BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02040.1
Length=2002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484127 jgi|Araly1|484127|fgenesh2_kg.5__119__AT2G02040.1 3020 0.0
Ahg935936 jgi|Araly1|935936|scaffold_500127.1 588 6e-167
> Ahg484127 jgi|Araly1|484127|fgenesh2_kg.5__119__AT2G02040.1
Length=1977
Score = 3020 bits (1635), Expect = 0.0
Identities = 1886/2004 (94%), Gaps = 30/2004 (1%)
Strand=Plus/Plus
Query 2 AGTCGCCGGGAAAAGTAAAATAAAAAGCCGTCACGTC-TCCGATAAATAATAGAGTATCG 60
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 1 AGTCGCCGGGAAAAGTAAAATAAAAAACCGTCACGTCTTCTGATAAATAATAGAGTATCG 60
Query 61 TTAGATAGGTAGCTTCAACGTAAGGAATCTAAATTGGTTCAGCTCAAAAAACGAAAACGA 120
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 61 ATAGATAGGTAGCTTCAACGTAAGGAATCTAAATTGGTTCTGCTC-AAAAACGAAAACGA 119
Query 121 TGGGTTCCATCGAAGAAGAAGCAAGACCTCTCATCGAAGAAGGTTTAATTTTACAGGAAG 180
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 TGGGTTCCATTGAAGAAGAAGCAAGACCTCTCATCGAAGAAGGTTTAATATTACAGGAAG 179
Query 181 TGAAATTGTATGCTGAAGATGGTTCAGTGGACTTTAATGGAAACCCACCATTGAAGGAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGAAATTGTATGCTGAAGATGGTTCAGTGGACTTTAATGGAAACCCACCATTGAAGGAGA 239
Query 241 AAACAGGAAACTGGAAAGCTTGTCCTTTTATTCTTGGTAATGAATGTTGTGAGAGGCTAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAACAGGAAACTGGAAAGCTTGTCCTTTTATTCTTGGTAATGAATGTTGTGAGAGGCTAG 299
Query 301 CTTACTATGGTATTGCTGGGAAT-TTAATCACTTACCTCACCACTAAGCTTCACCAAGGA 359
||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||
Sbjct 300 CTTACTATGGTATTGCTGGGAATCTTA-TCACTTACCTCACCACTAAGCTACATCAAGGA 358
Query 360 AATGTTTCTGCTGCTACAAACGTTACCACATGGCAAGGGACTTGTTATCTCACTCCTCTC 419
||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 359 AATGTGTCTGCTGCTACAAATGTTACTACATGGCAAGGGACTTGTTATCTTACTCCTCTT 418
Query 420 ATTGGAGCTGTTCTGGCTGATGCTTACTGGGGACGTTACTGGACCATCGCTTGTTTCTCC 479
|||||||||||| |||| ||||||||||||||||| |||||||| || ||||||||||||
Sbjct 419 ATTGGAGCTGTTTTGGCCGATGCTTACTGGGGACGATACTGGACTATTGCTTGTTTCTCC 478
Query 480 GGGATTTATTTCATCGGGATGTCTGCGTTAACTCTTTCAGCTTCAGTTCCGGCATTGAAG 539
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 479 GGGATTTATTTCATCGGGATGTCGGCGTTAACTCTTTCAGCCTCAGTTCCGGCATTGAAG 538
Query 540 CCAGCGGAATGTATTGGTGACTTTTGTCCATCTGCAACGCCAGCTCAGTATGCGATGTTC 599
||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||
Sbjct 539 CCAGCGGAATGTATTGGCGGTTTTTGTCCATCAGCAACGCCAGCTCAATATGCGATGTTC 598
Query 600 TTTGGTGGGCTTTACCTGATCGCTCTTGGAACTGGAGGTATCAAACCGTGTGTCTCATCC 659
||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||||
