BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01980.1
Length=3682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484121 jgi|Araly1|484121|fgenesh2_kg.5__113__AT2G01980.1 5515 0.0
Ahg471645 jgi|Araly1|471645|fgenesh2_kg.1__1599__AT1G14660.1 1535 0.0
> Ahg484121 jgi|Araly1|484121|fgenesh2_kg.5__113__AT2G01980.1
Length=3537
Score = 5515 bits (2986), Expect = 0.0
Identities = 3343/3512 (95%), Gaps = 37/3512 (1%)
Strand=Plus/Plus
Query 52 TCAAATAAAATGACGACTGTAATCGACGCGACGATGGCGTATAGATTTCTGGAGGAAGCG 111
||||| |||||| ||||||||||||||||||||||| | ||| ||||||||||||||| |
Sbjct 22 TCAAAGAAAATGGCGACTGTAATCGACGCGACGATGACTTATCGATTTCTGGAGGAAGAG 81
Query 112 ACCGATTCGtcttcttcttcttcttcttcCAAACTAGAATCTAGCCCTGTCGACGCCGTT 171
|||| | ||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 82 ACCG----G-----TTCGTCTTCTTCTTCCAAAGTAGAATCTAGCCCCGTCGACGCCGTT 132
Query 172 CTCTTCGTCGGAATGTCTCTGGTACTCGGTATTGCTTCTAGGCACTTGCTTCGTGGAACT 231
||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 133 CTCTTCGTCGGAATGTCTCTGGTGCCCGGTATTGCTTCTAGGCATTTGCTTCGTGGAACT 192
Query 232 AGGGTTCCTTACACTGTCGCTCTTCTCGTTATCGGAATTGCTCTTGGATCTCTCGAATAT 291
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AGGGTTCCTTACACCGTCGCTCTTCTCGTTATCGGAATTGCTCTTGGATCTCTCGAATAT 252
Query 292 GGAGCTAAACATAACCTTGGAAAGATCGGCCATGGAATTCGTATCTGGAATGAGATCGAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 253 GGAGCTAAACATAACCTTGGAAAGATCGGCCATGGAATTCGTATCTGGAATGATATCGAT 312
Query 352 CCAGAACTTCTTTTAGCTGTTTTTCTTCCGGCTCTTCTTTTCGAGAGTTCGTTTTCAATG 411
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 313 CCTGAACTTCTTTTGGCTGTTTTTCTTCCGGCTCTTCTTTTCGAAAGTTCGTTTTCAATG 372
Query 412 GAAGTTCACCAAATTAAGAGGTGTCTGGGACAAATGGTGTTACTTGCTGTCCCTGGAGTT 471
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 373 GAAGTTCACCAGATCAAGAGGTGTCTGGGACAAATGGTGTTACTTGCTGGCCCTGGAGTT 432
Query 472 CTTATTTCAACAGCTTGTCTTGGATCGCTTGTGAAGGTCACGTTTCCGTATGAATGGGAC 531
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct 433 CTTATTTCAACAGCTTGTCTCGGATGGCTTGTGAAGGTCACGTTTCCGTATGACTGGGAC 492
Query 532 TGGAAAACGTCCTTGTTGCTTGGGGGACTTTTAAGTGCTACTGATCCGGTTGCTGTTGTT 591
||||||||||| |||||||||||||||||| |||||||||| || || ||||||||||||
Sbjct 493 TGGAAAACGTCGTTGTTGCTTGGGGGACTTCTAAGTGCTACCGACCCTGTTGCTGTTGTT 552
Query 592 GCTTTGCTAAAGGAGCTTGGTGCTAGTAAGAAGCTAAGCACCATAATTGAAGGGGAATCC 651
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GCTTTATTAAAGGAGCTTGGTGCTAGTAAGAAGCTAAGCACCATAATTGAAGGGGAATCC 612
Query 652 CTGATGAATGATGGGACGGCGATTGTTG-TTTTCCAGTTATTCTTAAAGATGGCT-ATGG 709
