BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G02061.1

Length=1227
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952640 jgi|Araly1|952640|scaffold_9800001.1                       183    2e-45


> Ahg952640 jgi|Araly1|952640|scaffold_9800001.1
Length=256

 Score =  183 bits (99),  Expect = 2e-45
 Identities = 129/144 (90%), Gaps = 0/144 (0%)
 Strand=Plus/Plus

Query  1    ATGAATCTATCGAACCGTTTTGGCTCCAATTCCAAGACGGCGATACTCAACGATTCTTAC  60
            ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
Sbjct  21   ATGAATCTATCGAACCGTTTTGGCTCCAACTCCAAGACGGGGATACCCAACGATTCTTCC  80

Query  61   TCCGACGAGAATCATTCTTCCTCCGCCGCCGCCGCCGTAACTTCCGTCGTAATCCCACCG  120
            ||||||||||||| |||||||||||||||| ||||||  ||  |||||||||| || |||
Sbjct  81   TCCGACGAGAATCGTTCTTCCTCCGCCGCCACCGCCGCCACCGCCGTCGTAATGCCGCCG  140

Query  121  TGCTCCGGCAATGTACTCCGAGCC  144
            |||||| ||||||||||  |||||
Sbjct  141  TGCTCCAGCAATGTACTTGGAGCC  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45823746234


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5