BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02070.1
Length=2116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935944 jgi|Araly1|935944|scaffold_500135.1 3003 0.0
Ahg935945 jgi|Araly1|935945|scaffold_500136.1 638 0.0
Ahg312456 jgi|Araly1|312456|fgenesh1_pm.C_scaffold_1001236 436 2e-121
> Ahg935944 jgi|Araly1|935944|scaffold_500135.1
Length=1840
Score = 3003 bits (1626), Expect = 0.0
Identities = 1783/1856 (96%), Gaps = 22/1856 (1%)
Strand=Plus/Plus
Query 17 CATAGAACACAGAAGAATCCATGGCTGCTTCTTCATCCTCCGCTGCTTCCTTCTTTGGAG 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATAGAACACAGAAGAATCCATGGCTGCTTCTTCATCCTCCGCTGCTTCCTTCTTTGGAG 60
Query 77 TCCGACAAGATGACCAATctcacctcctcccacctaattcctccgccgctgctcctcctc 136
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCCGACAAGATGATCAATCTCACCTCCTCCCTCCTAATTCCTCCGCCGCTGCTCCTCCTC 120
Query 137 ctccacctcctcaccaccaGGCACCGCTGCCACCGCTTGAAGCTCCACCGCAGAAAAAGA 196
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCACCTCCTCACCACCAGACACCGCTGCCACCGCTTGAAGCTCCACCGCAGAAAAAGA 180
Query 197 AGAGAAACCAACCAAGAACTCCAAATTCCGATGCGGAAGTGATAGCTTTATCTCCAAAGA 256
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 AGAGAAACCAACCAAGAACTCCAAATTCCGATGCAGAAGTGATAGCTTTATCTCCAAAGA 240
Query 257 CACTAATGGCTACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAAC 316
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 CACTAATGGCTACAAACAGATTCATTTGTGAAGTATGCAACAAAGGGTTTCAAAGAGAAC 300
Query 317 AGAATCTACAACTTCACCGAAGAGGACACAATCTTCCATGGAAGCTCAAACAGAAATCGA 376
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AAAATCTACAACTTCACCGAAGAGGACACAATCTTCCATGGAAGCTGAAACAGAAATCGA 360
Query 377 CCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACC 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACC 420
Query 437 CGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTG 496
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTG 480
Query 497 AAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCGGATTGGAAAG 556
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 AAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAG 540
Query 557 CTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTC 600
Query 617 GGCGAGACAGTTTCATCACACATAGAGCTTTCTGTGACGCGTTGGCTCAAGAGAGTGCGA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGCGAGACAGTTTCATCACACATAGAGCTTTCTGTGACGCGTTGGCTCAAGAGAGTGCGA 660
Query 677 GACACCCAACTTCATTGACTTCTTTGCCAAGTCATCACTTCCCGTACGGACAAAACACAA 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 GACACCCAACTTCATTGACTTCTTTGCCAAGTCATCACTTCCCGTACGGACAAAACACCA 720
Query 737 ACAACTCCAACAACAACGCTTCAAGCATGATCCTTGGTCTGTCCCACATGGGGGCCCCAC 796
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACAACTCCAACAACAACACTTCAAGCATGATCCTTGGTCTGTCCCACATGGGGGCCCCAC 780
Query 797 AGAATCTTGATCACCAGCCCGGTGACGTTCTCCGTCTTGGAAGCggaggaggaggaggag 856
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAATCATGATCACCAGTCCGGTGACGTTCTCCGTCTTGGAAGCGGAGGAGGAGGAG--- 837
Query 857 gagCCGCTTCACGCTCTTCTTCTGATCTCATTGCTGCGAATGCTTCAGGCTACTTCATGC 916
|||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ---CCGCTTCACGGTCTGCCTCTGATCTCATTGCTGCGAATGCTTCAGGCTACTTCATGC 894
Query 917 AAGAGCAAAACCCTAGCTTTCATGATCAACAAGatcatcatcatcatcatcaACAAGGGT 976
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 AAGAGCAAAACCCTAGCTTTCATGATCAACAAGACCATCATCATCATCATCAACAAGGGT 954
