BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02020.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935936 jgi|Araly1|935936|scaffold_500127.1 2394 0.0
Ahg475124 jgi|Araly1|475124|fgenesh2_kg.2__254__AT1G62200.1 743 0.0
> Ahg935936 jgi|Araly1|935936|scaffold_500127.1
Length=1778
Score = 2394 bits (1296), Expect = 0.0
Identities = 1583/1715 (92%), Gaps = 45/1715 (3%)
Strand=Plus/Plus
Query 2 AGGAGAAAGT-AAAAAATGGCTTCCATTGATGAAGAAAGGTCACTTCTTGAAGTTGAAGA 60
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 6 AGGAGAAAGTAAAAAAATGGGTTCCATTGATGAAGAAAGGTCACTTC------TTGAAG- 58
Query 61 ATCTCTTATACAGGAAGAAGTAAAATTATATGCTGAAGATGGTTCAATAGATATTCATGG 120
| | |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 59 ------T-T----GAAGAAGTGAAATTGTATGCTGAAGATGGTTCAATAGATATTCATGG 107
Query 121 AAACCCACCATTGAAGCAGACAACAGGAAACTGGAAAGCTTGTCCATTCATTTTTGCAAA 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 108 AAATCCACCATTGAAGCAGACAACAGGAAACTGGAAAGCTTGTCCATTCATTTTTGCTAA 167
Query 181 CGAATGCTGCGAACGGTTGGCTTATTATGGAATTGCCAAGAATCTCATCACGTACTTCAC 240
||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 168 CGAATGCTGTGAACGGTTGGCTTATTATGGTATTGCCAAGAATCTAATCACTTACTTCAC 227
Query 241 AAATGAATTGCATGAGACTAATGTTTCTGCTGCTAGACACGTCATGACATGGCAAGGAAC 300
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 228 CAATGAATTGCATGAGACTAATGTTTCTGCTGCTAGACATGTTATGACATGGCAAGGGAC 287
Query 301 ATGTTACATCACTCCTCTTATTGGAGCTTTAATAGCTGATGCTTACTGGGGAAGATATTG 360
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 288 ATGTTATATCACTCCTCTTATTGGAGCTTTAATAGCTGATGCTTATTGGGGACGATATTG 347
Query 361 GACTATTGCTTGTTTCTCTGCCATTTATTTCACCGGAATGGTTGCATTGACACTCTCAGC 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 348 GACTATTGCTTGTTTCTCTGCCATTTATTTCACTGGAATGGTTGCATTGACACTATCAGC 407
Query 421 TTCAGTTCCGGGTCTT-AAGCCAGCGGAATGCATTGGCTCTCTATGTCCACCAGCAACAA 479
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 408 TTCAGTTCCGGGT-TTGAAGCCAGCGGAATGTATTGGCTCTCTATGTCCACCAGCAACAA 466
Query 480 TGGTTCAGTCTACGGTTTTATTTTCAGGGCTTTACCTTATCGCTCTTGGCACTGGAGGAA 539
||||||||||||| |||||||||||||| ||||||||||| || ||||| ||||| ||||
Sbjct 467 TGGTTCAGTCTACCGTTTTATTTTCAGGTCTTTACCTTATAGCACTTGGGACTGGTGGAA 526
Query 540 TCAAACCATGTGTCTCATCCTTTGGTGCTGATCAGTTTGATAAGACCGATCCAAGCGAAC 599
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TCAAACCATGTGTTTCATCTTTTGGTGCTGATCAGTTTGATAAGACCGATCCAAGCGAAC 586
Query 600 GAGTCAGAAAAGCTTCTTTCTTTAACTGGTTTTACTTCACTATCAACATTGGTGCTTTTG 659
|||| ||||||||||| |||||||||||||||||||| || |||||||||||||| ||||
Sbjct 587 GAGTGAGAAAAGCTTCGTTCTTTAACTGGTTTTACTTTACCATCAACATTGGTGCGTTTG 646
Query 660 TTTCATCTACTGTTCTAGTTTGGATTCAAGAGAATTATGGATGGGAATTAGGATTCTTGA 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 647 TTTCATCTACTGTTCTAGTTTGGATTCAAGAGAATTGTGGATGGGAATTAGGATTCTTGA 706
Query 720 TACCTACCGTGTTCATGGGACTTGCTACTATGAGTTTCTTCTTTGGCACGCCGCTTTATA 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 707 TACCTACCGTGTTCATGGGACTTGCTACTGTGAGTTTCTTCTTTGGCACGCCGCTTTATA 766
Query 780 GATTTCAGAAACCGAGAGGTAGCCCGATTACTAGCGTCTGCCAAGTTCTTGTAGCCGCAT 839
