BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02010.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484123 jgi|Araly1|484123|fgenesh2_kg.5__115__AT2G02010.1 2638 0.0
> Ahg484123 jgi|Araly1|484123|fgenesh2_kg.5__115__AT2G02010.1
Length=1763
Score = 2638 bits (1428), Expect = 0.0
Identities = 1665/1779 (94%), Gaps = 17/1779 (1%)
Strand=Plus/Plus
Query 4 CATTCTTCTTCAACTACAAAACAAAAACACTACTACACATTCTTTCCTCTTGTTCATTTC 63
||||||||||||||||||||||||||| || | |||||||||| || |||||||||||||
Sbjct 1 CATTCTTCTTCAACTACAAAACAAAAA-AC-ATTACACATTCTGTCTTCTTGTTCATTTC 58
Query 64 AAACCCAAAAATCAAAGTTCGAAGTTGAAAGAAGACATGGTTTTGTCTAAGACAGTTTCC 123
||| |||||||||||||||| || ||| || | ||||||||||||||||||| |||
Sbjct 59 AAAACCAAAAATCAAAGTTC-AA----AAA-AAAAGATGGTTTTGTCTAAGACAGCTTCG 112
Query 124 GAATCTGATGTCTCAATCCATTCAACTTTTGCTTCTCGTTACGTCCGCAACTCTCTTCCA 183
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 113 GAATCCGATGTCTCAATCCATTCAACTTTTGCTTCTCGTTACGTCCGGAACTCTCTTCCA 172
Query 184 CGATTCGAAATGCCTGAGAACTCAATCCCAAAAGAAGCAGCTTACCAAATCATCAACGAC 243
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 173 CGATTCGAAATGCCTGAGAATTCAATCCCAAAGGAAGCAGCGTACCAAATCATCAACGAC 232
Query 244 GAGCTAATGCTCGATGGTAACCCAAGGCTGAACCTAGCTTCCTTCGTGACCACATGGATG 303
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 233 GAGCTAATGCTCGATGGTAACCCGAGGCTGAACCTAGCCTCCTTTGTGACCACATGGATG 292
Query 304 GAGCCAGAATGTGACAAGCTCATGATGGAGTCCATCAACAAGAACTACGTCGACATGGAC 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GAGCCAGAGTGTGACAAGCTCATGATGGAGTCCATCAACAAGAACTACGTCGACATGGAC 352
Query 364 GAGTACCCTGTCACCACTGAGCTTCAGAACCGATGTGTTAACATGATAGCACGTCTCTTC 423
|||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 353 GAGTACCCCGTCACCACTGAGCTTCAGAACCGATGTGTCAACATGATCGCGCGTCTCTTC 412
Query 424 AACGCGCCGCTTGGTGACGGTGAAGCTGCCGTTGGTGTTGGCACCGTCGGATCGTCGGAG 483
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct 413 AACGCGCCGCTTGGTGATGGTGAAGCTGCCGTGGGTGTTGGCACCGTTGGATCGTCAGAG 472
Query 484 GCGATTATGTTGGCCGGTTTGGCTTTTAAGAGACAATGGCAGAATAAGCGTAAGGCCCAA 543
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 473 GCGATTATGTTGGCGGGTTTGGCTTTCAAGAGACAGTGGCAGAATAAGCGTAAGGCCCAA 532
Query 544 GGGCTTCCTTATGATAAGCCCAATATCGTAACCGGTGCTAATGTCCAGGTTTGCTGGGAG 603
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 533 GGGCTTCCTTATGATAAGCCCAACATTGTAACCGGAGCCAATGTCCAGGTTTGCTGGGAG 592
Query 604 AAATTCGCAAGGTATTTCGAAGTGGAGCTTAAGGAAGTGAACCTAAGAGAAGACTATTAC 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 593 AAATTCGCAAGGTATTTCGAAGTGGAGCTTAAGGAAGTGAATCTAAGAGAAGATTATTAC 652
Query 664 GTGATGGACCCTGTAAAGGCGGTCGAAATGGTAGACGAAAACACAATTTGTGTCGCTGCC 723
|||||||||||||||||||||||||||||||| || || |||||||| || ||||| |||
Sbjct 653 GTGATGGACCCTGTAAAGGCGGTCGAAATGGTCGATGAGAACACAATCTGCGTCGCGGCC 712
Query 724 ATCCTCGGTTCAACGTTAACCGGTGAATTCGAAGACGTTAAGCTCCTCAACGACCTCCTT 783
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 713 ATCCTCGGTTCGACACTAACCGGTGAATTCGAAGATGTTAAGCTCCTCAACGACCTCCTT 772
Query 784 GTCGAGAAAAACAAGCAAACCGGATGGGACACGCCAATACACGTGGACGCAGCGAGTGGT 843
||||||||||| ||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct 773 GTCGAGAAAAATAAGCAAACCGGATGGGACACGCCGATCCACGTTGACGCAGCAAGTGGT 832
Query 844 GGGTTTATTGCTCCGTTCTTGTATCCGGAGCTGGAGTGGGATTTCCGGCTACCGTTGGTT 903
