BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02030.1 Length=1005 Score E Sequences producing significant alignments: (Bits) Value Ahg896150 jgi|Araly1|896150|Al_scaffold_0005_116 1330 0.0 > Ahg896150 jgi|Araly1|896150|Al_scaffold_0005_116 Length=1215 Score = 1330 bits (720), Expect = 0.0 Identities = 866/935 (93%), Gaps = 16/935 (2%) Strand=Plus/Plus Query 72 AAAAGAAATCAAACGAAGAAGAAAAGAGTTTGAGAAGATCCATATACCTAACGAAATCGT 131 ||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||| Sbjct 27 AAAAGAAATCAAACGAAGAAGAAGAGAGTTTGAGAAAATTCATATACCTAACGAAATCGT 86 Query 132 CGAAGAAATCTTGGTGAGGCTGCCGGTGAAATCGCTCACGAGATTTCAAACTGTGTCAAA 191 |||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| || Sbjct 87 CGAAGAAATCATGGTGAGGCTTCCGGTGAAATCGCTCACGAGATTTCAAAGTGTGTCGAA 146 Query 192 ACACTGGAGAACTCTGATCACGTCGAAGTATTTCGGAAAAAGACACATGGCTCTTGAGAA 251 | |||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| Sbjct 147 ATACTGGAGAACTCTGATCACGTCCAAGGATTTCGGGGAAAGACACATGGCTCTTGAGAA 206 Query 252 AAGCAAAGGATGCAAACTCCTTTTTGTTTGTGATGATTTTGTAGATCGTGCAGAGGACAC 311 ||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| Sbjct 207 AAGCAAAGGATGCAAACTCATTTTTGTCTGTGATGATTTTGAAGATCGTGCGGAGGACAC 266 Query 312 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGTTTCTGAGGGAGATGAACAAGC 371 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 267 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGCTTCTGAGGGAGATGAACAAGC 326 Query 372 TTTCGAATTCGAAGGATATAAGGGGTTTCTCGATATTTCCGAGAGCTGTGATGGCCTTGT 431 |||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| | Sbjct 327 TTTCGAATTCCAAGGATTTAATGGGTTTCTGGATATTTCCGAGAGCTGTGATGGCCTTAT 386 Query 432 CTGCTTCTACGACACTACAAGAGCAGTGGAAGTAATGAATCCGGCCACAACAATGTTCAT 491 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 387 CTGCTTCTACGACACTAAAAGAGCAGTGGAAGTTATGAATCCGGCCACAACAATGTTCAT 446 Query 492 AGAACTCCCTCTATCGAGAATCCAACAGCTTTGTATATACAAGCCAAACCCGGAGGTGGA 551 | ||||||||||||||||||| |||| ||||||||||||||| | | || | | Sbjct 447 ACAACTCCCTCTATCGAGAATTCAACGGCTTTGTATATACAA---ATATCCAAAC-T--- 499 Query 552 GCTGGAGCCAGTTCAAGATCCAAATCCTGTTCTAGACCCAGTCATGACATGTTCTCAGAT 611 | |||| |||||||||||||||||||||| ||||||| ||||| ||||||||||| | Sbjct 500 -C-GGAG---GTTCAAGATCCAAATCCTGTTCCAGACCCAATCATGTCATGTTCTCAG-T 553 Query 612 TGGAGTT-GGGAAAGACAGCGTTAGTGGAAGTTATAAACTAGTATGGATGTATAATACTT 670 ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 554 TGGGGTTTGGGAAAGACAGCGTTAATGGAAGTTATAAACTAGTATGGATGTATAATACTT 613 Query 671 CTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGATGGaaaaaaaTGGAGGTTCG 730 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 614 CTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGAGGGAAAAAAATGGAGGTTCG 673 Query 731 TGAATACTACTTCTCTTGATCATCATCAGATCTTGTGCGATCAGAGGCCGGTGTTTGCAA 790 ||||||||| | |||||||||||||| ||||||||| | |||||||||| |||||||||| Sbjct 674 TGAATACTAATACTCTTGATCATCATAAGATCTTGTTCAATCAGAGGCCAGTGTTTGCAA 733 Query 791 ACGGATCACTCTACTGGCTCACGGGAGATGAGGAAGGATATGCAACAACACAAACCAAAC 850 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 734 ACGGATCACTCTACTGGCTCACGGGAGATGAACAAGGATATGCAACAACACAAACCAAAC 793 Query 851 TCATAGTTTTAGAT-TTACACACAGAGATGTTTCAAGTCATCCAAACACCGCCTTTTATT 909 |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| || Sbjct 794 TCATAGTTTTCGATATT-CACACAGAGATGTTTCAAGTCATCCAAACACCGCCTTTTTTT 852 Query 910 ACCCGTGATGCCTCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTATT 969 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 ACCCATGATGCATCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTATC 912 Query 970 TCAGAGTTGAAGAAAGATTGCAAGCAAGAGTTTTG 1004 || ||||||||||||||||||||||| |||||||| Sbjct 913 TCTGAGTTGAAGAAAGATTGCAAGCAGGAGTTTTG 947 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37360458660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5