BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01990.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484122 jgi|Araly1|484122|fgenesh2_kg.5__114__AT2G01990.1 1101 0.0
> Ahg484122 jgi|Araly1|484122|fgenesh2_kg.5__114__AT2G01990.1
Length=845
Score = 1101 bits (596), Expect = 0.0
Identities = 773/857 (90%), Gaps = 18/857 (2%)
Strand=Plus/Plus
Query 56 ATACATGTGGTTTCATGAATAGATCGCCGGAACATATTTTCGGATCACCGGAGATTGATT 115
|||||| ||| ||||||||| ||||||||||||| | |||| ||||||||||||| ||||
Sbjct 1 ATACATATGGATTCATGAATGGATCGCCGGAACAGAGTTTCCGATCACCGGAGATGGATT 60
Query 116 ACTCCGACGTCTCCACAGGTTACCTCGAAGACGCACTTATCGAGTCCGGTGAGAGAAGCA 175
||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 61 ACTCCGACGTCTCCACAGGTTACCTCGAAGACGCAATTATCGAATCTGGTGAGAGAAGCA 120
Query 176 AAAGGAGACGTCTCTTGTTCGAGGATCCGTCCAAATCTTTTAACGATGATGAT-TCGCAG 234
||||||||||||||||||||||||||||||| ||||| || || ||| || || | ||||
Sbjct 121 AAAGGAGACGTCTCTTGTTCGAGGATCCGTCAAAATCCTTGAAGGATAATTATAT-GCAG 179
Query 235 AACGATTGGGGCCTGCATGAGAGTTATAGCTGTTTGAATAGTCAGTTTGTCACTCCACAT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACGATTGGGGCCTGCATGAGAGTTATAGCTGTTTGAATAGTCAGTTTGTCACTCCACAT 239
Query 295 GTTAACACAGGTGAACGTATAAGTGGAGTCAGTTACTGTCAGGAGACGATATCGA-ATGT 353
||||| ||||||| ||||| || |||||| ||||||| | | ||| | ||||||| | |
Sbjct 240 GTTAATACAGGTGCACGTAAAATTGGAGTTAGTTACTTTGAAGAGCCAATATCGACA-GC 298
Query 354 TTACGAGTCTCCCGACACTTCTGTCTCTTATGACAAAATTTATGTTCGAGAAAAATCTCC 413
|||||||||||||||||||||||| |||| | |||||| ||| ||||||||||||
Sbjct 299 TTACGAGTCTCCCGACACTTCTGTTTCTTCCGGGGAAATTTTTGTCCGAGAAAAATCTTT 358
Query 414 AACCGAACCATCCTCATCCAACTGTGGTAATAAGAACAAAAGACTAATCACGAAACTAGT 473
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 AACCGAACCATCCTCTTCTAACTGTGGTAATAAGAACAAAAGACTTATCACGAAACTAGT 418
Query 474 GTACCCATTTGGATTGGTGAAACCAGGTGGTCGAGAAAATGATGTAACCCTAAATGATAT 533
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTATCCATTTGGATTGGTGAAACCAGGTGGTCGAGAAAATGATGTAACCCTAAATGATAT 478
Query 534 CAACGAGAGAATTTTGATGGCTCCATCTCGACC-GATTCGACATCCGGTAGGAGACTTTG 592
|||||||||||||||||||||||| |||||||| | || |||||||||| ||||||||||
Sbjct 479 CAACGAGAGAATTTTGATGGCTCCGTCTCGACCAG-TTAGACATCCGGTCGGAGACTTTG 537
Query 593 CCTCTCGACCATGTGTCTCTGGCCGTGGACCGGGCCTCTCCGGAAAAGCTGTGGTGGCTC 652
|||||||||||| ||||||||| | ||||| |||||||||||||| || ||||||||||
Sbjct 538 TCTCTCGACCATGCGTCTCTGGCAGCGGACCTGGCCTCTCCGGAAAGGCCGTGGTGGCTC 597
Query 653 TTACTAAGATCCAAACACAAGGGAGGGGTACAATTACTATAATCAGAACTAAGGGGTAAA 712
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 TTACTAAGATCCAAACACAAGGGAGGGGTACAATTACCATAATCAGAACTAAGGGGTAAA 657
Query 713 CTGTGTTATATTGGTAATTAGTTGGGGCTGTTATATATGTGTAACATAAATGAGGTTTTA 772
|||||| |||||||||||||||||||| |||||| |||||| |||||||| | ||||
Sbjct 658 CTGTGTAATATTGGTAATTAGTTGGGGATGTTAT----GTGTAATATAAATGACGCTTTA 713
Query 773 GAAAGCTAAAGTGATCAT-TGGCTATGAGAGAAACTTTCAACTTTTGTATAGAAAAA--T 829
|||||| |||||||||| || ||||||||||||||||||||||| ||||||||||| |
Sbjct 714 GAAAGCCAAAGTGATCAACTG-CTATGAGAGAAACTTTCAACTTTCGTATAGAAAAAAGT 772
Query 830 CAGGCGAGGTAAATTTTGAAGATCAATGTTGTACAATATCCGGTGGATCATTCTAATGAG 889
||||||||||||||||||| | | |||||||||||||||||||| | ||||| |||||
Sbjct 773 TAGGCGAGGTAAATTTTGAA-A--A-TGTTGTACAATATCCGGTGGGTTATTCTTATGAG 828
Query 890 AATTGTTTTATTATCTT 906
||| ||| |||||||||
Sbjct 829 AATAGTTATATTATCTT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5