Sbjct 599 TTTGGCGGGCTTTACCTGATCGCCCTTGGCACTGGAGGTATCAAACCATGCGTCTCATCC 658
Query 660 TTCGGTGCCGATCAGTTTGATGACACGGACTCTCGGGAACGAGTTAGAAAAGCTTCGTTC 719
|| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 659 TTTGGTGCAGATCAGTTTGATGACACGGACTCGCGTGAACGAGTTAGAAAAGCTTCGTTC 718
Query 720 TTTAACTGGTTTTACTTCTCCATCAATATTGGAGCACTTGTGTCATCTAGTCTTCTAGTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTAACTGGTTTTACTTCTCCATCAATATTGGAGCACTTGTGTCATCTAGTCTTCTAGTT 778
Query 780 TGGATTCAAGAGAATCGCGGGTGGGGTTTAGGGTTTGGGATACCAACAGTGTTCATGGGA 839
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 779 TGGATTCAAGAGAATCGCGGGTGGGGTTTAGGATTTGGGATACCAACCGTGTTCATGGGA 838
Query 840 CTAGCCATTGCAAGTTTCTTCTTTGGCACACCTCTTTATAGGTTTCAGAAACCTGGAGGA 899
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 839 CTTGCCATTGCAAGTTTCTTCTTTGGCACACCGCTTTACAGGTTTCAGAAACCTGGAGGA 898
Query 900 AGCCCTATAACTCGGATTTCCCAAGTCGTGGTTGCTTCGTTCCGGAAATCGTCTGTCAAA 959
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 899 AGCCCGATAACTCGGATTTCCCAAGTCGTGGTTGCTTCATTCCGGAAATCATCTGTCAAA 958
Query 960 GTCCCTGAAGACGCCACACTTCTGTATGAAACTCAAGACAAGAACTCTGCTATTGCTGGA 1019
||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 959 CTCCCTGAAGACCCCACGCTTCTGTATGAAACACAAGACAAGAACTCTGCTATTGCTGGA 1018
Query 1020 AGTAGAAAAATCGAGCATACCGATGATTGCCAGTATCTTGACAAAGCCGCTGTTATCTCA 1079
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 AGTAGAAAAATCGAGTATACCGATGATTGCAAGTATCTTGACAAAGCCGCTGTTATCTCA 1078
Query 1080 GAAGAAGAATCGAAATCCGGAGATTATTCCAACTCGTGGAGACTATGCACGGTTACGCAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAAGAAGAATCGAAATCCGGAGATTATTCCAACTCGTGGAGACTATGCACGGTTACGCAA 1138
Query 1140 GTCGAAGAACTCAAGATTCTGATCCGAATGTTCCCAATCTGGGCTTCTGGTATCATTTTC 1199
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1139 GTCGAAGAACTCAAGATTCTGATTCGAATGTTCCCAATCTGGGCTTCCGGTATAATTTTC 1198
Query 1200 TCAGCTGTATACGCACAAATGTCCACAATGTTTGTTCAACAAGGCCGAGCCATGAACTGC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAGCTGTATACGCACAAATGTCCACAATGTTTGTTCAACAAGGCCGAGCCATGAACTGC 1258
Query 1260 AAAATTGGATCATTCCAGCTTCCTCCTGCAGCACTCGGGACATTCGACACAGCAAGCGTC 1319
||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct 1259 AAAATCGGATCGTTCCAGCTTCCTCCAGCAGCACTAGGGACATTCGACACTGCTAGCGTC 1318
Query 1320 ATCATCTGGGTGCCGCTCTACGACCGGTTCATCGTTCCCTTAGCAAGAAAGTTCACAGGA 1379
||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1319 ATCATCTGGGTCCCGCTCTACGACCGGTTCATCATTCCCTTAGCAAGACGGTTCACAGGA 1378
Query 1380 GTAGACAAAGGATTCACTGAGATACAAAGAATGGGAATTGGTCTGTTTGTCTCTGTTCTC 1439
