BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02030.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896150 jgi|Araly1|896150|Al_scaffold_0005_116 1330 0.0
> Ahg896150 jgi|Araly1|896150|Al_scaffold_0005_116
Length=1215
Score = 1330 bits (720), Expect = 0.0
Identities = 866/935 (93%), Gaps = 16/935 (2%)
Strand=Plus/Plus
Query 72 AAAAGAAATCAAACGAAGAAGAAAAGAGTTTGAGAAGATCCATATACCTAACGAAATCGT 131
||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 27 AAAAGAAATCAAACGAAGAAGAAGAGAGTTTGAGAAAATTCATATACCTAACGAAATCGT 86
Query 132 CGAAGAAATCTTGGTGAGGCTGCCGGTGAAATCGCTCACGAGATTTCAAACTGTGTCAAA 191
|||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 87 CGAAGAAATCATGGTGAGGCTTCCGGTGAAATCGCTCACGAGATTTCAAAGTGTGTCGAA 146
Query 192 ACACTGGAGAACTCTGATCACGTCGAAGTATTTCGGAAAAAGACACATGGCTCTTGAGAA 251
| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 147 ATACTGGAGAACTCTGATCACGTCCAAGGATTTCGGGGAAAGACACATGGCTCTTGAGAA 206
Query 252 AAGCAAAGGATGCAAACTCCTTTTTGTTTGTGATGATTTTGTAGATCGTGCAGAGGACAC 311
||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 207 AAGCAAAGGATGCAAACTCATTTTTGTCTGTGATGATTTTGAAGATCGTGCGGAGGACAC 266
Query 312 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGTTTCTGAGGGAGATGAACAAGC 371
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 267 TCTGTTTTTAAAAACAGTTGCCTTGGAGAAGACGTCAGCTTCTGAGGGAGATGAACAAGC 326
Query 372 TTTCGAATTCGAAGGATATAAGGGGTTTCTCGATATTTCCGAGAGCTGTGATGGCCTTGT 431
|||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 327 TTTCGAATTCCAAGGATTTAATGGGTTTCTGGATATTTCCGAGAGCTGTGATGGCCTTAT 386
Query 432 CTGCTTCTACGACACTACAAGAGCAGTGGAAGTAATGAATCCGGCCACAACAATGTTCAT 491
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 387 CTGCTTCTACGACACTAAAAGAGCAGTGGAAGTTATGAATCCGGCCACAACAATGTTCAT 446
Query 492 AGAACTCCCTCTATCGAGAATCCAACAGCTTTGTATATACAAGCCAAACCCGGAGGTGGA 551
| ||||||||||||||||||| |||| ||||||||||||||| | | || | |
Sbjct 447 ACAACTCCCTCTATCGAGAATTCAACGGCTTTGTATATACAA---ATATCCAAAC-T--- 499
Query 552 GCTGGAGCCAGTTCAAGATCCAAATCCTGTTCTAGACCCAGTCATGACATGTTCTCAGAT 611
| |||| |||||||||||||||||||||| ||||||| ||||| ||||||||||| |
Sbjct 500 -C-GGAG---GTTCAAGATCCAAATCCTGTTCCAGACCCAATCATGTCATGTTCTCAG-T 553
Query 612 TGGAGTT-GGGAAAGACAGCGTTAGTGGAAGTTATAAACTAGTATGGATGTATAATACTT 670
||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 554 TGGGGTTTGGGAAAGACAGCGTTAATGGAAGTTATAAACTAGTATGGATGTATAATACTT 613
Query 671 CTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGATGGaaaaaaaTGGAGGTTCG 730
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 614 CTCCTGCTACTCCTCCTACGTGCGAGGTTTTGGATTTAGAGGGAAAAAAATGGAGGTTCG 673
Query 731 TGAATACTACTTCTCTTGATCATCATCAGATCTTGTGCGATCAGAGGCCGGTGTTTGCAA 790
||||||||| | |||||||||||||| ||||||||| | |||||||||| ||||||||||
Sbjct 674 TGAATACTAATACTCTTGATCATCATAAGATCTTGTTCAATCAGAGGCCAGTGTTTGCAA 733
Query 791 ACGGATCACTCTACTGGCTCACGGGAGATGAGGAAGGATATGCAACAACACAAACCAAAC 850
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 734 ACGGATCACTCTACTGGCTCACGGGAGATGAACAAGGATATGCAACAACACAAACCAAAC 793
Query 851 TCATAGTTTTAGAT-TTACACACAGAGATGTTTCAAGTCATCCAAACACCGCCTTTTATT 909
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 794 TCATAGTTTTCGATATT-CACACAGAGATGTTTCAAGTCATCCAAACACCGCCTTTTTTT 852
Query 910 ACCCGTGATGCCTCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTATT 969
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ACCCATGATGCATCTGGTGACAAGATTGGTTTATGCAATCTTGATGGTCGTCTCTGTATC 912
Query 970 TCAGAGTTGAAGAAAGATTGCAAGCAAGAGTTTTG 1004
|| ||||||||||||||||||||||| ||||||||
Sbjct 913 TCTGAGTTGAAGAAAGATTGCAAGCAGGAGTTTTG 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5