BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01970.1
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935928 jgi|Araly1|935928|scaffold_500119.1 2964 0.0
Ahg911263 jgi|Araly1|911263|Al_scaffold_0001_1517 1430 0.0
Ahg947354 jgi|Araly1|947354|scaffold_703583.1 933 0.0
Ahg913258 jgi|Araly1|913258|Al_scaffold_0001_3512 327 2e-88
> Ahg935928 jgi|Araly1|935928|scaffold_500119.1
Length=1822
Score = 2964 bits (1605), Expect = 0.0
Identities = 1749/1820 (96%), Gaps = 3/1820 (0%)
Strand=Plus/Plus
Query 47 TCACATTAACACACATCATCATGAGATTACCAACGACGCTGCTCCTCTTTATCGGAGCTC 106
||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 TCACA-TAA-ACACACCATCATGAGATTACCAACGTCGCTGCTCCTCTTTATCGGAGCTC 60
Query 107 TCATCTTCTCCGGCGCCGGTACTGTCAGATCCGATGCCTCCGACCACCGTTACAAGGACG 166
||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 61 TCATCTTCTCCGGCGCCGGAAATGTCAGATCCGATGCCTCAGACCACCGTTACAAGGACG 120
Query 167 GTGACTCCGTTCCTCTCTACGCCAACAAGGTCGGCCCCTTTCACAATCCCAGTGAGACGT 226
| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 121 GCGACTCCGTTCCTCTCTACGCCAACAAAGTCGGTCCGTTTCACAATCCCAGTGAGACGT 180
Query 227 ATCGCTATTTCGATCTCCCCTTTTGTATTCCAGAGGGTGTGAAAGATAAGAAGGAAGCTC 286
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGCTATTTCGATCTCCCATTTTGTATTCCAGAGGGTGTGAAAGATAAGAAGGAAGCTC 240
Query 287 TTGGTGAGGTTTTGAATGGGGATAGGCTTGTTAGTGCTCCATACAAGCTTAACTTTAGAG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGGTGAGGTTTTGAATGGGGATAGGCTTGTTAGTGCTCCATACAAGCTTAACTTTAGAG 300
Query 347 ATGAGAAAGACTCAGAGGTGTACTGTAAAAAGAAGCTTAGTAGAGAAGAAGTTGAACACT 406
| |||||||||||||| || ||||| |||||||||||| ||||||||||| ||||| |
Sbjct 301 AGGAGAAAGACTCAGATGTTTACTGCCGAAAGAAGCTTAGCAGAGAAGAAGTCGAACAGT 360
Query 407 TTCGAAGAGCTGTTGAAAAAGATTATTACTTTCAGATGTATTATGATGATTTGCCTATTT 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TTCGAAGAGCTGTTGAAAAAGATTATTACTTTCAGATGTATTATGATGATTTGCCTATCT 420
Query 467 GGGGATTCATTGGGAAGGTGGACAAAGAGAGCAAATCTGATCCTAGCGAGTTTAAATATT 526
||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 421 GGGGATTCATTGGAAAGGTTGACAAAGAGAGCAAATCTGATCCGAGCGAGTTCAAATATT 480
Query 527 TTCTCTACAAACACATCCAGTTTGAGATTTTGTACAATAAGGATCGGGTGATTGAAATCA 586
| |||||||| |||||||| |||||||||||||| || |||||| | |||||||||||||
Sbjct 481 TCCTCTACAAGCACATCCAATTTGAGATTTTGTATAACAAGGATAGAGTGATTGAAATCA 540
Query 587 ATGCTAGAATGGATCCTCATTCGCTTGTGGATCTTACTGAGGATAAGGAAGTCGATGCTG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGCTAGAATGGATCCTCATTCGCTTGTGGATCTTACTGAGGATAAGGAAGTCGATGCTG 600
