BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02060.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484129 jgi|Araly1|484129|fgenesh2_kg.5__121__AT2G02060.1 1232 0.0
Ahg471638 jgi|Araly1|471638|fgenesh2_kg.1__1592__AT1G14600.1 327 7e-89
> Ahg484129 jgi|Araly1|484129|fgenesh2_kg.5__121__AT2G02060.1
Length=972
Score = 1232 bits (667), Expect = 0.0
Identities = 896/995 (90%), Gaps = 62/995 (6%)
Strand=Plus/Plus
Query 64 TCTTGGGT-TTAAGTAAAAATCGAATCTTTGTGTCGGTTTTTAGGGTTCTTGAAACGATA 122
|||||||| || ||||||||||||||| |||||||||| |||||||||||||||||| |
Sbjct 1 TCTTGGGTCTT-AGTAAAAATCGAATC-TTGTGTCGGTCTTTAGGGTTCTTGAAACG--A 56
Query 123 TGGGTAAGTCTAGTGGTAGAAATGGTAACGGAAGCTTTAACGGCAAT-AAATT-----TC 176
||||||||| | |||| |||||||||||||||||||||||||||| | || ||
Sbjct 57 TGGGTAAGTGTGGTGGGAGAAATGGTAACGGAAGCTTTAACGGCAGTGGGTTTCACGGTC 116
Query 177 A------C-G--GAGTTAGACCTTACGTACGGTCTCCAGTTCCACGGCTTAGATGGACGC 227
| | | ||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 117 ACGGTGGCGGCAGAGTTAGGCCTTACGTACGGTCTCCGGTTCCACGACTTAGATGGACGC 176
Query 228 CGGATCTTCACCGTTGTTTCGTTCACGCCGTCGAGATTCTCGGTGGTCAACACCGAGCAA 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CGGATCTTCACCGTTGTTTCGTTCACGCCGTCGAGATTCTCGGTGGTCAACACCGAGCAA 236
Query 288 CACCAAAACTTGTTCTTAAGATGATGGATGTGAAGGGACTTACCATTTCACATGTCAAAA 347
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 237 CACCAAAACTTGTTCTTAAGATGATGGATGTGAAGGGACTCACCATTTCACATGTCAAAA 296
Query 348 GCCACCTTCAGATGTATAGAGGAGGTTCAAAGCTCACTTTGGAGAAACCAGAAGAAAGCT 407
|||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 297 GCCATCTTCAGATGTATAGAGGA---TCAAAGCTCACTTTGGGGAAACCAGAAGAAAGCT 353
Query 408 CATCATCTTCAATAAGAAGAAGACAAGACAGTGAAGAAGATTATTATCTTCATGACAACT 467
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 354 CATCATCTTCAATAAGAAGAAGACAAGACAGTGAAGAAGATAATAATCTTCATGACAACT 413
Query 468 TGTCTTTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTCCTCTTTCTTCAC 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TGTCTTTACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTCCTCTTTCTTCAC 473
Query 528 ATTCTTCATTTAgaggaggaggaggaggaAGAACAAAAG-AGCAGCAGACTTCAGAGTCT 586
||||||||||||| ||||||||| || ||||| || || ||||||||||||||||||||
Sbjct 474 ATTCTTCATTTAGGGGAGGAGGA--AG-AAGAA-AAGAGCAGCAGCAGACTTCAGAGTCT 529
Query 587 GGTGGTTATGATGATGATGCTGACTTTCTTCACATCAAGAAGATGAA-----CGA----T 637
||| | |||||||||||| ||||||||||||||||| ||| ||||| ||| |
Sbjct 530 GGT--T-ATGATGATGATGATGACTTTCTTCACATCATGAACATGAAGAAGACGAAAGAT 586
Query 638 ACGACGACGTTTTTGTCACATCATTTCCCCAAGGGAACAGAGGAGTGGCGGGAACAAGAA 697
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 ACGACGACGTTTCTATCACATCATTTCCCCAAGGGAACAGAGGAGTGGCGGGAACAAGAA 646
