BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02080.1
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935945 jgi|Araly1|935945|scaffold_500136.1 2752 0.0
Ahg935944 jgi|Araly1|935944|scaffold_500135.1 627 1e-178
Ahg312456 jgi|Araly1|312456|fgenesh1_pm.C_scaffold_1001236 412 3e-114
Ahg496927 jgi|Araly1|496927|fgenesh2_kg.8__2743__AT5G66730.1 279 4e-74
> Ahg935945 jgi|Araly1|935945|scaffold_500136.1
Length=1688
Score = 2752 bits (1490), Expect = 0.0
Identities = 1625/1691 (96%), Gaps = 5/1691 (0%)
Strand=Plus/Plus
Query 7 TATGGCTTATTTTTaaaagaagaagaacacaaaacagt--agagagagaaagagatatag 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TATGGCTTATTTTTAAAAGAAGAAGAACACAAAACAGTAGAGAGAGAGAAAGAGATATAC 60
Query 65 agatagagagagataGGGCTTTGAGATTATTCTCTTCCACGCAAAGAAGAAGATCTAAAG 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATAGAGAGAGATAGGGCTTTGAGATTATTCTCTTCCACGCAAAGAAGAAGATCTAAAG 120
Query 125 ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCTCTGCTCAGCCT 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCCCTGCTCAGCCT 180
Query 185 TTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTAACCGGAAAGATACTTTTATG 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTAACCGGAAAGATACTTTTATG 240
Query 245 TCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCC 300
Query 305 GGAAACCCAAATCCTGATGCGGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACA 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAACCCAAATCCTGATGCAGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACA 360
Query 365 AACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTT 424
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 361 AACAGATTCATATGTGATGTATGCAACAAAGGATTTCAAAGAGAACAAAATCTACAGCTT 420
Query 425 CACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAG 484
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 CACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAGAAGTCAACCAAAGAAGTGAAG 480
Query 485 AGGAAAGTGTATCTTTGTCCGGAGCCAACGTGCGTTCACCATGACCCGTCACGTGCTCTC 544
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGGAAAGTATATCTTTGTCCGGAGCCGACGTGCGTTCACCATGACCCGTCACGTGCTCTC 540
Query 545 GGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAA 600
Query 605 TGTGAGAAATGTTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACT 664
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 601 TGCGAGAAATGTTCTAAGCGTTACGCTGTTCAATCGGATTGGAAGGCTCACTCTAAGACT 660
Query 665 TGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTAC 724
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTGGTACTAAAGAATATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTAC 720
Query 725 ATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTG 784
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 ATCACACATAGAGCTTTCTGCGATGCATTGATACAAGAGAGTGCAAGAAACCCTACCGTG 780
Query 785 AGCTTTACGTCAATGACAGCTGCTAGTAGTGGTGTCGGCTCCGGCGGAATCTACGGGAGA 844
||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 781 AGCTTTACGTCAATGGCAGCTGCTAGTAGCGGTGTCGGCTCTGGGGGAATCTACGGGAGA 840
Query 845 CTTGGCGGTGGCAGTGCTCTCTCACACCACCATTTGAGTGACCATCCAAATTTTGGATTT 904
|||||||||||||| |||||||||||||||||||| ||||||||||| | || |||||||
Sbjct 841 CTTGGCGGTGGCAGCGCTCTCTCACACCACCATTTAAGTGACCATCCGAGTTCTGGATTT 900
Query 905 AACCCTCTCGTGGGTTACAATCTGAACATTGCATCTTCTGATAATAGGAGAGACTTTATT 964
|||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 901 TCCCCTCTCGCGGGTTACAATCTGAACATTGCAACTTCTGAAAATAGGAGAGACTTTCTT 960
Query 965 CCGCAATCATCAAACCCTAACTTCCTAATCCAAAGCGCTTCGAGCCAAGGAATGTTGAAT 1024
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 961 CCGCAATCGTCAAACCCTAACTTCCTAATCCAATGCGCTTCGAGCCAAGGAATGTTGACT 1020
Query 1025 ACAACGCCAAACAACAATAACCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGAT 1084
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACAACGCCAAACAACAATGATCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGAT 1080
Query 1085 CCAGTCGACAACATCAACCTCAAGAGTAGCGGCACCAACAACAGCTTCTTCAACCTCGGA 1144