||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||
Sbjct 613 CTGATGAATGATGGGACGGCGATTG-TGCTTTTCCAGTTATTCTTAAAGATGG-TGATGG 670
Query 710 GGCAAAACTCTGACTGGAGTTCTATAATCAAATTTCTGCTTAAAGTCGCACTTGGAGCTG 769
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GACAAAACTCTGACTGGGGTTCTATAATCAAATTTCTGCTTAAAGTCGCACTTGGAGCTG 730
Query 770 TAGGCATTGGTCTGGCGTTTGGCATTGCATCAGTTATTTGGCTCAAGTTCATATTCAATG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TAGGCATTGGTCTGGCGTTTGGCATTGCATCAGTTATTTGGCTCAAGTTCATATTCAATG 790
Query 830 ACACTGTAATAGAGATTACTCTTACAATTGCAGTGAGCTATTTCGCATACTACACTGCTC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ACACTGTAATAGAGATTACTCTTACAATTGCAGTGAGCTATTTCGCATACTACACTGCTC 850
Query 890 AAGAGTGGGCTGGGGCTTCTGGTGTTTTGACGGTCATGACTTTGGGCATGTTTTATGCTG 949
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 851 AAGAGTGGGCTGGGGCTTCTGGTGTTTTGACGGTGATGACTTTGGGCATGTTTTATGCTG 910
Query 950 CATTTGCAAGGACAGCCTTTAAAGGTGACAGTCAAAAAAGCTTGCATCACTTCTGGGAAA 1009
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 911 CACTTGCAAGGACAGCCTTTAAAGGTGACAGTCAAAAAAGTTTGCATCACTTCTGGGAAA 970
Query 1010 TGGTTGCATATATTGCAAACACTTTGATATTTATCCTCAGTGGTGTTGTCATTGCTGAAG 1069
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TGGTTGCATATATTGCAAATACTTTGATATTTATCCTCAGTGGTGTTGTCATTGCTGAAG 1030
Query 1070 GCATTCTCGACAGTGATAAGATTGCCTACCAAGGGAATTCATGGCGATTTCTTTTTCTGC 1129
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1031 GCATTCTCGACAGCGATAAGATTGCCTACCAAGGGAATTCATGGGGATTTCTTTTTCTAC 1090
Query 1130 TATA-CGTTTACATCCAACTATCGCGTGTTGTTGTTGTTGGAGTTCTATATCCACTT-TT 1187
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 1091 TATATC-TTTACATCCAACTATCGCGTGGTGTTGTTGTTGGAGTTCTATATCCA-TTGTT 1148
Query 1188 ATGTCGTTTTGGCTATGGTTTGGATTGGAAAGAATCCATTATACTCGTATGGTCTGGTTT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 ATGTCGTTTTGGCTATGGTTTGGATTGGAAAGAATCCATTATACTCGTATGGTCTGGTTT 1208
Query 1248 GAGGGGCGCAGTGGCTCTTGCACTTTCTTTATCCGTGAAGCAATCAAGCGGAAATTCACA 1307
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1209 GAGGGGTGCAGTGGCTCTTGCACTTTCTTTATCCGTGAAGCAATCAAGCGGAGATTCACA 1268
Query 1308 TATCAGCAAGGAGACTGGAACATTGTTTCTTTTCTTCACGGGTGGAATTGTGTTCCTAAC 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TATCAGCAAGGAGACTGGAACATTGTTTCTTTTCTTCACGGGTGGAATTGTGTTCCTAAC 1328
Query 1368 TCTGATAGTTAATGGATCCACTACCCAATTTGTTCTACGCCTTCTTCGCATGGATATTTT 1427
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1329 TCTGATAGTTAATGGATCCACTACCCAATTTGTTCTACGCCTTCTTCGCATGGACATTTT 1388
Query 1428 ACCAGCCCCCAAGAAACGAATATTGGAATATACAAAGTACGAAATGTTGAATAAGGCCTT 1487