Query 977 TTTTGGCTGGGAACAATAACATCAAGCAATCACCAATGAGTTTTCAACAGAATCTGATGC 1036
||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 955 TTTTGGCTGCGAACAATAACATCAAGCCATCACCGATGAGTTTTCAACAGAATCTGATGC 1014
Query 1037 AGTTCTCACATGATAACCATAATTCTGCTCCCTCCAATGTCTTCAATCTCAGCTTCCTCT 1096
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 1015 AGTTCTCACATGATAACCATAACTCTGCTTCCTCCAATCTCTTCAATCTCAGCTTCCTCT 1074
Query 1097 CCGGAAACAACGGAGTTACTTCTGCCACAAGTAACCCTAATGCTGCCGCCGCTGCTGCTG 1156
| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||
Sbjct 1075 CTGGAAACAACGGAGTTACTTCTGCGACAAGCAACCCTAATGCTGCCAATGCTGCCGCTG 1134
Query 1157 TTTCTTCTGGTAATCTTATGATATCAAACCATTATGATGGCGAAAATGCTGTTGGAGGAG 1216
||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 1135 TTTCTTCGGGTAATCTTATGATTTCAAACCATTTTGATGGTGAAAATGCTGTTGGAGGAG 1194
Query 1217 GAGGAG-A--AG--G-AAGCACTGGTCTCTTCCCTAACAATCTGATGAGCTCGGCAGATA 1270
|||||| | || | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1195 GAGGAGGAGGAGAAGGAAGCACTGGTCTCTTCCCTAACAATCTGATGAGCTCGGCCGATA 1254
Query 1271 GAATTAGCTCAGGATCAGTCCCTTCACTCTTTAGCTCATCAATGCAAAGTCCAAATTCAG 1330
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1255 GAATCAGCTCAGGATCAGTCCCTTCACTCTTTAGCTCATCAATGCAAAATCCAAATTCAG 1314
Query 1331 CACCTCACATGTCAGCCACTGCCCTTCTACAGAAAGCTGCTCAAATGGGTTcaacctcaa 1390
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1315 CACCTCACATGTCAGCCACTGCCCTTCTTCAGAAAGCTGCTCAAATGGGTTCAACCTCAA 1374
Query 1391 gcaacaacaacaacggaagcaacaccaacaacaataacaaTGCCTCATCGATCCTAAGAA 1450
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1375 GCAACAACAACAACGGAAGCAACAATAACAACAATAACAATGCCTCATCGATCCTAAGAA 1434
Query 1451 GCTTTGGGAGTGGAATCTACGGAGAAAATGAGAGTAATCTTCAGGATTTGATGAATTCTT 1510
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1435 GCTTTGGGAGTGGAATCTACGGAGAAAACGAGAGTAATCTTCAGGATTTGATGAATTCTT 1494
Query 1511 TCTCTAACCCCGGCGCAACGGGAAACGTTAACGGAGTTGATTCTCCTTTTGGTTCGTACG 1570
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1495 TCTCTAACCCCGGCGCAACGGGAAACGTTAACGGAGTAGATTCTCCTTTTGGTTCGTATG 1554
Query 1571 GAGGAGTGAACAAAGGATTAAGCGCTGACAAACAGAGCATGACTAGAGACTTTCTTGGAG 1630
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1555 GAGGAGTGAACAAAGGATTAAGCGCGGATAAGCAGAGCATGACTAGAGACTTTCTTGGAG 1614
Query 1631 TTGGACAGATCGTAAAAAGCATGAGTGGAAGCGGAGGGTTTcaacaacagcaacaacagc 1690
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1615 TTGGACAGATCGTAAGAAGCATGAGTGGAAGCGGAGGGTTTCAACAACAGCAACAGCAGC 1674
Query 1691 aacagcagcaacaacaacaacaacaacaTGGAAATAGTAGAGAAAGAGTTGGCTCGTCGT 1750
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1675 AACAGCA--A-CAACAACAACA------TGGAAATAGTAGAGAAAGAGTTGGCTCGTCGT 1725
Query 1751 CGGATTCCGCTGATAGAAGCAGCATGAATGTGAATACCGGAGGTGGTCCGGCAAGTACTT 1810
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1726 CGGATTCCGCCGATAGAAGCAGCATGAATGTGAATACCGGTGGTGGTCCGGCAAATACTT 1785
Query 1811 CACCACCTTATGGAATCCATCATGCGAGTTTCTAAGAAGATAAAAGAAGTTTCTAA 1866
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1786 CACCACCTTATGGAATCCATCATGCGAGTTTCTAAGAAGATAAAA-AAGTTTCTAA 1840
> Ahg935945 jgi|Araly1|935945|scaffold_500136.1
Length=1688
Score = 638 bits (345), Expect = 0.0
Identities = 459/513 (89%), Gaps = 12/513 (2%)
Strand=Plus/Plus
Query 177 AGCTCCACCGCAGAA-AAA-GAAGAGAAACCAACCAAG-AACTCCAAATTCC-GATGCGG 232
||||||||| | || ||| | | ||||||||||| | ||| ||||| ||| ||||| |