Query 647 AGTTTATGTACACTGTGAAGTGGAAGGAAACTGAGACTTCTTTTGAGAAAAGAATGGATA 706
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct 601 AGTTTATGTACACTGTGAAATGGAAGGAAACTGAGACTCCTTTTGAGAAAAGAATGGACA 660
Query 707 AGTATGCTATGTCTTCTTCTCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGTATGCTATGTCTTCTTCTCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTA 720
Query 767 ACTCCTGCGTCACTGTCCTTCTTTTGACTGGTTTCCTTGCAACCATCCTGATGCGGGTCC 826
|||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 721 ACTCCTGCGTTACTGTCCTCCTTTTGACTGGTTTCCTTGCAACCATCTTGATGCGGGTTC 780
Query 827 TCAAGAATGATTTCATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAAA 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCAAGAATGATTTCATGAAGTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAAA 840
Query 887 CCGGATGGAAATACATTCATGGAGATGTCTTCCGGTTCCCAAAGAACAAATCTCTCTTTG 946
| ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 841 CTGGATGGAAATACATTCACGGAGATGTCTTCCGTTTCCCAAAGCACAAATCTCTCTTTG 900
Query 947 CTGCATCTCTTGGTAGCGGTACCCAGTTGTTCACTCTGACCATCTTCATTTTCATGCTTT 1006
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTGCATCTCTCGGCAGCGGTACCCAGTTGTTCACTCTGACCATCTTCATTTTCATGCTTT 960
Query 1007 CACTTGTTGGAGTGTTCTATCCATACAACCGTGGAGCACTCTTCACTGCTTTGGTCGTTA 1066
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 961 CACTTGTTGGAGTGTTCTATCCATACAACCGTGGAGCACTCTTCACCGCTTTGGTCGTGA 1020
Query 1067 TCTATGCTCTCACATCTGGAATTGCCGGATACACTGCCTCCTCTTTCTACTGTCAACTCG 1126
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTACGCTCTCACATCTGGAATTGCCGGATACACTGCCTCCTCTTTCTACTGTCAACTCG 1080
Query 1127 AAGGAAAGAATTGGGTGAGAAATTTGCTGCTAACTGGAGGTCTCTTCTGTGGCCCACTAT 1186
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1081 AAGGAAAGAATTGGGTGAGAAATTTGCTGCTTACGGGAGGTCTCTTCTGTGGCCCACTAT 1140
Query 1187 TTCTCACCTTCTGCTTCCTAAACACCGTTGCAATCGCATACAGTGCAACTGCCGCTCTTC 1246
| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1141 TCCTCACCTTCTGTTTCCTAAACACAGTTGCAATTGCCTACAGTGCAACTGCCGCTCTTC 1200
Query 1247 CCTTTGGAACCATCATAGTGATCGTCCTCATATGGACACTAGTCACTTCGCCTTTACTTG 1306
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CCTTTGGAACCATTGTAGTGATCGTCCTCATATGGACACTAGTCACTTCGCCTTTACTTG 1260
Query 1307 TGTTGGGTGGTATTGCCGGTAAAAACAGCAAAGCTGAGTTCCAAGCTCCAGTCCGCACCA 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGTTGGGTGGTATTGCCGGTAAAAACAGCAAAGCTGAGTTCCAAGCTCCAGTCCGCACCA 1320
Query 1367 CTAAGTATCCTCGGGAGATCCCGCCACTCCCATGGTACAGGAGTGCTGTACCGCAGATGG 1426
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1321 CTAAGTATCCTCGGGAGATCCCGCCACTCCCATGGTACAGGAGTGCTATACCTCAGATGG 1380