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1389 ACCAGCCCCCAAGAAACGAATATTGGAATATACAAAGTACGAAATGCTGAATAAGGCCTT 1448
Query 1488 ACGAGCGTTTCAAGATCTAGGAGACGATGAGGAGCTAGGACCTGCTGACTGGCCTACAGT 1547
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1449 ACGAGCGTTTCAAGATCTAGGAGATGATGAGGAGCTAGGACCTGCTGACTGGCCTACAGT 1508
Query 1548 TGAAAGTTATATTTCAAGCCTAAAAGGTTCAGAAGGGGAACTAGTTCATCATCCTCACAA 1607
||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1509 TGAGAGTTATATTTCAAGCCTAAAAAATTCAGAAGGGGAACTAGTTCATC--C-TCACAA 1565
Query 1608 TGGCTCTAAAATTGGAAGTCTTGACCCTAAAAGTTTAAAGGACATACGTATGCGGTTCTT 1667
||| ||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1566 TGGTTCTAAAAGTGGAAATCTTGACCCTAAGAGTTTAAAGGACATACGTATACGGTTCTT 1625
Query 1668 AAATGGTGTGCAAGCAACTTACTGGGAGATGCTTGATGAGGGCAGAATATCTGA-AGTTA 1726
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1626 AAATGGTGTGCAAGCAGCTTACTGGGAGATGCTTGATGAAGGCAGAATATCTGAGA-TTA 1684
Query 1727 CTGCTAATATTTTGATGCAGTCAGTGGATGAGGCGCTTGATCAGGTTTCTACAACTTTAT 1786
|||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||
Sbjct 1685 CTGCTAATATTTTGATGCAGTCAGTGGATGAGGCTCTTGATCAAGTTTCTACAAGTTTAT 1744
Query 1787 GTGATTGGAGAGGTCTAAAACCACATGTCAATTTCCCAAATTACTACAACTTTCTTCATT 1846
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1745 GTGATTGGAGAGGTCTAAAACCACACGTCAATTTCCCAAATTACTACAAGTTTCTTCATT 1804
Query 1847 CTAAAGTTGTCCCACGCAAGTTGGTCACATACTTTGCTGTCGAAAGACTAGAATCTGCTT 1906
||||| || |||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1805 CTAAAATTATCCCACACAAGTTGGTCACATACTTTGCTGTCGAAAGACTGGAATCTGCTT 1864
Query 1907 GCTACATTTCTGCTGCGTTTCTTCGCGCACATACAATTGCACGACAGCAATTGTATGATT 1966
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1865 GCTACATTTCTGCTGCATTTCTTCGCGCGCATACAATTGCACGACAGCAATTGTATGATT 1924
Query 1967 TTCTAGGGGAGAGTAATATTGGTTCCATTGTAATCAATGAAAGTGAAAAGGAAGGAGAGG 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTCTAGGGGAGAGTAATATTGGTTCCATTGTAATCAATGAAAGTGAAAAGGAAGGAGAGG 1984
Query 2027 AAGCAAAAAAGTTCTTGGAAAAAGTCCGATCTTCATTTCCTCAGGTTCTCCGTGTTGTGA 2086
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1985 AAGCGAAAGAGTTCTTGGAAAAAGTCCGATCTTCACTTCCTCAGGTTCTCCGTGTTGTGA 2044
Query 2087 AAACAAAACAAGTAACATATTCAGTGTTGAATCATTTACTCGGTTACATTGAAAACCTCG 2146
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2045 AAACAAAACAAGTAACGCATTCAGTGTTGAATCATTTACTGGGTTACATTGAAAACCTCG 2104
Query 2147 AGAAGGTTGGCTTGTTGGAGGAAAAAGAAATCGCTCATCTTCATGATGCTGTCCAGACCG 2206
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2105 AGAAGGTTGGCTTGTTGGAGCAAAAAGAAATCGCTCATCTTCATGATGCTGTCCAGACCG 2164