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1379 GTAGACAAAGGATTCACGGAGATACAAAGAATGGGAATCGGTCTTTTTGTCTCTGTTCTC 1438
Query 1440 TGTATGGCAGCTGCAGCTATCGTCGAAATCATCCGTCTCCATATGGCCAACGATCTTGGA 1499
||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 1439 TGTATGGCAGCTGCAGCCATTGTCGAAATCATCCGTCTCCATATGGCCAACGACCTCGGA 1498
Query 1500 TTAGTCGAGTCAGGAGCCCCAGTTCCCATATCCGTCTTGTGGCAGATTCCACAGTACTTC 1559
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1499 TTAGTCGAGTCCGGAGCCCCAGTTCCCATATCCGTCTTATGGCAGATTCCGCAGTACTTC 1558
Query 1560 ATTCTCGGTGCAGCCGAAGTATTCTACTTCATCGGTCAGCTCGAGTTCTTCTACGACCAA 1619
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1559 ATTCTCGGTGCAGCAGAAGTATTCTACTTCATCGGTCAGCTAGAATTCTTCTACGACCAA 1618
Query 1620 TCTCCAGATGCAATGAGAAGCTTGTGCAGTGCCTTGGCTCTTTTGACCAATGCACTTGGT 1679
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||
Sbjct 1619 TCTCCAGATGCAATGAGAAGCTTGTGCAGTGCCTTATCTCTTCTGACCACCGCACTGGGG 1678
Query 1680 AACTACTTGAGCTCGTTGATCCTCACGCTCGTGACTTATTTTACAACAAGAAATGGGCAA 1739
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 1679 AACTACTTGAGCTCGTTGATCCTCACGCTCGTGACTTATTTCACGACAAGAAATGGTCAA 1738
Query 1740 GAAGGTTGGATTTCGGATAATCTCAATTCAGGTCATCTCGATTACTTCTTCTGGCTCTTG 1799
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1739 GAAGGTTGGATATCGGATAATCTCAATTCGGGTCATCTCGATTACTTCTTCTGGCTCTTG 1798
Query 1800 GCTGGTCTTAGCCTTGTGAACATGGCGGTTTACTTCTTCTCTGCTGCTAGGTATAAGCAA 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 GCTGGTCTTAGCCTTGTGAACATGGCGGTTTACTTCTTCTCTGCTGCTAGGTATAAGCAA 1858
Query 1860 AAGAAAGCTTCGTCGTAGTAATGCTGTTATCTATCTACTTTCATTACATACAAAAGTTTG 1919
||||||||||||| |||| | || | || | |||||||||||||||||||||||
Sbjct 1859 AAGAAAGCTTCGT---AGTA-T-CTCT---CT--C--CTTTCATTACATACAAAAGTTTG 1906
Query 1920 TTTCTTTCAACTGTAACTGTCTCTGTATCAATAACAACATTGCTGTGTACTTT-TCCTTT 1978
|||||||||||||||||||||||||||| | |||||||||||| || |||
Sbjct 1907 TTTCTTTCAACTGTAACTGTCTCTGTAT---T---------GCTGTGTACTTTCTC-TTT 1953
Query 1979 CAATTTCAAAAGTTTAAGTCGCAT 2002
||||||||||||||||||||||||
Sbjct 1954 CAATTTCAAAAGTTTAAGTCGCAT 1977
> Ahg935936 jgi|Araly1|935936|scaffold_500127.1
Length=1778
Score = 588 bits (318), Expect = 6e-167
Identities = 654/813 (80%), Gaps = 36/813 (4%)
Strand=Plus/Plus
Query 177 GAAGTGAAATTGTATGCTGAAGATGGTTCAGTGGACT-TTAATGGAAACCCACCATTGAA 235
|||||||||||||||||||||||||||||| | || | || ||||||| |||||||||||
Sbjct 64 GAAGTGAAATTGTATGCTGAAGATGGTTCAATAGA-TATTCATGGAAATCCACCATTGAA 122
Query 236 GGAGAAAACAGGAAACTGGAAAGCTTGTCCTTTTATTCTTGGTAATGAATGTTGTGAGA- 294
| ||| |||||||||||||||||||||||| || ||| ||| ||| ||||| ||||| |
Sbjct 123 GCAGACAACAGGAAACTGGAAAGCTTGTCCATTCATTTTTGCTAACGAATGCTGTGA-AC 181