||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1081 CCAGTGGACAACATCAACCTCAAGAATAGCAACACCAACAACAGCTTCTTCAACCTCGGA 1140
Query 1145 TTCTTTCAAGAAAACACGAAGAACTCAGAGACGAGTCTTCCTTCTCTATATAGCACCGAC 1204
||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1141 TTCTTTCAAGAAAACACCAAGAACTCGGAGACGACTCTTCCTTCTCTATATAGCACCGAC 1200
Query 1205 GTTCTTGTTCATCACCGTGAAGAAAACTTGAACGCGGGTTCTAACGTGTCAGCCACGGCA 1264
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1201 GTTCTTGTTCATCACTGTGAAGAAAACTTGAACACGGGTTCTAACGTGTCAGCTACGGCA 1260
Query 1265 CTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGACCCATCTGCTTTGTTC 1324
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1261 CTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGATCCTTCTGCTTTGTTC 1320
Query 1325 AGAGGCTTAGCTTCTTCGTCTAACTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGA 1384
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGAGGCTTAGCTTCTTCGTCCAATTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGA 1380
Query 1385 CGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTCTAATGAACTCATTAGCCGCC 1444
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1381 CGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTCTAATGAACTCATTAACGGCC 1440
Query 1445 GTTAATGGAGGTGGCGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGA 1504
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GTTAATGGCGGTGGAGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGA 1500
Query 1505 AATATGAGCGGCTCGGACAAGTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGA 1564
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AATATGAGCGGCTCGGATAAGTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGA 1560
Query 1565 AATGTAAATCGCggtggtggtggtggtggtCGCGGCAGTGCTCGTGGCGGAGTTTCTTTG 1624
||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 1561 AATGTAAATCGCGGTGGTGGTGGTGGT---CGCGGCAGTGGTCGTGGAGGAGTTTCTTTG 1617
Query 1625 GATGGTGAGGCGAAGTTTCCTGAGCAAAATTATCCATTTGGAAGAGGTTGATAATATCTT 1684
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1618 GATGGTGAAGTGAAGTTTCCTGAGCAAAATCATCCATTTGGAAGAGGTTGATAATATCTT 1677
Query 1685 ATTATTGTATA 1695
|||||||||||
Sbjct 1678 ATTATTGTATA 1688
> Ahg935944 jgi|Araly1|935944|scaffold_500135.1
Length=1840
Score = 627 bits (339), Expect = 1e-178
Identities = 457/513 (89%), Gaps = 12/513 (2%)
Strand=Plus/Plus
Query 271 AGCTCCACCACCCAAGAAACG-A-AGAAACCAACCCGGAAAC-CCAAA-TCCTGATGCGG 326
||||||||| | || ||| | | ||||||||||| | ||| ||||| ||| ||||| |
Sbjct 161 AGCTCCACCGCAGAA-AAA-GAAGAGAAACCAACCAAG-AACTCCAAATTCC-GATGCAG 216
Query 327 AAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGCGATGTAT 386
||||| |||| |||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 217 AAGTGATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCATTTGTGAAGTAT 276
Query 387 GTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTTCACCGAAGAGGACACAATCTCC 446
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 277 GCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTTCACCGAAGAGGACACAATCTTC 336
Query 447 CATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAGAGGAAAGTGTATCTTTGTCCGG 506
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 337 CATGGAAGCTGAAACAGAAATCGACCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGG 396
Query 507 AGCCAACGTGCGTTCACCATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 566
|||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 397 AGCCCTCGTGCGTCCACCATGACCCCTCACGTGCTCTCGGAGACCTCACCGGAATCAAGA 456
Query 567 AGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGTGAGAAATGTTCTAAGCGTT 626
| ||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||
Sbjct 457 AACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTT 516
Query 627 ACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAAAGAGTATCGAT 686
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 517 ACGCTGTTCAATCAGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTT 576