Query 2207 GCTTGAAAAAGCTTTTGAGAAACCCTCCAATAGTTAAACTTCCAAAATTGAGCGACATGA 2266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165 GCTTGAAAAAGCTTTTGAGAAACCCTCCAATAGTTAAACTTCCAAAATTGAGCGACATGA 2224
Query 2267 TCACCTCACATCCGTTATCGGTTGCTCTTCCTCCTGCATTTTGTGAACCTTTAAAACACT 2326
||||||||||||||||||| |||||||||||||| ||| | ||||||||| ||||||| |
Sbjct 2225 TCACCTCACATCCGTTATCCGTTGCTCTTCCTCCCGCAATATGTGAACCTCTAAAACATT 2284
Query 2327 CGAAAAAAGAACCAATGAAACTGCGTGGTGTCACGCTTTATAAAGAAGGTTCAAAGCCAA 2386
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2285 CGAAAAAAGAACCAATGAAGCTGCGTGGTGTCACACTTTATAAAGAAGGTTCAAAGCCAA 2344
Query 2387 CTGGAGTCTGGCTTATTTTTGATGGCATCGTTAAGTGGAAAAGTAAGATCTTAAGCAACA 2446
|||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| |
Sbjct 2345 CTGGAGTCTGGCTTATTTTTGATGGCATTGTTAAGTGGAAAAGCAAAAGCTTAAGCAATA 2404
Query 2447 ATCACTCGCTGCATCCAACTTTTTCTCACGGTAGTACATTGGGACTCTACGAAGTCCTCA 2506
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405 ATCACTCGTTGCATCCAACTTTTTCTCACGGTAGTACATTGGGACTCTACGAAGTCCTCA 2464
Query 2507 CTGGGAAGCCATATCTGTGCGACTTGATTACAGATTCTATGGTTCTTTGCTTTTTCATTG 2566
|||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 2465 CTGGGAAGCCATATATGTGTGACATGATTACAGATTCTATGGTTCTTTGCTTTTTCATCG 2524
Query 2567 ATAGCGAGAAAATTCTATCACTACAATCAGATTCTACCATCGATGATTTCCTTTGGCAGG 2626
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2525 ATAGCGAAAAAATTCTCTCACTACAATCAGATTCTACCATCGATGATTTCCTTTGGCAGG 2584
Query 2627 AAAGTGCATTGGTTCTTCTCAAACTCTTGCGTCCTCAGATATTTGAAAGTGTGGCAATGC 2686
||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 2585 AAAGTGCATTGGTTCTTCTGAAACTCTTGCGTCCTCAGATATTTGAAAATGTGGCTATGC 2644
Query 2687 AAGAATTACGAGCCCTTGTTTCAACTGAAAGCTCGAAACTTACAACATATGTGACGGGAG 2746
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2645 AAGAATTACGAGCCCTTGTTTCAACTGAAAGCTCGAAACTGACAACATATGTGACGGGAG 2704
Query 2747 AATCAATCGAAATCGACTGCAACAGCATTGGTTTATTATTAGAAGGATTCGTAAAACCGG 2806
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2705 AATCAATCGAAATCGACTGCAACAGCATTGGTTTGTTATTAGAAGGATTCGTAAAACCGG 2764
Query 2807 TTGGTATCAAAGAAGAGCTTATATCATCTCCCGCCGCATTATCACCTTCTAACGGGAATC 2866
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2765 TTGGTATCCAAGAAGAGCTTATATCATCTCCCGCCGCATTATTACCTTCTAACGGGAATC 2824
Query 2867 AAAGCTTCCATAATTCATCAGAAGCTTCAGGTATCATGAGAGTCAGTTTCTCACAACAAG 2926
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2825 AAAGCTTCCATAATTCATCAGAAGCTTCAGGTATCATGAGAGTGAGTTTCTCACAACAAA 2884
Query 2927 CAACACAGTATATTGTTGAGACGAGAGCAAGAGCAATCATCTTCAACATTGGAGCATTTG 2986