Query 1427 CCATGGCTGGATTTCTTCCTTTCAGTGCCATCTACATCGAGCTATATTACATCTTTGCCA 1486
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CCATGGCCGGATTTCTTCCTTTCAGTGCCATCTACATCGAGCTATATTACATCTTTGCCA 1440
Query 1487 GTGTTTGGGGCCATCGTATCTATACCATTTACAGCATCCTCTTCATCGTCTTCATCATCC 1546
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1441 GTGTTTGGGGCCATCGTATCTACACCATTTACAGCATCCTCTTCATCGTCTTCATCATCC 1500
Query 1547 TGTTGATCGTCACTGCTTTTATAACAGTTGCCCTTACTTACTTCCAACTCGCTGCTGAAG 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TGTTGATCGTCACTGCTTTTATAACAGTTGCCCTTACTTACTTCCAACTCGCTGCTGAAG 1560
Query 1607 ATCATGAATGGTGGTGGAGATCATTCCTATGTGGTGGATCGACTGGTCTGTTTATATATG 1666
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1561 ATCATGAATGGTGGTGGAGATCATTCCTATGTGGTGGATCGACTGGTCTGTTCATCTACG 1620
Query 1667 CGTACTGCTTATACTACTACTACGCAAGATCAGACATGTCTGGTTTCATGCAAACATCCT 1726
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1621 CATACTGCTTATACTATTACTACGCAAGATCAGACATGTCCGGTTTCATGCAAACATCCT 1680
Query 1727 TCTTCTTCGGGTACATGGCTTGCATTTGTTACGGTTTCTTCCTCATGCTTGGAACCGTTG 1786
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1681 TCTTCTTCGGTTACATGGCTTGCATTTGTTACGGTTTCTTCCTCATGCTTGGAACTGTTG 1740
Query 1787 GCTTCCGCGCTGCTCTCCTCTTCGTCCGCCACATTTACCGGTCGATTAAATGCGAGTAAA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 GCTTCCGCGCTGCTCTCCTCTTCGTCCGCCACATTTACCGGTCGATTAAATGCGAGTAAA 1800
Query 1847 ACTGTTGCTGCCAATC-ACC 1865
|||||||||||||||| |||
Sbjct 1801 ACTGTTGCTGCCAATCCACC 1820
> Ahg911263 jgi|Araly1|911263|Al_scaffold_0001_1517
Length=1599
Score = 1430 bits (774), Expect = 0.0
Identities = 1133/1308 (87%), Gaps = 17/1308 (1%)
Strand=Plus/Plus
Query 547 TTTGAGATTTTGTACAATAAGGATCGGGTGATTGAAATCAATGCTAGAATGGATCCTCAT 606
||||||||| | ||||| ||||| || |||||||| |||| ||| || ||||||||||||
Sbjct 232 TTTGAGATTCTATACAACAAGGACCGTGTGATTGAGATCAGTGCCAGGATGGATCCTCAT 291
Query 607 TCGCTTGTGGATCTTACTGAGGATAAGGAAGTCGATGCTGAGTTTATGTACACTGTGAAG 666
|||||||||||||| |||||||| |||||||| ||||| ||||||||||||| |||||||
Sbjct 292 TCGCTTGTGGATCTCACTGAGGACAAGGAAGTTGATGCAGAGTTTATGTACAATGTGAAG 351
Query 667 TGGAAGGAAACTGAGACTTCTTTTGAGAAAAGAATGGATAAGTA-TGCTATGTCTTCTTC 725
||||||||||| ||||| ||||||||||||||||||| ||||| | |||||||||||||
Sbjct 352 TGGAAGGAAACCGAGACCCCTTTTGAGAAAAGAATGGAGAAGTACT-CTATGTCTTCTTC 410
Query 726 TCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTAACTCCTGCGTCACTGTCCT 785
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 411 TCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTAACTCATGTGTCACTGTCCT 470
Query 786 TCTTTTGACTGGTTTCCTTGCAACCATCCTGATGCGGGTCCTCAAGAATGATTTCATGAA 845
||||||| |||| ||||||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct 471 TCTTTTGGCTGGATTCCTTGCAACTATCTTAATGCGAGTCCTCAAGAATGATTTCATGAA 530
Query 846 GTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAAACCGGATGGAAATACATTCA 905
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 531 GTATGCTCAAGATGAGGAAGCTGCTGATGATCAAGAGGAAACTGGATGGAAGTACATCCA 590
Query 906 TGGAGATGTCTTCCGGTTCCCAAAGAACAAATCTCTCTTTGCTGCATCTCTTGGTAGCGG 965
||| ||||| || |||||||| | |||| ||| | ||||| ||||| || ||||| ||
Sbjct 591 TGGTGATGTGTTTCGGTTCCCTACTCACAATTCTTTATTTGCCGCATCCCTCGGTAGTGG 650
Query 966 TACCCAGTTGTTCACTCTGACCATCTTCATTTTCATGCTTTCACTTGTTGGAGTGTTCTA 1025
|| || |||||||| || ||||| || |||||||||||| | |||||||||||||||||
Sbjct 651 CACTCAATTGTTCACGCTCACCATATTTATTTTCATGCTTGCTCTTGTTGGAGTGTTCTA 710
Query 1026 TCCATACAACCGTGGAGCACTCTTCACTGCTTTGGTCGTTATCTATGCTCTCACATCTGG 1085
||||||||||| ||||||||||| || |||||||| || || || |||||||| |||||
Sbjct 711 CCCATACAACCGAGGAGCACTCTTTACCGCTTTGGTGGTCATTTACGCTCTCACTTCTGG 770
Query 1086 AATTGCCGGATACAC-TGCCTCCTCTTTCTACTGTCAACTCGAAGGAAAGAAT-TGGGTG 1143
||||||||||||||| | || ||||||||||||| ||||| |||||||| || ||||||
Sbjct 771 AATTGCCGGATACACAT-CCGCCTCTTTCTACTGCCAACTTGAAGGAAA-AAGCTGGGTG 828
Query 1144 AGAAATTTGCTGCTAACTGGAG-GTCTCTTCTGTGGCCCACTATTTCTCACCTTCTGCTT 1202
|| || ||| | || ||||| | || |||||||||||||| |||| || ||||| |||||
Sbjct 829 AGGAACTTGTTACTCACTGG-GTGTATCTTCTGTGGCCCATTATTCCTAACCTTTTGCTT 887
Query 1203 CCTAAACACCGTTGCAATCGCATACAGTGCAACTGCCGCTCTT-CCCTTTGGAACCATCA 1261
||| |||||||| || ||| | |||| ||||||||| || || ||||||||||||||
Sbjct 888 CCTTAACACCGTAGCCATCACCTACACTGCAACTGCTGCA-TTACCCTTTGGAACCATTG 946
Query 1262 TAGTGATCGTCCTCATATGGACACTAGTCACTTCGCCTTTACTTGTGTTGGGTGGTATTG 1321
| ||||||||||| |||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 947 TGGTGATCGTCCTTATATGGACTCTAGTCACATCGCCTTTACTCGTCTTGGGTGGTATTG 1006
Query 1322 CCGGTAAAAACAGCAAAGCTGAGTTCCAAGCTCCA-GTCCGCACCACTAAGTATCCTCGG 1380
| ||||||||||||||||| ||||||||||| ||| | ||| || || || ||||| ||
Sbjct 1007 CGGGTAAAAACAGCAAAGCAGAGTTCCAAGCACCATG-CCGTACAACCAAATATCCCCGT 1065
Query 1381 GAGATCCCGCCACTCCCATGGTACAGGAGTGCTGTACCGCAGATGGCCATGGCTGGATTT 1440
||||| || |||||||| |||||||| |||||| | || ||||||||||||||||| |||
Sbjct 1066 GAGATTCCACCACTCCCTTGGTACAGAAGTGCTATTCCTCAGATGGCCATGGCTGGTTTT 1125
Query 1441 CTTCCTTTCAGTGCCATCTACATCGAGCTATATTACATCTTT-GCCAGTGTTTGGGGCCA 1499
|||||||||||||||||||| |||||||| || ||||| ||| || ||||| ||||| ||