Query 687 GTGACTGTGGTAC-CATCTTCTCTAGACGTGATAGTTACATCACGCATAGGGCTTTCTGC 745
||||||||||||| | |||||||| | || || |||| |||||| ||||| ||||||||
Sbjct 577 GTGACTGTGGTACAC-TCTTCTCTCGGCGAGACAGTTTCATCACACATAGAGCTTTCTGT 635
Query 746 GATGCATTGA-TACAAGAGACTGCAAGAAACCC 777
|| || ||| | ||||||| ||| ||| ||||
Sbjct 636 GACGCGTTGGCT-CAAGAGAGTGCGAGACACCC 667
> Ahg312456 jgi|Araly1|312456|fgenesh1_pm.C_scaffold_1001236
Length=1485
Score = 412 bits (223), Expect = 3e-114
Identities = 309/351 (88%), Gaps = 4/351 (1%)
Strand=Plus/Plus
Query 363 CAAACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGC 422
||| || |||| |||| || || || ||||||||||| ||||| ||||| ||||| ||||
Sbjct 182 CAAGCAAATTCCTATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAACAGAATCTGCAGC 241
Query 423 TTCACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAAT-CAACCAAAGAAGTG 481
||||| | || |||||||| || |||||||||||||||||||| | ||| ||||||||||
Sbjct 242 TTCACAGGAGGGGACACAACCTTCCATGGAAGCTGAAACAAAAGTCCAA-CAAAGAAGTG 300
Query 482 AAGAGGAAAGTGTATCTTTGTCCGGA-GCCAACGTGCGTTCACCATGACCCGTCACGTGC 540
| |||||| ||||| ||||| ||||| ||| ||||||| |||||||||||| |||||||
Sbjct 301 AGGAGGAAGGTGTACCTTTGCCCGGAGGCC-TCGTGCGTCCACCATGACCCGGCACGTGC 359
Query 541 TCTCGGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTG 600
||||||||||||||||||||||||||||||||| || || || || || || ||||||||
Sbjct 360 TCTCGGAGACCTCACCGGAATCAAGAAGCATTACTATCGGAAGCACGGTGAGAAGAAGTG 419
Query 601 GAAATGTGAGAAATGTTCTAAGCGTTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAA 660
||| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GAAGTGCGATAAATGCTCTAAGCGTTACGCTGTTCAATCTGATTGGAAAGCTCACTCTAA 479
Query 661 GACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG 711
||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACCTGTGGTACCAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAG 530
> Ahg496927 jgi|Araly1|496927|fgenesh2_kg.8__2743__AT5G66730.1
Length=2171
Score = 279 bits (151), Expect = 4e-74
Identities = 375/482 (78%), Gaps = 19/482 (4%)
Strand=Plus/Plus
Query 302 CCCGGAAACCCAAATCCTGATGCGGAAGTGGTAGCATTATCTCC-AAAGACACTAATGGC 360
||||||| || |||| || ||||||||| |||| || || || ||| ||||| |||||
Sbjct 592 CCCGGAATGCCTGATCCAGACGCGGAAGTGATAGCTTTGTCACCTAAA-ACACTTATGGC 650
Query 361 TAC-AAACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTAC 419
|| || | ||||| | ||||| | ||||||||||| |||||| | || || ||||| |
Sbjct 651 AACGAATC-GATTCGTTTGCGAAATCTGTAACAAAGGTTTTCAACGTGACCAGAATCTTC 709
Query 420 AGCTTCACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAG 479
||||||| || | || |||||||| |||||||| || | ||| | ||| | |||||||
Sbjct 710 AGCTTCATCGTCGTGGTCACAATCTTCCATGGAAACTTAGACAGAGATCGAGTAAAGAAG 769
Query 480 TGAAGAGGAAAGTGTATCTTTGTCCGGAGCCAACG-TGCGTTCACCATGACCCGTCACGT 538
||| || ||| || ||| ||||||| | | | || ||||| |||||||||||||||
Sbjct 770 TGAGGAAGAAGGTTTATGTTTGTCCTGTTTC-TGGTTGTGTTCATCATGACCCGTCACGT 828
Query 539 GCTCTCGGAGACCTCACCGGAATCAAGAAGCA-TTATTACCGTAAACATGGCGAAAAGAA 597
||||| ||||| || || ||||||||||| || || || || ||||| || || |||||
Sbjct 829 GCTCTTGGAGATCTTACTGGAATCAAGAAACACTT-TTGTCGGAAACACGGTGAGAAGAA 887
Query 598 GTGGAAATGTGAGAAATGTTCTAAG-CGTTACGCTGTTCAATCAGATTGGAAAGCTCACT 656
| || |||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 888 ATTCAAGTGTGAGAAATGTTCTAAGAAG-TATGCTGTTCAATCAGATTGGAAAGCTCACT 946
Query 657 CTAAGACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTAC-CATCTTCTCTAG-ACG 714
| |||| |||||| ||||| |||||| ||| || ||||| || | | || ||||| | |
Sbjct 947 CGAAGATTTGTGGCACTAAGGAGTATAAATGCGATTGTGGAACTC-TGTTTTCTAGGA-G 1004
Query 715 TGATAG-TTACATCACGCATAGGGCTTTCTGCGATGCATTGA-TACAAGAGACTGC-AAG 771
||||| || || |||||||| |||||||| ||||| ||| | |||||| ||| |||
Sbjct 1005 AGATAGCTTT-ATAACGCATAGAGCTTTCTGTGATGCGTTGGCTG-AAGAGAGTGCGAAG 1062
Query 772 AA 773
||
Sbjct 1063 AA 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69248065410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5