||||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2885 CAACACAATACAGTGTTGAGACAAGAGCAAGAGCAATCATCTTCAACATTGGAGCATTTG 2944
Query 2987 GAGCTGATAGGACTCTACATCGAAGACCATCTTCGTTAACACCACCACGTAGCTCAAGCT 3046
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2945 GAGCTGATAGGACTCCACATCGAAGACCATCTACGTTAACACCACCACGTAGCTCAAGCT 3004
Query 3047 CTGATCAGCTTCAGAGATCAT--TT-CGTAAAGAACACAGAGGTCTCATGAGCTGGCCTG 3103
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 3005 CTGATCAGCTTCAGAGATCATCATTTCGTAAAGAACACAGAGGTCTCATGAGCTGGCCTG 3064
Query 3104 AAAATATTTAC---GCCAAACAACAACAAGAGATCAATAAAACGACATTAAGTTTATCTG 3160
||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 3065 AAAGTATTTACAAAGCCAAACAACAACAAGAGATCAATAGAACGGCATTAAGTTTATCTG 3124
Query 3161 AACGAGCAATGCAACTCAGCATTTTCGGCAGCATGGTTAATGTGTACAGAAGGAGTGTAA 3220
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 3125 AACGAGCAATGCAACTCAGCATTTTCGGCAGCATGGTCAATGTTTACAGAAGGAGTGCAA 3184
Query 3221 GTTTCGGTGGGATCTATAATAACAAGTTACAAGATAACTTGTTGTACAAAAAACTTCCAC 3280
||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 3185 GTTTCGGTGGGATCTATAATAACAAGTCACAAGATAACTTTTTGTACAAAAAACATCCAC 3244
Query 3281 TAAACCCAGCTCAAGGTCTCGTTTCAGCCAAATCAGAAAGTTCAATTGTGACCAAGAAGC 3340
||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 3245 TAAACTCAGCTCAAGGTCTCGTTTCAGCCAGATCAGAAAGTTCGATTGTGACCAAGAAGC 3304
Query 3341 AGCTTGAAACCCGTAAACATGCGTGTCAGCTTCCTCTGAAAGGGGAAAGCAGCACAAGGC 3400
||||||||||||||||| || |||||||| |||||||| ||| ||||||||||| |||||
Sbjct 3305 AGCTTGAAACCCGTAAATATCCGTGTCAGGTTCCTCTGCAAGCGGAAAGCAGCAAAAGGC 3364
Query 3401 AAAATACGATGGTTG---AATCAAGCGATGAAGAAGATGAAGATGAAGGAATCGTTGTGA 3457
|||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 3365 GAAATACGATGGTTGTTGAATCAAGCGATGAAGAAGATGAAG--GAA----TCGTTGTGA 3418
Query 3458 GAATCGATTCTCCGAGTAAAATCGTTTTCAGGAACGATCTATGAGAATTGAGATGTTTGT 3517
||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 3419 GAATCGATTCTCCGAGTAAAATCGTTTTCTGGAACGATCTATGAGCAGTGAGATGTTTGT 3478
Query 3518 AACATAAGAAAACAAAATTGTTAGCTTACTCT 3549
||||||| ||||||||| ||||||||||||||
Sbjct 3479 AACATAATAAAACAAAAATGTTAGCTTACTCT 3510
> Ahg471645 jgi|Araly1|471645|fgenesh2_kg.1__1599__AT1G14660.1
Length=2318
Score = 1535 bits (831), Expect = 0.0
Identities = 1741/2174 (80%), Gaps = 88/2174 (4%)
Strand=Plus/Plus
Query 157 CCTGTCGACGCCGTTCTCTTCGTC-GGAA-TGTCTCTGGTACTCGGTATTGCTTCTAGGC 214
||||| || |||||| | |||| | |||| | || ||||| ||||| | || | ||| |
Sbjct 100 CCTGTTGATGCCGTTATTTTCG-CGGGAACT-TCGCTGGTTCTCGGCACCGCCTGTAGAC 157