Sbjct 1126 CTTCCTTTCAGTGCCATCTATATCGAGCTTTACTACAT-TTTCGCTAGTGTCTGGGGTCA 1184
Query 1500 TCGTATCTATACCATTTACAGCATCCTCTTCATCGTCTTCATCATCCTGTTGATCGTCAC 1559
|| ||||| ||||| ||||||||||||||||| ||||||||||| || | || |||||
Sbjct 1185 CCGGATCTACACCATCTACAGCATCCTCTTCATTGTCTTCATCATTCTCATCATAGTCAC 1244
Query 1560 TGCTTTTATAACAGTTGCCCTT-ACTTACTTCCAACTCGCTGCTGAAGATCATGAATGGT 1618
|||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1245 TGCTTTTATAACCGTTGCC-TTGACTTACTTCCAACTCGCTGCTGAAGATCACCAATGGT 1303
Query 1619 GGTGGAGATCATTCCTATGTGGTGGATCGACTGGTCTGTTTATATATGCGTACTGCTTAT 1678
|||||||||||||||| |||||||||||||| |||||||| || || || ||||||||||
Sbjct 1304 GGTGGAGATCATTCCTTTGTGGTGGATCGACCGGTCTGTTCATCTACGCATACTGCTTAT 1363
Query 1679 ACTACTACTACGCAAGATCAGACATGTCTGGTTTCATGCAAACATCCTTCTT-CTTCGGG 1737
|||| ||||| ||| ||||||||||||| ||||| |||||||| || || || ||||||
Sbjct 1364 ACTATTACTATGCACGATCAGACATGTCGGGTTTTATGCAAACCTCGTTTTTTCTTCGGA 1423
Query 1738 TACATGGCTTGCATTTGTTACGGTTTCTTCCTCATGCTTGGAACCGTTGGCTTCCGCGCT 1797
|||| |||||||||||| ||||| ||||| | ||||| ||||| || |||||| | |
Sbjct 1424 TACAAGGCTTGCATTTGCTACGGACTCTTCTTAATGCTGGGAACAGTCGGCTTCTGTGGA 1483
Query 1798 GCTCTCCTCTTCGTCCGCCACATTTACCGGTCGATTAAATGCGAGTAA 1845
|| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1484 GCCCTCCTCTTCGTCCGTCACATTTACCGGTCGATCAAATGCGAGTAA 1531
Score = 219 bits (118), Expect = 1e-55
Identities = 164/186 (88%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 75 ACCAACGACGCTGCTCC-TCTTTATCGGAGCTCTCATCTTCTCCGGCGCCGGTAC-TGTC 132
||| |||||||| |||| || || |||||||| || |||||||||||||||| | ||||
Sbjct 9 ACCGACGACGCTTCTCCTTC-TTGTCGGAGCTATCCTCTTCTCCGGCGCCGG-CCATGTC 66
Query 133 AGATCCGATGCCTCCGACCACCGTTACAAGGACGGTGACTCCGTTCCTCTCTACGCCAAC 192
||||| || ||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 67 AGATCTGACGCCTCCGACCACCGTTACAAGGAAGGAGACACCGTTCCTCTCTACGCCAAC 126
Query 193 AAGGTCGGCCCCTTTCACAATCCCAGTGAGACGTATCGCTATTTCGATCTCCCCTTTTGT 252
||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||
Sbjct 127 AAGGTCGGCCCATTTCACAATCCAAGTGAGACGTATCGGTATTTTGATCTTCCCTTCTGT 186
Query 253 ATTCCA 258
|| |||
Sbjct 187 ATCCCA 192
> Ahg947354 jgi|Araly1|947354|scaffold_703583.1
Length=1826
Score = 933 bits (505), Expect = 0.0
Identities = 1352/1752 (77%), Gaps = 94/1752 (5%)
Strand=Plus/Plus
Query 145 TCCGACCACCGTTACAAGGACGGTGACT-CCGTTCCTCTCTACGCCAACAAGGTCGGCCC 203
||||| ||||||||||||| |||||| | |||||||| ||||| ||||| ||||| ||
Sbjct 102 TCCGATCACCGTTACAAGGTCGGTGA-TGATGTTCCTCTTTACGCTAACAAAGTCGGTCC 160
