 3096 GATGTACCGCAAAAGGCGACGTGTACTCAATCGGAGTAGTGATGCTCGAGATCTTAAGCG 3155
|||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 3056 GATGTACCGCGAAAGGCGACGTGTACTCAGTCGGAGTAGTGATGCTCGAGATTTTAAGCA 3115
Query 3156 GGAAAAGACCAACGGATAAAGAAGAGTTTGGTGATACGAATTTAGTAGGTTGGTCGAAGA 3215
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 3116 GGAAAAGACCAACGGATAAAGAAGAGTTTGGTGAAACGAATTTAGTTGGTTGGTCGAAGA 3175
Query 3216 TGAAGGCAAGAGAAGGGAAACACATGGAAGTGATTGATGAAGACCTTCTAA 3266
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3176 TGAAGGCAAGAGAAGGGAAACATATGGAAGTGATTGATGAAGACCTTCTAA 3226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137540068822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5