Query 215 ACTTGCTTCGTGGAACTAGGGTTCCTTACACTGTCGCTCTTCTCGTTATCGGAATTGCTC 274
| ||| || || ||||| ||||| ||||| |||| ||||||||| ||||| |||| ||
Sbjct 158 ATTTGTTTAACGGCACTAGAGTTCCGTACACCGTCGTTCTTCTCGTCATCGGCATTGTTC 217
Query 275 TTGGATCTCTCGAATATGGAGCTAAACATAACCTTGGAAAGATCGGCCATGGAATTCGTA 334
| |||||||| ||||||||| |||| ||||| ||||| ||| ||||||||||||| ||||
Sbjct 218 TCGGATCTCTAGAATATGGAACTAATCATAATCTTGGGAAGCTCGGCCATGGAATCCGTA 277
Query 335 TCTGGAATGAGATCGATCCAGAACTTCTTTTAGCTGTTTTTCTTCCGGCTCTTCTTTTCG 394
|||||||||| || | || || || ||||| ||||||||||| || |||||||||||||
Sbjct 278 TCTGGAATGATATAAACCCTGACCTACTTTTGGCTGTTTTTCTCCCTGCTCTTCTTTTCG 337
Query 395 AGAGTTCGTTTTCAATGGAAGTTCACCAAATTAAGAGGTGTCTGG-GACAAATGGTGT-T 452
|||| ||||| || ||||| || ||||| || ||||||||| ||| | |||||||| | |
Sbjct 338 AGAGCTCGTTCTCCATGGATGTGCACCAGATCAAGAGGTGTATGGTG-CAAATGGT-TCT 395
Query 453 ACTTGCTGTCCCTGGAGTTCTTATTTCAACAGCTTGTCTTGGATCGCTTGTGAAGGTCAC 512
||||||| |||||||||||| ||||| || |||||||||| | ||| | ||| ||||
Sbjct 396 GCTTGCTGGCCCTGGAGTTCTGATTTCTACCTTTTGTCTTGGAGCTCTTATAAAGCTCAC 455
Query 513 GTTTCCGTATGAA-TGGGACTGGAAAACGTCCTTGTTGCTTGGGGGACTTTTAAGTGCTA 571
||||| ||| || |||||||||||||| || ||||||||||| ||||||||| | ||||
Sbjct 456 TTTTCCATAT-AACTGGGACTGGAAAACATCATTGTTGCTTGGAGGACTTTTAGGAGCTA 514
Query 572 CTGATCCGGTTGCTGTTGTTGCTTTGCTAAAGGAGCTTGGTGCTAGTAAGAAGCTAAGCA 631
| || || || |||||||||||| ||||||||||||||||||||||||||||| | | ||
Sbjct 515 CCGACCCCGTGGCTGTTGTTGCTCTGCTAAAGGAGCTTGGTGCTAGTAAGAAGATGACCA 574
Query 632 CCATAATTGAAGGGGAATCCCTGATGAATGATGGGACGGCGATTGTTGTTTTCCAGTTAT 691
| ||||||| |||||||| ||||||||||| ||| || | || |||||||||||||
Sbjct 575 CTTTAATTGACGGGGAATCTCTGATGAATGACGGGGTATCGGTAGTGGTTTTCCAGTTAT 634
Query 692 TCTTAAAGATGGCT-ATGGGGCAAAACTCTGACTGGAGTTCTATAATCAAATTTCT-G-C 748
|||| ||||||| | |||||||| |||||||| ||| |||| |||||||||||||| | |
Sbjct 635 TCTTCAAGATGG-TGATGGGGCATAACTCTGATTGGGGTTCCATAATCAAATTTCTTGTC 693
Query 749 TTA-AAGTCGCACTTGGAGCTGTAGGCATTGGTCTGGCGTTTGGCATTGCATCAGTTATT 807
| || || | |||||||||||||||||||| | || ||||| |||||||||||| ||
Sbjct 694 C-AGAACTC--ATTTGGAGCTGTAGGCATTGGTATAGCTTTTGGAATTGCATCAGTTTTT 750
Query 808 TGGCTCAAGTTCATATTCAATGACACTGTAATAG-AGATTACTCTTACAATTGCAGTGAG 866
||||| || || |||| ||||||||| || | | |||| ||| | ||| || ||| |||
Sbjct 751 TGGCTTAAATTTATATACAATGACACGGTGGT-GCAGATCACTGTAACACTTTCAGCGAG 809
Query 867 CTATTTCGCATACTACACTGCTCAAGAGTGGGCTGGGGCTTCTGGTGTTTTGACGGTCAT 926
||||||||| || |||||||| |||||||||||||||| |||||| ||||||| |||||
Sbjct 810 CTATTTCGCTTATTACACTGCGCAAGAGTGGGCTGGGGTTTCTGGAATTTTGACTGTCAT 869