Query 204 CTTTCACAATCCCAGTGAGACGTATCGCTA-TTTCGATCTCCCCTTTTGTATTC--CAGA 260
||||| ||||||||||| || ||| | || ||| ||||| || || || ||| |||
Sbjct 161 GTTTCATAATCCCAGTGAAACATATAGATACTTT-GATCTTCCGTTCTG--TTCATCAGC 217
Query 261 GGGTGTGAAAGATAAGAAGGAAGCTCTTGGTGAGGTT-TTGAATGGGGATAGGCTT-GTT 318
||| || || |||||||||||||| || || ||| || ||||| ||| || || ||
Sbjct 218 TCCTGTTAAGGAGAAGAAGGAAGCTCTAGGGGAAGTTCTT-AATGGAGATCGG-TTAGTC 275
Query 319 AGTGCTCCATACAAGCTT-AACTTTAGAGATGAGAAAG-ACTCAG-AGGTGTACTGTAAA 375
||||| || ||||| ||| | ||| | | |||| ||| | || | || || | ||||
Sbjct 276 AGTGCACCGTACAAACTTGAGTTTTTG-GGTGAG-AAGAATTCTGAAGTTGCA-TGTAGG 332
Query 376 AAGAAGCTT-AGTAGAGAAGAAGTTG-AACACTTTCGAAGA-GCTG-TTGAAAAAGATTA 431
||| || || ||||||||||| |||| || | ||||| || | || ||| ||||| ||
Sbjct 333 AAG-AGGTTGAGTAGAGAAGATGTTGCAA-AGTTTCG-TGATG-TGATTGCGAAAGACTA 388
Query 432 TTACTTTCAGATGTATTATGATGATTTGCCTATTTGGGGATTCATTGGGAAGGTGGACAA 491
|||||||||||||||||||||||| ||||| || ||||||||| | |||||||| | |||
Sbjct 389 TTACTTTCAGATGTATTATGATGACTTGCCCATCTGGGGATTCCTGGGGAAGGTTGTCAA 448
Query 492 AGAGAGCAAATCTGATCCTA-GCGAGTTTAAATATTTTCTCTACAAACA-CATCCAGTTT 549
|||| | ||| ||||||| | ||||| |||||||| ||||| ||| || | | ||||||
Sbjct 449 AGAGGGAAAAACTGATCC-ATCCGAGTATAAATATTATCTCTTCAATCATC-TACAGTTT 506
Query 550 GAGATTTTGTACAATAAGGATCGGGTGATTGAAATCAATGCT-AGAATGGATCC-TCA-T 606
|||||||| || |||||||| || || |||||||| | || | |||| || || | |
Sbjct 507 GAGATTTTCTATAATAAGGACCGTGTTATTGAAATTATTG-TGAGAACAGA-CCAGAATT 564
Query 607 TCGCTTGTGGATCTT-ACTGAGGATAAGGAAGTCGATGCT-GAGTTT-ATGTACACTG-T 662
|| || ||||| ||| |||||||| ||||||||| | | | || ||| | ||||| | |
Sbjct 565 TC-CTCGTGGA-CTTGACTGAGGACAAGGAAGTCCAAG-TGGA-TTTCACATACACAGTT 620
Query 663 -GAAGTGGAAGGAAACTGAGACT-TCTTTTGAGAAAAGAATGGATAAGTATGCT-A-TGT 718
| | ||||||||||| || | | | || ||||| || ||||| || || || | ||
Sbjct 621 CG-A-TGGAAGGAAACCGA-AATCCCATTCGAGAAGAGGATGGAGAA--ATACTCACTGG 675
Query 719 CTTCTTCTCTTCCACATCACTTGGAAATCCACTGGTTCTCCATTATTAACTCCTGCGTCA 778
|||| || | |||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 676 CTTCCTCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCATTAACTCATGTGTCA 735
Query 779 CTGTCCTTCTTTTGACTGGTTTCCTTGCAACCATCCTGATGCGGGTCCTCAAGAATGATT 838
| || ||||| ||||||||||||||||| || || || ||||| ||| | ||||||||||
Sbjct 736 CAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTTATGCGAGTCTTGAAGAATGATT 795
Query 839 TCATGAAGTATGCTCAAGATGAGGAAGCTG-CTGATGATCAAGAGGAAACCGGATGGAAA 897
| | |||||||| || ||||| || || | | ||||| ||||| || || || ||||||
Sbjct 796 TTGTCAAGTATGCACATGATGAAGAGGCAGTC-GATGACCAAGAAGAGACTGGGTGGAAA 854
