BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01960.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896141 jgi|Araly1|896141|Al_scaffold_0005_107 1064 0.0
> Ahg896141 jgi|Araly1|896141|Al_scaffold_0005_107
Length=777
Score = 1064 bits (576), Expect = 0.0
Identities = 714/779 (92%), Gaps = 16/779 (2%)
Strand=Plus/Plus
Query 24 CAAAGCCATAAGCCATGGAATCTAGTCGCCGGAATCTTCTTTCCGATCATCACTTTC-TT 82
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 10 CAAAGCCAAAAGTCATGGAATCTAGTCGCCGGAATCTTCTTTCCGATCATCACTTTCATT 69
Query 83 CCTCTCGGCTCCTCTTGTCGGCCACGCCTTGTATCTCTTCTGCATGCGTAACGACCACGT 142
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 -CTCTCAGCTCCTCTCGTCGGCCACGCCTTGTATCTCTTCTGCATGCGTAACGACCACGT 128
Query 143 TTACTACCG-CG-A-CTTCCAAAGTACGTTACCACGTGTACAAACACTCGTCAGCGTCTC 199
|| |||||| | | ||||||||||| | | |||||||||| |||||||||||||||||
Sbjct 129 TTTCTACCGAAGCAGCTTCCAAAGTATG-T--CACGTGTACAGACACTCGTCAGCGTCTC 185
Query 200 TCTCCTCGCCTTGTTCCTCCTTAGCAACATCGGTATGTTTCTCCGACCACGACGGCTCAG 259
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 186 TCTCCTCGCCTTGTTCCTCCTTAGCAACATCGCTATGTTTCTCCGACCACGACGGCTTAG 245
Query 260 CTACTTCCTAGTTATTGTCTTCTTCATAGGTTTTGCTTACTCCGGTGTGTACAAGATGGA 319
|||||| |||||||||||||||||| | || ||||||||| |||||||||||||||||||
Sbjct 246 CTACTTTCTAGTTATTGTCTTCTTCGTCGGCTTTGCTTACGCCGGTGTGTACAAGATGGA 305
Query 320 AAGCCGGCGGTTTTCTCCGACACCAATGTGTTTCAAGGGAGAATATAATAATGGACAAGG 379
||||||||||||| ||||||| ||||| || |||||||||||||||| ||||||||| |
Sbjct 306 AAGCCGGCGGTTTCCTCCGACTCCAATATGGTTCAAGGGAGAATATAGGAATGGACAACG 365
Query 380 -AGAACGTAAAACAGAACAATATCAAGTGGTTAAGATAGAACAAAGTCAAGGACGCTTGC 438
|| || ||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 366 TAG---GT----CAGAAGAATATCAAGTGGTTAAGATTGAACAAAGTCAAGGACGCTTGC 418
Query 439 AAAGAGTTCACTTGCGGTTTGTCAACAGCTATGCCTTGCCACCGTATGATAGAAGATTGT 498
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 419 AAAGAGTTCACTTGCGGTTTGTCGACAGCTATGACTTGCCACCGTATGATAGAAGATTGT 478
Query 499 TACCATCTGTTAAGACTGGATGCTGCAATCGGCCAGGGAATTGCAAACTAGAGACGGTCA 558
||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 479 TACCATCCGTTAAGACTGGATGCTGCAGTCGGCCAGGGAGTTGCAAGCTAGAGACGGTCA 538
Query 559 ATGCAACATTGTGGGTTACAAGAAATCGTGAAGGACCACCTTTGGAAACGGCAATGATCT 618
| ||| ||||||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 539 ACGCATCATTGTGGGTTACAAGAAATCGTCAAAGACCACCGTTAGAAACGGCAATGATCT 598
Query 619 ATGATCGTTACGGTGGCAATGCAGACATAAAGGATTATTACGATATGTGGAGACACGAGT 678
| | ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 599 ACGGTCGTTACAGTGGCAATGCAGACATAAGGGATTATTACGACATGTGGAGACACGAGT 658
Query 679 TAAGTGTGTTGTACTATGATTGTATGACTTGTCAGGTTAGGATCATTAAGTCTCCAAGGC 738
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 659 TGAGTGTGTTGTACTATGATTGCATGACTTGTCAGGTCAGGATCATTAAGTCTCCACGGC 718
Query 739 TGCGCAAATGGTGGCAGTTCGGTGTTTTCTTATCTTCCCTCACCTCTTTGTTTAGATAG 797
|||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||
Sbjct 719 TGCGCAAATGGTGGCACTTCGGTGTTTTCTTGTCATCCCTCACTTCTTTGTTTAGATAG 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5