Query 927 GACTTTGGGCATGTTTTAT-GCTGCATTTGCAAGGACAGCCTTTAAAGGTGACAGTCAAA 985
|| |||||| ||||||| | |||||||||||||||||| | |||||||||||||||||
Sbjct 870 GATTTTGGGGATGTTTT-TCGCTGCATTTGCAAGGACATCATTTAAAGGTGACAGTCACC 928
Query 986 AAAG-CTTGCATCACTTCTGGGAAATGGTTGCATATATTGCAAACACTTT-GATATTTAT 1043
| || || |||||||||||||||||||| || ||||||||||| || || | | |||||
Sbjct 929 AGAGTCT-GCATCACTTCTGGGAAATGGCCGCTTATATTGCAAATACATTAGTT-TTTAT 986
Query 1044 CCTCAGTGGTGTTGTCATTGCTGAAGGCATTCTC-GACAGT-GAT-AAGATTGCCTACCA 1100
|||||||| ||| | ||||||||||||||||| | | || | || || | ||| |
Sbjct 987 ACTCAGTGGAGTTATTATTGCTGAAGGCATTCTTAG-CGGTCGGGCAATAT--CTTACAA 1043
Query 1101 AGGGAATTCATGGCGATTTCTTTTTCTGCT-ATACGTT-TACATCCAACTATCGCG-TGT 1157
||| || || ||| | || ||||| || || |||| || || ||||||| || || |||
Sbjct 1044 AGGAAACTCGTGGGGCTTCCTTTTCCT-CTTATAC-TTGTATGTCCAACTTTCCCGCTGT 1101
Query 1158 TGTTGTTGTTGGAGTTCTATATCCACTTT-TATGTCGTTTTGGCTATGGTTTGGATTGGA 1216
||||| ||||||||||| || ||| || |||| |||||||||||||| ||||||||||
Sbjct 1102 -GTTGTGGTTGGAGTTCTGTACCCA-TTGCTATGCCGTTTTGGCTATGGCTTGGATTGGA 1159
Query 1217 AAGAATCCATTATACTCGTATGGTCTGGTTTGAGGGGCGCAGTGGCTCT-TGCACTTTCT 1275
| |||||||| |||||| |||||||| || ||||| || || | || | | || ||
Sbjct 1160 AGGAATCCATCATACTCACGTGGTCTGGATTAAGGGGTGCTGTTTCGCTGT-CGCTCGCT 1218
Query 1276 TTATCCGTGAAGCAATCAAGCGGAAATTCACATATCAGCAAGGAGACTGGAACATTGTTT 1335
|||| || || |||||||| ||||||||| || |||| ||| || |||||| ||||
Sbjct 1219 CTATCTGTAAAACAATCAAGTGGAAATTCATATCTCAGTTCGGATACGGGAACAAGGTTT 1278
Query 1336 CTTTTCTTCACGGGTGGAATTGTGTTCCTAACTCTGATAGTTAATGGATCCACTACCCAA 1395
|| ||| |||| ||||||||||| ||||||||| || | |||||||||||||||||||||
Sbjct 1279 CTATTCCTCACAGGTGGAATTGTTTTCCTAACTTTGGTTGTTAATGGATCCACTACCCAA 1338
Query 1396 TTTGTTCTA-CGCCTTCTTCGCATGGATATTTTACCAGCCCCCAAGAAACGAATATTGGA 1454
|| | || | ||||||||||||||| | |||| | ||| | |||||||||||||||||
Sbjct 1339 TTCCT-CTTGCACCTTCTTCGCATGGACACTTTAACGGCCACTAAGAAACGAATATTGGA 1397
Query 1455 ATATACAAAG-TACGAAATGTTGAATAAGGCCTTACGAGCGTTTCAAGATCTAGGAGACG 1513
||||||||| | |||||| |||| | || ||| ||| ||| || |||||||||| |
Sbjct 1398 GTATACAAAGATT-GAAATGATGAAGACCGCTTTAAAAGCTTTTGAAAATCTAGGAGATG 1456
Query 1514 ATGAGGAGCTAGGACCTGCTGACTGGCCTACAGTTGA-AAGTTATATTTCAAGCCTAAAA 1572
| ||||||| ||| || ||||||||||||||||| | ||| ||||||||||| | |||
Sbjct 1457 ACAAGGAGCTTGGATCTACTGACTGGCCTACAGTT-ATAAGACATATTTCAAGCTTGAAA 1515
Query 1573 GGTTCAGAAGGG-GAACTAGTTCATCATCCTCACAATGGCT-CTAAAATTGGAAGTCTTG 1630
| || ||||||| || | | || | ||||||||||||| | | || | ||||||||||
Sbjct 1516 GATTTAGAAGGGAGA-CAAATT-A--ATCCTCACAATGGGTACGAAGCT-GGAAGTCTTG 1570