Query 898 -TACATTCATGGAGATGTCTTCCGGTTCCC-AAAGAACAAATCTCT-CTTTGCTGCATCT 954
| || ||||| ||||| || ||||||| ||| | |||||| || || |||||| |
Sbjct 855 CTG-ATCCATGGTGATGTATTTAGGTTCCCCAAACA-CAAATCCCTACTG-GCTGCAGCC 911
Query 955 CTTGGTAGC-GGTACCCAGTTGTTCACTCTGACCA-TCTTCATTTTCATGCTTTCACTT- 1011
|||||| | || || || ||||| || || | | | ||||| ||||||||| | ||
Sbjct 912 CTTGGTT-CTGGCACACAATTGTTTACACT-AGCTGTTTTCATCTTCATGCTTGCG-TTA 968
Query 1012 GTTGGAGTGTTCTATCCATACAACCGTGGAGCACTCTTCACTGCTTTGGTCGTTATCTAT 1071
||||| || || ||||| ||||||||||||||| | || ||||| || || || || |||
Sbjct 969 GTTGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAGTGGTCATATAT 1028
Query 1072 GCTCTCACATCTGGAATTGCCGGATACACTGCCTCCT-CTTTCTACTGTCAACTCGAAGG 1130
|| || || || || |||||||| || ||||| | || ||||||| || || || |||||
Sbjct 1029 GCACTTACTTCAGGGATTGCCGGCTATACTGC-TGCTTCTTTCTATTGCCAGCTAGAAGG 1087
Query 1131 AAAGAATTGGGTGAGAAAT-TTGCTGCTAACTGGAGGTCTCTTCTGTGGCCCACTATTT- 1188
|| |||||||| || ||| || | || |||||| | || |||||||| || || |||
Sbjct 1088 AACTAATTGGGTTAGGAATGTTA-TACTGACTGGAAGCCTTTTCTGTGGACCTCT-TTTG 1145
Query 1189 CTCACCTTCTGCTTCCTAAACACCGTTGCAATCGCATAC-AGTGCAACTGCCGCTCTTCC 1247
||||| |||| ||| || || || |||||||| || ||| | || ||||| || || |
Sbjct 1146 CTCACTTTCTCCTTTCTTAATACTGTTGCAATTGCTTACCAA-GCCACTGCAGCA-TTGC 1203
Query 1248 C-TTTGGAACCATCATAGTGATCGTCCTCATATGGACACTAGTCACTTCGCCTTTACTTG 1306
| ||||| || || | || || |||| |||||| |||| || ||||| || || ||
Sbjct 1204 CATTTGGGACAATTGTTGTTATTTTCCTTATATGGGCACTGGTTACTTCACCATTG-TTA 1262
Query 1307 -TGTTGGGTGGTATTGCCGGTAAAAACAGCAAAGCTGAGTTCCAAGCTCCA-GTCCGCAC 1364
| |||| |||||||| || || ||||| ||| | ||||| |||||||| ||| | ||
Sbjct 1263 ATACTGGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTC-GTAC 1321
Query 1365 CACTAAGTATCCTCGGGAGATCCCGCCACTCCCATGGTACAGGAGTGCTGTACCGCAGAT 1424
||| || ||||| | |||||||| ||| | | |||||| |||| | | ||||||||
Sbjct 1322 CACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAACACTTCCGCAGAT 1381
Query 1425 GGCCATGGCTGGATTTCTT-CCTTTCAGTGCCATCTACATCGAGCTATATTACATCTTTG 1483
||| |||||||| ||| || || ||||||||||| ||||||||||| || ||||| ||||
Sbjct 1382 GGCTATGGCTGGTTTT-TTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTTG 1440
Query 1484 CCAGTGTTTGGGGCCATC-GTATCTATACCATTTACAGCATCCTCT-TCATCGTCTTCAT 1541
||||||||||||| || | | || || ||||| || || || || | | || |||||| |
Sbjct 1441 CCAGTGTTTGGGGTCA-CAGAATATACACCATCTATAGTATTCTGTCT-ATTGTCTTCCT 1498
Query 1542 CATCCT-GTTGATCGTCACTGCTTTTATAACAGTTGCCCTT-ACTTACTTCCAACTCGCT 1599