|||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 833 GGGTTTATTGCTCCCTTCTTGTACCCGGAGTTGGAATGGGATTTCCGGCTACCGTTGGTT 892
Query 904 AAGAGTATTAATGTGAGTGGTCACAAATACGGTTTGGTTTACGCCGGTATTGGTTGGGTT 963
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 893 AAGAGTATTAATGTGAGTGGTCACAAATACGGTTTGGTATACGCCGGTATCGGTTGGGTT 952
Query 964 GTATGGAGAACCAAAACCGATTTGCCTGATGAACTTATCTTCCATATCAATTATCTTGGC 1023
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 953 GTATGGAGAACCAAAACCGATTTGCCTGATGAACTTATTTTCCATATCAATTATCTTGGC 1012
Query 1024 GCTGATCAACCAACCTTTACACTCAACTTCTCCAAAGGTTCAAGTCAAGTGATTGCTCAG 1083
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1013 GCTGATCAACCAACCTTCACACTTAACTTCTCCAAAGGTTCAAGTCAAGTGATTGCTCAG 1072
Query 1084 TACTACCAGCTGATTCGTCTTGGATTCGAGGGTTATCGCAATGTGATGGATAATTGTCGG 1143
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1073 TACTACCAGCTGATTCGTCTTGGATTCGAGGGATATCGCAATGTGATGGATAATTGTCGG 1132
Query 1144 GAAAACATGATGGTACTAAGACAAGGATTAGAGAAAACGGGACGTTTTAAAATCGTCTCC 1203
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1133 GAAAACATGATGGTGCTAAGACAAGGATTAGAGAAAACGGGACGTTTTAACATTGTCTCT 1192
Query 1204 AAAGAAAACGGTGTTCCGTTAGTGGCGTTTTCTCTCAAAGATAGTAGCCGCCACAACGAG 1263
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1193 AAAGAAAATGGTGTTCCATTAGTGGCGTTTTCTCTCAAAGACAGTAGCCGCCACAACGAG 1252
Query 1264 TTCGAGGTGGCCCATACACTCCGTCGCTTCGGCTGGATCGTTCCGGCCTACACGATGCCT 1323
|||||||| ||| | || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1253 TTCGAGGTAGCCGAAACGCTCCGCCGCTTTGGCTGGATCGTTCCGGCCTACACGATGCCT 1312
Query 1324 GCGGATGCGCAGCATGTCACTGTCCTTCGAGTTGTTATCCGAGAAGATTTCTCTCGAACC 1383
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1313 GCGGATGCGCAACATGTCACTGTCCTACGAGTTGTTATCCGAGAAGATTTCTCTAGAACC 1372
Query 1384 TTAGCCGAGAGATTGGTAGCTGATTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCG 1443
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TTAGCCGAGAGATTGGTAGCCGATTTCGAGAAGGTTCTACACGAGCTCGATACGCTTCCC 1432
Query 1444 GCGAGGGTTCACGCCAAGATGGCTAATGGAAAAGTTAACGGTGTTAAGAAGACGCCAGAG 1503
|||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1433 GCGAGGATTCACGCCAAGATGGCTAATGGAAAAGTTAATGGCGTTAAGAAGACGCCAGAG 1492
Query 1504 GAGACGCAGAGAGAAGTCACGGCCTACTGGAAGAAGTTGTTGGAGACTAAGAAGACCAAC 1563
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GAGACGCAGAGAGAAGTCACGTCCTACTGGAAGAAGTTGTTGGAGACTAAGAAGACCAAC 1552
Query 1564 AAGAACACAATTTGCTAATAAGATTATTTTATAAACTAATATTATTATTTGTTTTGTCCT 1623
|||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 1553 AAGAACACAATTTGCTGATAAGATTATTTAATAAACTATTATTGTTATTTGTTTTGTCCT 1612
Query 1624 TAATTGCGCTCCATAATTATGGACctttttctttctttgctgtttggattattttttgtt 1683
||||| |||||||| || ||||||||||||||| | ||||||||||||||| ||| ||
Sbjct 1613 TAATTACGCTCCAT--TT--GGACCTTTTTCTTTCAT-GCTGTTTGGATTATTATTT-TT 1666
Query 1684 tttctttttgttaagttttgggatttgATATTGCTGATGGAGAGTGATTTTTAATGGATA 1743
| | |||||| |||||||| |||||||||||||||||| |||||||||||| |||| |
Sbjct 1667 TAT-TTTTTG--AAGTTTTGTGATTTGATATTGCTGATGAAGAGTGATTTTTTATGGGTT 1723
Query 1744 TACACTAAATCAATGAAAAatatatatatatatatTTTT 1782
|| ||||||| ||||||| ||||||||||||||||||||
Sbjct 1724 TATACTAAATAAATGAAATATATATATATATATATTTTT 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5