Query 295 GGCTAGCTTACTATGGTATTGCTGGGAATTTAATCACTTACCTCACCACT-AAGCTTCAC 353
|| | ||||| ||||||||||| |||| ||||||||||| |||||| | || ||
Sbjct 182 GGTTGGCTTATTATGGTATTGCCAAGAATCTAATCACTTACTTCACCAATGAA--TT--G 237
Query 354 CAAG-GA--AATGTTTCTGCTGCTACAAACGTTACCACATGGCAAGGGACTTGTTATCTC 410
|| | || |||||||||||||||| | | |||| |||||||||||||| |||||| ||
Sbjct 238 CATGAGACTAATGTTTCTGCTGCTAGACATGTTATGACATGGCAAGGGACATGTTATATC 297
Query 411 ACTCCTCTCATTGGAGCTGTT-CTGGCTGATGCTTACTGGGGACGTTACTGGACCATCGC 469
|||||||| ||||||||| || | ||||||||||| |||||||| || ||||| || ||
Sbjct 298 ACTCCTCTTATTGGAGCT-TTAATAGCTGATGCTTATTGGGGACGATATTGGACTATTGC 356
Query 470 TTGTTTCTCCGGGATTTATTTCATC-GGGAT-GTCTGCGTTAACTCTTTCAGCTTCAGTT 527
||||||||| | |||||||||| | || || || ||| || || || ||||||||||||
Sbjct 357 TTGTTTCTCTGCCATTTATTTCA-CTGGAATGGT-TGCATTGACACTATCAGCTTCAGTT 414
Query 528 CCGGCATTGAAGCCAGCGGAATGTATTGGTGACT-TTTGTCCATCTGCAACGCCAGCTCA 586
|||| ||||||||||||||||||||||| || | |||||| | ||||| | |||
Sbjct 415 CCGGGTTTGAAGCCAGCGGAATGTATTGG-CTCTCTATGTCCACCAGCAACAATGGTTCA 473
Query 587 GTAT-GCGATGTTCTTTGGTGGGCTTTACCTGATCGCTCTTGGAACTGGAGGTATCAAAC 645
|| | || | || ||| || |||||||| || || ||||| ||||| || |||||||
Sbjct 474 GTCTACCG-TTTTATTTTCAGGTCTTTACCTTATAGCACTTGGGACTGGTGGAATCAAAC 532
Query 646 CGTGTGTCTCATCCTTCGGTGCCGATCAGTTTGATGACACGGACT-CTCGGGAACGAGTT 704
| ||||| ||||| || ||||| |||||||||||| | || || | | | ||||||||
Sbjct 533 CATGTGTTTCATCTTTTGGTGCTGATCAGTTTGATAAGACCGA-TCCAAGCGAACGAGTG 591
Query 705 AGAAAAGCTTCGTTCTTTAACTGGTTTTACTTCT-CCATCAATATTGGAGCACTTGTGTC 763
|||||||||||||||||||||||||||||||| | ||||||| ||||| || |||| ||
Sbjct 592 AGAAAAGCTTCGTTCTTTAACTGGTTTTACTT-TACCATCAACATTGGTGCGTTTGTTTC 650
Query 764 ATCTAGTCTTCTAGTTTGGATTCAAGAGAATCGCGGGTGGGGTTTAGGGTT-TGGGATAC 822
||||| | ||||||||||||||||||||||| | || |||| ||||| || | | ||||
Sbjct 651 ATCTACTGTTCTAGTTTGGATTCAAGAGAATTGTGGATGGGAATTAGGATTCTTG-ATAC 709
Query 823 CAACAGTGTTCATGGGACTAGCCATTGCAAGTTTCTTCTTTGGCACACCTCTTTATAGGT 882
| || |||||||||||||| || | || ||||||||||||||||| || |||||||| |
Sbjct 710 CTACCGTGTTCATGGGACTTGCTACTGTGAGTTTCTTCTTTGGCACGCCGCTTTATAGAT 769
Query 883 TTCAGAAACCTG-GAGGAAGCCCTATAACTCGGATT-TCCCAAGT-CGTGGTTGCTTCGT 939
|||||||||| | |||| ||||| || ||| | | | | |||||| | || | ||| | |
Sbjct 770 TTCAGAAACC-GAGAGGGAGCCCCATTACTAG-AGTCTGCCAAGTTCTTG-TAGCTGCAT 826
Query 940 TCCGGAAATCGTCTGTCAAAG-TCCCTGAAGAC 971
||| |||| || | |||| | |||||||||||
Sbjct 827 ACCGCAAATGGTATCTCAA-GCTCCCTGAAGAC 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75266324120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5