Sbjct 267 AGCTCCACCACCCAAGAAACG-A-AGAAACCAACCCGGAAAC-CCAAA-TCCTGATGCAG 322
Query 233 AAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGTGAAGTAT 292
||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 323 AAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGTGATGTAT 382
Query 293 GCAACAAAGGGTTTCAAAGAGAACAGAATCTACAACTTCACCGAAGAGGACACAATCTTC 352
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 383 GCAACAAAGGATTTCAAAGAGAACAAAATCTACAGCTTCACCGAAGAGGACACAATCTCC 442
Query 353 CATGGAAGCTCAAACAGAAATCGACCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGG 412
|||||||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 443 CATGGAAGCTGAAACAGAAGTCAACCAAAGAAGTGAAGAGGAAAGTATATCTTTGTCCGG 502
Query 413 AGCCCTCGTGCGTCCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 472
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AGCCGACGTGCGTTCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 562
Query 473 AACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTT 532
| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 563 AGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGCGAGAAATGTTCTAAGCGTT 622
Query 533 ACGCTGTTCAATCGGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTT 592
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| |
Sbjct 623 ACGCTGTTCAATCGGATTGGAAGGCTCACTCTAAGACTTGTGGTACTAAAGAATATCGAT 682
Query 593 GTGACTGTGGTAC-ACTCTTCTCTCGGCGAGACAGTTTCATCACACATAGAGCTTTCTGT 651
||||||||||||| | |||||||| | || || |||| |||||||||||||||||||||
Sbjct 683 GTGACTGTGGTACCA-TCTTCTCTAGACGTGATAGTTACATCACACATAGAGCTTTCTGC 741
Query 652 GACGCGTTGGCT-CAAGAGAGTGCGAGACACCC 683
|| || ||| | ||||||||||| ||| ||||
Sbjct 742 GATGCATTGA-TACAAGAGAGTGCAAGAAACCC 773
> Ahg312456 jgi|Araly1|312456|fgenesh1_pm.C_scaffold_1001236
Length=1485
Score = 436 bits (236), Expect = 2e-121
Identities = 312/349 (89%), Gaps = 4/349 (1%)
Strand=Plus/Plus
Query 269 CAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAGAATCTACAAC 328
||| || |||| |||||||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct 182 CAAGCAAATTCCTATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAACAGAATCTGCAGC 241
Query 329 TTCACCGAAGAGGACACAATCTTCCATGGAAGCTCAAACAGAAA-TCGACCAAAGAAGTG 387
||||| | || |||||||| |||||||||||||| ||||| ||| || | ||||||||||
Sbjct 242 TTCACAGGAGGGGACACAACCTTCCATGGAAGCTGAAACA-AAAGTCCAACAAAGAAGTG 300
Query 388 AAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACCCGTCACGTGCT 447
| ||| || ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct 301 AGGAGGAAGGTGTACCTTTGCCCGGAGGCCTCGTGCGTCCACCATGACCCGGCACGTGCT 360
Query 448 CTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGAAAAGAAGTGG 507
|||||||||||||||||||||||||| ||||| || || || |||||||| |||||||||
Sbjct 361 CTCGGAGACCTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAGAAGTGG 420
Query 508 AAATGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCGGATTGGAAAGCTCACTCCAAG 567
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 421 AAGTGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAAG 480
Query 568 ACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTAC-ACTCTTCTCT 615
|| |||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 481 ACCTGTGGTACCAAAGAGTATCGATGTGACTGTGGTACCA-TCTTCTCT 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79608612050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5