|| || || || ||||||||||| || || ||||| || || ||||||||||| |||
Sbjct 1499 TATTCTCGTC-ATAGTCACTGCTTTCATCACGGTTGCA-TTGACATACTTCCAACTTGCT 1556
Query 1600 GCTGAAGATCATGAATGGTGGTGGAGATCATTCCTATGTGGTGGATCGACTGGTCTGT-T 1658
|||||||| ||||| ||||||||||||||||| |||||||||||||| || || || | |
Sbjct 1557 GCTGAAGACCATGAGTGGTGGTGGAGATCATTGCTATGTGGTGGATCAACGGG-CT-TAT 1614
Query 1659 T-ATATATGCGTACTGCTTATACTACTACTACGCAAGATCAGACATGTCTGGTTTCATGC 1717
| ||||| || |||||||| || |||||||| ||| | || || ||||| || |||||||
Sbjct 1615 TCATATACGCCTACTGCTTGTATTACTACTATGCACGGTCGGATATGTCAGGGTTCATGC 1674
Query 1718 AAACATCCTTCTTCTTCGGGTACATGGCTTGCATTTGTTACGGTTTCTTCCTCATGCTTG 1777
| || ||||||||||| || |||||||||||||| || ||||| |||||||||||||| |
Sbjct 1675 AGACTTCCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCG 1734
Query 1778 GAACCGTTGGCTTCCGCGCTGCTCTCCTCTTCGTCCGCCACATTTACCGGTCGATTAAAT 1837
| || | || ||||| ||| | || ||||| ||||| ||||||||||| ||||| || |
Sbjct 1735 GGACAATCGGATTCCGTGCTTCCCTTCTCTTTGTCCGTCACATTTACCGCTCGATCAAGT 1794
Query 1838 GCGAGTAAAACT 1849
||||||||||||
Sbjct 1795 GCGAGTAAAACT 1806
> Ahg913258 jgi|Araly1|913258|Al_scaffold_0001_3512
Length=345
Score = 327 bits (177), Expect = 2e-88
Identities = 297/352 (84%), Gaps = 19/352 (5%)
Strand=Plus/Plus
Query 1264 GTGATCGTCCTCATATGGACACTAGTCACTTCGCCTTTACTTGTGTTGGGTGGTATTGCC 1323
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||| ||
Sbjct 4 GTGATCGTCCTTATATGGACTCTAGTCACATCGCCTTTACTCGTCTTGGGTGGTATCGCG 63
Query 1324 GGTAAAAACAGCAAAGCTGAGTTCCAAGC-TCCAGT-CCGCACCACTAAGTATCCTCGGG 1381
|| |||||||||||||| ||||||||||| | || | ||| || || || ||||| || |
Sbjct 64 GGCAAAAACAGCAAAGCGGAGTTCCAAGCAT-CA-TGCCGTACAACCAAATATCCCCGTG 121
Query 1382 AGATCCCGCCACTCCCATGGTACAGGAGTGCTGTACCGCAGATGGCCATGGCTGGATTTC 1441
|||| || |||||||| |||||||| |||||| | || ||||||||||||||||| |||
Sbjct 122 AGATTCCACCACTCCCTTGGTACAGAAGTGCTATTCCTCAGATGGCCATGGCTGGTTTTT 181
Query 1442 TTCCTTTCAGTGCCATCTACATCGAGCTATATTACATCTTT-GCCAGTGTTTGGGGCCAT 1500
|||||||||||||||||||||||||||| || ||||| ||| || ||||| ||||| ||
Sbjct 182 TTCCTTTCAGTGCCATCTACATCGAGCTTTACTACAT-TTTCGCTAGTGTCTGGGGTCAC 240
Query 1501 CGTATCTATACCATTTACAGCATCCTCTTCATCGT-CTTCATCATCCTGTTGATCGTCAC 1559
|| ||||| ||||| ||||||||| |||||||| | || ||||| ||| | | ||
Sbjct 241 CGGATCTACACCATCTACAGCATCGTCTTCATCATTCT-CATCA-CCT-T----C---AC 290
Query 1560 TGCTTTTATAACAGTTGCCCTT-ACTTACTTCCAACTCGCTGCTGAAGATCA 1610
|||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 291 TGCTTTTATAACCGTTGCC-TTGACTTACTTCCAACTCGCTGCTGAAGATCA 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5