Query 698 CACgaagaagaagaagaagaTTTGTCGTTGTCTCTGTCGTTAAATCATCATCATTGGAGA 757
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 647 CACGAAGAAGAAGAAGAAGATTTGTCGTTGTCTCTGTCGCTAAATCATCATCATTGGAGA 706
Query 758 AGCAATGGATCATCGGTGGTGAGCGAAACGAGTGAAGCAGCAGTCTCGACTTGTTCAGCA 817
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 707 AGCAATGGATCATCGGTG---AGCGAAACGAGTGAAGCAGCAGTCTCAACATGTTCAGCA 763
Query 818 CCATTCGTATCCAAAGATTGCTTTGGTTCTTCAAAGATTGATCTTAATCTG--TC----A 871
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 764 CCATTCGTCTCCAAAGATTGCTTTGGTTCTTCAAAGATTGATCTTAATCTTAATCTCTCA 823
Query 872 ATTTCTCTCCTCGGTAGCTAAATAAGTTATGC-AAGATTTAGGTTCAGAGAAAC--TATT 928
||||||||||||||||||||||||||| | || |||||| |||||||| ||||| ||||
Sbjct 824 ATTTCTCTCCTCGGTAGCTAAATAAGTAA-GCCAAGATT-AGGTTCAGTGAAACAATATT 881
Query 929 CGGATGTGTTTTTGAAACTAGGATATTGAATGTT---AGTAGAGAAACCTAGAAAATGAA 985
||||||| |||| ||||||||||| || | |||| || ||||||| || |||||| ||
Sbjct 882 CGGATGTATTTT-GAAACTAGGATTTT-A-TGTTTTCAG-AGAGAAATCTTGAAAATAAA 937
Query 986 GTTTAGATAAAT-TATCAACGCAGCGTTTTGATCG 1019
|||||||| ||| ||| ||||||||||||||||||
Sbjct 938 GTTTAGATCAATATATAAACGCAGCGTTTTGATCG 972
> Ahg471638 jgi|Araly1|471638|fgenesh2_kg.1__1592__AT1G14600.1
Length=898
Score = 327 bits (177), Expect = 7e-89
Identities = 289/341 (85%), Gaps = 16/341 (5%)
Strand=Plus/Plus
Query 182 GTTAGACCTTACGTACGGTCTCCAGTTCCACGGCTTAGATGGACGCCGGATCTTCACCGT 241
|||||||| |||||||| |||||||| || || ||||||||||||||||| ||||||||
Sbjct 43 GTTAGACCGTACGTACGATCTCCAGTGCCTCGTCTTAGATGGACGCCGGAGCTTCACCGG 102
Query 242 TGTTTCGTTCACGCCGTCGAGATT-CTCGGTGGTCAACACCGAGCAACACCAAAACTTGT 300
||||||| |||||||| || || ||||| |||||| | |||||| |||||||||||
Sbjct 103 AGTTTCGTCCACGCCGTTGA-TTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGT 161
Query 301 TCTTAAGATGATGGATGTGAAGGGACTTACCATTTCACATGTCAAAAGCCACCTTCAGAT 360
||| ||||| |||||||| |||||||| ||||| ||||| ||||| ||||| || |||||
Sbjct 162 TCTGAAGATAATGGATGTCAAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGAT 221
Query 361 GTATAGAGGAGGTTCAAAGCTCA--C-T-TTGGAGAAACCAGAAGAAAG--C-TCATCAT 413
|||||| || | | || | |||| | | ||||| ||||||||||| || | ||| |||
Sbjct 222 GTATAG-GG-GATCCAGA-CTCACTCTTCTTGGA-AAACCAGAAGAGAGTTCTTCACCAT 277
Query 414 CTTCAATAAGAAGAAGACAAGACAGTGAAGAAGATTATTATCTTCATGACAACTTGTCTT 473
|||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 278 CTTCAAGAAGAAGAAGACAAGACAATGAAGAAG---ATCATCTTCATGACAACTTGTCTG 334
Query 474 TACACACAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 514
||||| |||||||||||||||||||||||||||||||||||
Sbjct 335 TACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTT 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5