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 767 GATTTCAGAAACCGAGAGGGAGCCCCATTACTAGAGTCTGCCAAGTTCTTGTAGCTGCAT 826
Query 840 ACCGTAAATCGAATCTCAAGGTCCCTGAAGACT-C---------CAC--GGACG-A-AGG 885
|||| |||| | |||||||| |||||||||||| | ||| ||||| | |||
Sbjct 827 ACCGCAAATGGTATCTCAAGCTCCCTGAAGACTGCAAGATAGAGCACACGGACGGAGAGG 886
Query 886 AG-A-TGCAAACACTAACC----C-GTGGAAGCTATGTACCGTGACTCAAGTCGAAGAAG 938
| | | | ||| || || | ||||||||| |||||||||||||||||||||||||
Sbjct 887 CGGAATCCGAACCCTTTCCGGATCCGTGGAAGCTCTGTACCGTGACTCAAGTCGAAGAAG 946
Query 939 TTAAGATTCTGTTACGTTTGGTCCCCATTTGGGCCTCAGGAATCATCTTCTCAGTTCTCC 998
|||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 947 TTAAGATTCTGTTACGTTTGTTCCCCATTTGGGCCTCGGGCATCATCTTCTCAGTTCTCC 1006
Query 999 ATTCACAGATTTACACTCTCTTTGTTCAACAAGGACGGTGCATGAAACGAACCATCGGCT 1058
| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1007 ACTCACAGATTTACACGCTCTTTGTTCAACAAGGACGGTCCATGAAACGAACCATCGGCT 1066
Query 1059 TATTCGAAATCCCTCCCGCAACTCTCGGGATGTTCGACACTGCAAGTGTTCTCATATCTG 1118
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CATTCGAAATCCCTCCAGCTACTCTCGGGATGTTCGACACTGCAAGTGTTCTCATATCTG 1126
Query 1119 TCCCAATCTATGACCGCGTCATCGTTCCCTTAGTGAGACGGTTCACAGGCTTAGCTAAAG 1178
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1127 TCCCAATCTATGACCGCATCATCGTTCCCTTTGTGAGACGGTTCACAGGCTTAGCGAAAG 1186
Query 1179 GATTCACCGAGCTACAAAGAATGGGGATTGGTCTTTTTGTCTCTGTTTTGAGCTTGACAT 1238
||||||| || |||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 1187 GATTCACTGATCTACAACGAATGGGGATTGGACTCTTTGTCTCTGTTTTGAGCTTGACAT 1246
Query 1239 TTGCAGCTATCGTTGAGACGGTTCGGTTACAGTTAGCTAGAGATCTTGATCTAGTGGAAA 1298
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1247 TTGCAGCTATCGTTGAGACGGTTCGGTTACAGTTAGCCCGAGATCTTGATCTAGTGGAAA 1306
Query 1299 GTGGAGACATTGTTCCATTAAACATCTTTTGGCAAATCCCTCAGTACTTTTTAATGGGCA 1358
||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1307 GTGGAGACACTGTTCCATTAACCATCTTTTGGCAAATCCCTCAGTACTTTTTTATGGGCA 1366
Query 1359 CTGCTGGAGTTTTCTTCTTTGTTGGGAGGATTGAGTTTTTCTATGAGCAATCTCCAGATT 1418
||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||
Sbjct 1367 CTGCTGGAGTTTTCTTCTTCGTTGGTCGGATCGAGTTTTTCTATGAGCAGTCTCCAGATT 1426
Query 1419 CAATGAGAAGCTTGTGTAGTGCTTGGGCTCTTCTCACTACTACACTAGGAAACTACTTGA 1478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1427 CAATGAGAAGCTTGTGTAGTGCTTGGGCTCTTCTCACTACCACACTAGGAAACTACTTGA 1486
Query 1479 GCTCGTTGATCATTACCCTTGTGGCGTATTTGAGCGGAAAAGATTGTTGGATTCCTTCAG 1538
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1487 GCTCGTTGATCATTACCCTTGTGGCGTATTTGAGCGGTAAAGATTGTTGGAT-CCTTCAG 1545
Query 1539 ACAACATTAACAATGGACATCTTGATTACTTCTTCTGGCTTTTGGTCAGTCTTGGATCTG 1598
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||
Sbjct 1546 ACAACATTAACAATGGACATCTTGACTACTTCTTCTGGCTTTTGGTCTGTCTTGGATGTG 1605
Query 1599 TTAACATACCTGTTTTTGTCTTCTTCTCTGTGAAATATACTCATATGAAGGTTTGATCTC 1658
|||||||||| |||||||||||||||||||| ||||| ||||| | ||||| ||||||||
Sbjct 1606 TTAACATACCCGTTTTTGTCTTCTTCTCTGTCAAATACACTCACAAGAAGGCTTGATCTC 1665
Query 1659 TTCTTCTGGCTCTTGTGTGTACTTTCAAAAT-TGt 1692
|||||||| |||||||||||||||||||||| |||