Query 1631 ACCCTAA-AAGTTTAAAGGACATACGTATGCGGTTCTTAAATGGTGTGCAAGCAACTTAC 1689
|||||| || | ||| |||||||||||| || ||||||||||||| || ||| |||||
Sbjct 1571 ACCCTACTAA-TATAATGGACATACGTATACGCCTCTTAAATGGTGTCCAGGCAGCTTAC 1629
Query 1690 TGGGAGATGCTTGATGAG-GGCAGAATATCTGAA-GTTACTGCTAATATTTTGATGCAGT 1747
||||||||||||||||| || |||||| | || || ||||| ||| |||||||||| |
Sbjct 1630 TGGGAGATGCTTGATGATAGG-AGAATAACACAATGT-ACTGCCAATGTTTTGATGCAAT 1687
Query 1748 CAGTGGATGAGGCGCTTGATCAGGTTTCTACAA---CTTTATGTGATTGGAGAGGTCTAA 1804
|||| |||||||| ||||| | |||||||| | ||||| | || ||||| ||| ||
Sbjct 1688 CAGTAGATGAGGCACTTGACCTTGTTTCTACCAGTTCTTTAAGCGACTGGAGGGGTTTAG 1747
Query 1805 AACCACATGT-CAATTTCCCAAATTACTACAACTTTCTTCATTCTAAAGTTGTCCCACGC 1863
|||||| ||| || |||||||||||||||||| |||||||| || ||| || |||| |||
Sbjct 1748 AACCACTTGTTCA-TTTCCCAAATTACTACAAGTTTCTTCAATCAAAAATTATCCCCCGC 1806
Query 1864 AAGTTGGTCACATACTTTGCT-GTCGAAAGACTAGAATCTGCTTGCTACATTTC-TGCTG 1921
||||||||||| | |||| | || |||||||| ||||||||||| | |||||| | ||
Sbjct 1807 AAGTTGGTCACGCA-TTTGATCGTTGAAAGACTGGAATCTGCTTGTTGCATTTCCTT-TG 1864
Query 1922 CGTTTCT-TCGCGCACATACAATTGCACGACAGCAATTGTATGATTTTCTAGGGGAGAGT 1980
| ||||| | | || |||| ||||| |||||||||||| |||| || ||||| | |||
Sbjct 1865 CATTTCTAT-GTGCCCATAGGATTGCGCGACAGCAATTGCATGAATTCCTAGGTAACAGT 1923
Query 1981 AATATTGGTTCCATTGTAATCAATGAAAGTGAAAAGGAAGGAGAGGAAGCAAAAAAGTTC 2040
|| |||| ||| | |||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 1924 AACATTGCTTCTACTGTAATCAATGAAAGTGAGGTGGAAGGAGATGAAGCAAAACAGTTC 1983
Query 2041 TTGGAAAAAGTCCG-ATCTTCATTTCCTCAGGTTCTCCGTGTTGTGAAAACAAAACAAGT 2099
|||||| | ||||| | ||||||||| |||||| | ||||| ||||||||| ||||||
Sbjct 1984 TTGGAAGATGTCCGTAA-TTCATTTCCCCAGGTTTTGAGTGTTTTGAAAACAAGACAAGT 2042
Query 2100 AACATATTCA-GTGTTGAATCATTTAC-TCGGTTACATTGAAAACCTCGAGAAGGTTGG- 2156
|||| | | | ||| |||||||| || | ||||| || ||||||| |||||||||||
Sbjct 2043 AACACAGT-ATGTGCTGAATCATCTAAAT-GGTTATATCAAAAACCTTGAGAAGGTTGGG 2100
Query 2157 CTTGTTGGA-GGAAAAAGAAATCGCTCATCTTCATGATGCTGTCCAGACCGGCTTGAAAA 2215
|| ||| || || ||| ||| | |||||||||| |||| ||| ||| | | ||||| |
Sbjct 2101 CT-GTTAGAAGGGAAA-GAAGTTTCTCATCTTCAAGATGTTGTTCAGTCTGACTTGAGGA 2158
Query 2216 AGCTTTTGAGAAACCCTCCAATAGTTAAACTTCCAAA-ATTGAGCGA-CATGATCACCT- 2272
|||| |||||||| ||||| || | ||||||||||| || || ||| | | ||||||
Sbjct 2159 AGCTCTTGAGAAATCCTCCTTTACTAAAACTTCCAAATATAGA-CGATC-TAATCACCAG 2216
Query 2273 CACATCCGTTATCG 2286
|| |||| ||||||
Sbjct 2217 CA-ATCCTTTATCG 2229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139100429315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5