BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02050.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484128 jgi|Araly1|484128|fgenesh2_kg.5__120__AT2G02050.1 911 0.0
> Ahg484128 jgi|Araly1|484128|fgenesh2_kg.5__120__AT2G02050.1
Length=623
Score = 911 bits (493), Expect = 0.0
Identities = 590/633 (93%), Gaps = 22/633 (3%)
Strand=Plus/Plus
Query 13 GAAGAAGAAGAAGAGAGT-ATCGTTGTGAGGTTTGGGGATCGCGAAAATGGAGGTTCCAG 71
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGAAGAAGAAGAGAGTAATCG-T-TGAGGTTTGGGGATCGCGAAAATGGAGGTTCCAG 58
Query 72 GTTCATCGAAGAAGATGATCGCAACGCAAGAAGAGATGTCTGCAGCTAAAATAGCACTTG 131
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 59 GTTCATCGAAGAAGATGATCGCAACGCAAGAAGAGATGTCTGCAGCTAAAATACCACTTG 118
Query 132 GATCTAGAGAT-ATGTGCGCTCATCTCTTGATTCCGCTCAACAAATGTCGTCAGGCTGAG 190
| || |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 GTTCGAGAGATCA-GTGCGCTCATCTCTTGATTCCTCTCAACAAATGTCGTCAGGCTGAG 177
Query 191 TTTTACCTTCCATGGAAATGTGAAGACGAGCGTCACGTTTATGAGAAGTGTGAATACGAG 250
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 TTTTTCCTTCCATGGAAATGTGAAGACGAGCGTCACGTTTACGAGAAGTGTGAATACGAG 237
Query 251 CTTGTTATGGAGAGAATGCTTGCGATGAAGAAGATCCGTGAAGAAGAAGCTTTGGCTAAA 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTGTTATGGAGAGAATGCTTGCGATGAAGAAGATCCGTGAAGAAGAAGCTTTGGCTAAA 297
Query 311 CAGAATAAACTACAAGGAAACGCTGCTGTTCCTCTTATCCCTAAAACTGCTAATGCTTAG 370
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 CAGAATAAACTACAAGGGAACGCCGCTGTTCCTCTTATCCCTAAAACTGCTAATGCTTAG 357
Query 371 --------GATTCGATTCCTTCTCCAATTTGCCGATTCCAGATTCCGGGATTCTCTGGAA 422
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 CCTCCTCCGATTCGATTCCTTCTCCGATTTGCCGATTCCAGATTCCGGGATTCTCTGGAA 417
Query 423 CTGTGAAGATGGTGGGGACTCTGCTTTTCAATCTTTTTCTTCTTGCTAGTGATGAAAAAT 482
||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 CTGTGAAGAAGGTGGGGGCTCTGCTTTTCAATATTTTTCTTCTTGCTAGTGATGAAAAAT 477
Query 483 TGTTGCTACATTTTCAGATGTGAATGTTCAAGATTCTCTATCttttttttttttttGAAC 542
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 478 TGTTGCTACATTTTCAGATGTGAATGTTCAAGATTCTCTATCTTTTTGTTTTT----A-C 532
Query 543 TCTTTTTAACTTGGA-GTGGTTTCCCAAAAAA-TAAGATGCAAAACTCATCTTTTTGTTG 600
|||| |||||||||| ||| |||||||||||| ||||||||||| || || ||||| ||
Sbjct 533 TCTTGTTAACTTGGAAGTG-TTTCCCAAAAAAATAAGATGCAAA-CTAATATTTTTCTTA 590
Query 601 GTTTTCTATCTTTAATCTGTGAGAAATAAAAAA 633
|||||||||||||||| | ||||||| ||||||
Sbjct 591 GTTTTCTATCTTTAATATTTGAGAAAGAAAAAA 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23712454374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5