Sbjct 1666 TTCTTCTG-CTCTTGTGTGTACTTTCAAAATGTGT 1699
> Ahg475124 jgi|Araly1|475124|fgenesh2_kg.2__254__AT1G62200.1
Length=1839
Score = 743 bits (402), Expect = 0.0
Identities = 670/796 (84%), Gaps = 31/796 (4%)
Strand=Plus/Plus
Query 92 GCTGAAGATGGTTCAATAGATATTCATGGAAACCCACCATTGAAGCAGACAACAGGAAAC 151
|||||||||||||| | || ||| ||||||||||||||| |||| ||| ||| |||||
Sbjct 103 GCTGAAGATGGTTCTGTTGACATTTATGGAAACCCACCATCGAAGAAGAAAACTGGAAAT 162
Query 152 TGGAAAGCTTGTCCATTCATTTTTGCAAACGAATGCTGCGA-ACGGTTGGCTTATTATGG 210
|||||||||||||| || ||| ||| ||||||||| || || | | | ||||| |||||
Sbjct 163 TGGAAAGCTTGTCCCTTTATTCTTGGAAACGAATGTTGTGAGA-GACTAGCTTACTATGG 221
Query 211 AATTGCCAAGAATCTCATCACGTACTT-CACAAATGAATTGCATGAGACTAATGTTTCTG 269
||||||||||||||| ||||| || || ||||| |||||| || ||| | ||||||||||
Sbjct 222 AATTGCCAAGAATCTAATCACTTA-TTACACAAGTGAATTACACGAGTCCAATGTTTCTG 280
Query 270 CTGCTAGAC-ACGTCATGACATGGCAAGGAACATGTTACATCACTCCTCTTATTGGAGCT 328
| ||||| | ||||||||| ||||||||||| || || ||||| ||||| |||||||||
Sbjct 281 CAGCTAG-CGACGTCATGATTTGGCAAGGAACTTGCTATATCACACCTCTAATTGGAGCT 339
Query 329 -TTAATAGCTGATGCTTACTGGGGAAGATATTGGACTATTGCTTGTTTCTCTGCCATTTA 387
|| ||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||
Sbjct 340 GTT-ATAGCTGATTCTTACTGGGGAAGATACTGGACTATTGCTTCTTTCTCTGCTATTTA 398
Query 388 TTTCACCGGAATGG--TTGCATTGACACTCTCAGCTTCAGTTCCGGGTCTT-AAGCCAGC 444
|||| ||||||| ||| ||||||||||| ||||||||||||||| || ||||||||
Sbjct 399 TTTCTTTGGAATGGCTTTG--TTGACACTCTCGGCTTCAGTTCCGGGT-TTAAAGCCAGC 455
Query 445 GGAATGCATTGGC-----T-C---TCTATGTCCACCAGCAACAATGGTTCAGTCTACGGT 495
|||||| ||||| | | |||||| ||||||||||||| |||||||| | ||||
Sbjct 456 GGAATGTGTTGGCTTTGTTGCGGTTCTATGCCCACCAGCAACAACGGTTCAGTATGCGGT 515
Query 496 TTTATTTTCAGGGCTTTACCTTATCGCTCTTGGCACTGGAGGAATCAAACCATGTGTCTC 555
||| |||||||| ||||||||||| || ||||| |||||||| |||||||||||||| ||
Sbjct 516 TTTCTTTTCAGGACTTTACCTTATTGCACTTGGTACTGGAGGTATCAAACCATGTGTTTC 575
Query 556 ATCCTTTGGTGCTGATCAGTTTGATAAGACCGATCCAAGCGAACGAGTCAGAAAAGCTTC 615
||| ||||||||||||||||||||| | || || || || |||||||| |||||||||||
Sbjct 576 ATCTTTTGGTGCTGATCAGTTTGATGATACTGACCCGAGGGAACGAGTTAGAAAAGCTTC 635
Query 616 TTTCTTTAACTGGTTTTACTTCACTATCAACATTGGTGCTTTTGTTTCATCTACTGTT-C 674
|||||||||||||||||||||| |||||||||||||| | ||||| ||||| ||| || |
Sbjct 636 TTTCTTTAACTGGTTTTACTTCTCTATCAACATTGGTTCATTTGTCTCATCCACT-TTGC 694
Query 675 TAGTTTGGATTCAAGAGAAT-TATGGATGGGAATTAGGATTCTTGATACCTACCGTGTTC 733
|||||||| ||||||||||| | || |||| | | || |||||||| || ||||||||
Sbjct 695 TAGTTTGGGTTCAAGAGAATGTCGGG-TGGGGACTCGGTTTCTTGATTCCCACCGTGTTT 753
Query 734 ATGGGA-CTTGCTA-CTATGAGTTTCTTCTTTGGCACGCCGCTTTATAGATTTCAGAAAC 791
|||||| | | ||| | |||||||||| |||| || ||||||||||| ||||||||||
Sbjct 754 ATGGGAGCCT-CTATCGC-GAGTTTCTTCATTGGAACTCCGCTTTATAGGTTTCAGAAAC 811
Query 792 CGAGAGGTAGCCCGATTACTAGCGTCTGCCAAGTTCTTGTAGCCGCATACCGTAAATCGA 851
|| ||||||||||||||||||| || ||||||||||||||||| |||||||| |||| |
Sbjct 812 CGGGAGGTAGCCCGATTACTAGAGTTTGCCAAGTTCTTGTAGCTGCATACCGCAAATGGT 871
Query 852 ATCTCAAGGTCCCTGA 867
||||||| |||||||
Sbjct 872 ATCTCAATCTCCCTGA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5