BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02010.1 Length=1791 Score E Sequences producing significant alignments: (Bits) Value Ahg484123 jgi|Araly1|484123|fgenesh2_kg.5__115__AT2G02010.1 2638 0.0 > Ahg484123 jgi|Araly1|484123|fgenesh2_kg.5__115__AT2G02010.1 Length=1763 Score = 2638 bits (1428), Expect = 0.0 Identities = 1665/1779 (94%), Gaps = 17/1779 (1%) Strand=Plus/Plus Query 4 CATTCTTCTTCAACTACAAAACAAAAACACTACTACACATTCTTTCCTCTTGTTCATTTC 63 ||||||||||||||||||||||||||| || | |||||||||| || ||||||||||||| Sbjct 1 CATTCTTCTTCAACTACAAAACAAAAA-AC-ATTACACATTCTGTCTTCTTGTTCATTTC 58 Query 64 AAACCCAAAAATCAAAGTTCGAAGTTGAAAGAAGACATGGTTTTGTCTAAGACAGTTTCC 123 ||| |||||||||||||||| || ||| || | ||||||||||||||||||| ||| Sbjct 59 AAAACCAAAAATCAAAGTTC-AA----AAA-AAAAGATGGTTTTGTCTAAGACAGCTTCG 112 Query 124 GAATCTGATGTCTCAATCCATTCAACTTTTGCTTCTCGTTACGTCCGCAACTCTCTTCCA 183 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 113 GAATCCGATGTCTCAATCCATTCAACTTTTGCTTCTCGTTACGTCCGGAACTCTCTTCCA 172 Query 184 CGATTCGAAATGCCTGAGAACTCAATCCCAAAAGAAGCAGCTTACCAAATCATCAACGAC 243 |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 173 CGATTCGAAATGCCTGAGAATTCAATCCCAAAGGAAGCAGCGTACCAAATCATCAACGAC 232 Query 244 GAGCTAATGCTCGATGGTAACCCAAGGCTGAACCTAGCTTCCTTCGTGACCACATGGATG 303 ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| Sbjct 233 GAGCTAATGCTCGATGGTAACCCGAGGCTGAACCTAGCCTCCTTTGTGACCACATGGATG 292 Query 304 GAGCCAGAATGTGACAAGCTCATGATGGAGTCCATCAACAAGAACTACGTCGACATGGAC 363 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 GAGCCAGAGTGTGACAAGCTCATGATGGAGTCCATCAACAAGAACTACGTCGACATGGAC 352 Query 364 GAGTACCCTGTCACCACTGAGCTTCAGAACCGATGTGTTAACATGATAGCACGTCTCTTC 423 |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 353 GAGTACCCCGTCACCACTGAGCTTCAGAACCGATGTGTCAACATGATCGCGCGTCTCTTC 412 Query 424 AACGCGCCGCTTGGTGACGGTGAAGCTGCCGTTGGTGTTGGCACCGTCGGATCGTCGGAG 483 ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| Sbjct 413 AACGCGCCGCTTGGTGATGGTGAAGCTGCCGTGGGTGTTGGCACCGTTGGATCGTCAGAG 472 Query 484 GCGATTATGTTGGCCGGTTTGGCTTTTAAGAGACAATGGCAGAATAAGCGTAAGGCCCAA 543 |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 473 GCGATTATGTTGGCGGGTTTGGCTTTCAAGAGACAGTGGCAGAATAAGCGTAAGGCCCAA 532 Query 544 GGGCTTCCTTATGATAAGCCCAATATCGTAACCGGTGCTAATGTCCAGGTTTGCTGGGAG 603 ||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||| Sbjct 533 GGGCTTCCTTATGATAAGCCCAACATTGTAACCGGAGCCAATGTCCAGGTTTGCTGGGAG 592 Query 604 AAATTCGCAAGGTATTTCGAAGTGGAGCTTAAGGAAGTGAACCTAAGAGAAGACTATTAC 663 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 593 AAATTCGCAAGGTATTTCGAAGTGGAGCTTAAGGAAGTGAATCTAAGAGAAGATTATTAC 652 Query 664 GTGATGGACCCTGTAAAGGCGGTCGAAATGGTAGACGAAAACACAATTTGTGTCGCTGCC 723 |||||||||||||||||||||||||||||||| || || |||||||| || ||||| ||| Sbjct 653 GTGATGGACCCTGTAAAGGCGGTCGAAATGGTCGATGAGAACACAATCTGCGTCGCGGCC 712 Query 724 ATCCTCGGTTCAACGTTAACCGGTGAATTCGAAGACGTTAAGCTCCTCAACGACCTCCTT 783 ||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 713 ATCCTCGGTTCGACACTAACCGGTGAATTCGAAGATGTTAAGCTCCTCAACGACCTCCTT 772 Query 784 GTCGAGAAAAACAAGCAAACCGGATGGGACACGCCAATACACGTGGACGCAGCGAGTGGT 843 ||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||| Sbjct 773 GTCGAGAAAAATAAGCAAACCGGATGGGACACGCCGATCCACGTTGACGCAGCAAGTGGT 832 Query 844 GGGTTTATTGCTCCGTTCTTGTATCCGGAGCTGGAGTGGGATTTCCGGCTACCGTTGGTT 903 |||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||||| Sbjct 833 GGGTTTATTGCTCCCTTCTTGTACCCGGAGTTGGAATGGGATTTCCGGCTACCGTTGGTT 892 Query 904 AAGAGTATTAATGTGAGTGGTCACAAATACGGTTTGGTTTACGCCGGTATTGGTTGGGTT 963 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 893 AAGAGTATTAATGTGAGTGGTCACAAATACGGTTTGGTATACGCCGGTATCGGTTGGGTT 952 Query 964 GTATGGAGAACCAAAACCGATTTGCCTGATGAACTTATCTTCCATATCAATTATCTTGGC 1023 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 953 GTATGGAGAACCAAAACCGATTTGCCTGATGAACTTATTTTCCATATCAATTATCTTGGC 1012 Query 1024 GCTGATCAACCAACCTTTACACTCAACTTCTCCAAAGGTTCAAGTCAAGTGATTGCTCAG 1083 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1013 GCTGATCAACCAACCTTCACACTTAACTTCTCCAAAGGTTCAAGTCAAGTGATTGCTCAG 1072 Query 1084 TACTACCAGCTGATTCGTCTTGGATTCGAGGGTTATCGCAATGTGATGGATAATTGTCGG 1143 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1073 TACTACCAGCTGATTCGTCTTGGATTCGAGGGATATCGCAATGTGATGGATAATTGTCGG 1132 Query 1144 GAAAACATGATGGTACTAAGACAAGGATTAGAGAAAACGGGACGTTTTAAAATCGTCTCC 1203 |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1133 GAAAACATGATGGTGCTAAGACAAGGATTAGAGAAAACGGGACGTTTTAACATTGTCTCT 1192 Query 1204 AAAGAAAACGGTGTTCCGTTAGTGGCGTTTTCTCTCAAAGATAGTAGCCGCCACAACGAG 1263 |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1193 AAAGAAAATGGTGTTCCATTAGTGGCGTTTTCTCTCAAAGACAGTAGCCGCCACAACGAG 1252 Query 1264 TTCGAGGTGGCCCATACACTCCGTCGCTTCGGCTGGATCGTTCCGGCCTACACGATGCCT 1323 |||||||| ||| | || ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1253 TTCGAGGTAGCCGAAACGCTCCGCCGCTTTGGCTGGATCGTTCCGGCCTACACGATGCCT 1312 Query 1324 GCGGATGCGCAGCATGTCACTGTCCTTCGAGTTGTTATCCGAGAAGATTTCTCTCGAACC 1383 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1313 GCGGATGCGCAACATGTCACTGTCCTACGAGTTGTTATCCGAGAAGATTTCTCTAGAACC 1372 Query 1384 TTAGCCGAGAGATTGGTAGCTGATTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCG 1443 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1373 TTAGCCGAGAGATTGGTAGCCGATTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCC 1432 Query 1444 GCGAGGGTTCACGCCAAGATGGCTAATGGAAAAGTTAACGGTGTTAAGAAGACGCCAGAG 1503 |||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1433 GCGAGGATTCACGCCAAGATGGCTAATGGAAAAGTTAATGGCGTTAAGAAGACGCCAGAG 1492 Query 1504 GAGACGCAGAGAGAAGTCACGGCCTACTGGAAGAAGTTGTTGGAGACTAAGAAGACCAAC 1563 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1493 GAGACGCAGAGAGAAGTCACGTCCTACTGGAAGAAGTTGTTGGAGACTAAGAAGACCAAC 1552 Query 1564 AAGAACACAATTTGCTAATAAGATTATTTTATAAACTAATATTATTATTTGTTTTGTCCT 1623 |||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||| Sbjct 1553 AAGAACACAATTTGCTGATAAGATTATTTAATAAACTATTATTGTTATTTGTTTTGTCCT 1612 Query 1624 TAATTGCGCTCCATAATTATGGACctttttctttctttgctgtttggattattttttgtt 1683 ||||| |||||||| || ||||||||||||||| | ||||||||||||||| ||| || Sbjct 1613 TAATTACGCTCCAT--TT--GGACCTTTTTCTTTCAT-GCTGTTTGGATTATTATTT-TT 1666 Query 1684 tttctttttgttaagttttgggatttgATATTGCTGATGGAGAGTGATTTTTAATGGATA 1743 | | |||||| |||||||| |||||||||||||||||| |||||||||||| |||| | Sbjct 1667 TAT-TTTTTG--AAGTTTTGTGATTTGATATTGCTGATGAAGAGTGATTTTTTATGGGTT 1723 Query 1744 TACACTAAATCAATGAAAAatatatatatatatatTTTT 1782 || ||||||| ||||||| |||||||||||||||||||| Sbjct 1724 TATACTAAATAAATGAAATATATATATATATATATTTTT 1762 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67229282425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5