BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02090.1
Length=2617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484134 jgi|Araly1|484134|fgenesh2_kg.5__126__AT2G02090.1 4041 0.0
> Ahg484134 jgi|Araly1|484134|fgenesh2_kg.5__126__AT2G02090.1
Length=2576
Score = 4041 bits (2188), Expect = 0.0
Identities = 2483/2616 (95%), Gaps = 58/2616 (2%)
Strand=Plus/Plus
Query 1 AACCTTTCTTTGAAATC-TTGACCTTTCCCTTCC-T-T-CTCCGCTAAATTCGTTTTAAT 56
||||||||||||||||| |||||||||||||||| | | |||||| |||||||||||||
Sbjct 1 AACCTTTCTTTGAAATCTTTGACCTTTCCCTTCCTTCTCCTCCGCGAAATTCGTTTTAA- 59
Query 57 TTCAtcttcttcttcttcttcAATTCGATGCAATAATAGTCACTTCAATCTCAATCTAGG 116
|| |||||||| |||||||||||||||||| | | | || ||||||||||
Sbjct 60 TT--TCTTCTTCGTCTTCTTCAATTCGATGC------A---A--T-AA--TCAATCTAGG 103
Query 117 GTTTTCAATTTTCTTCATGTGAAttttttttCCCCTTCTTCTCAATTTCAA--TTCAATC 174
|||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 104 GTTTTCAA-TTTCTTCATGTG-ATTTTTTTT--TCTTCTTCTCAATTTCAATTTTCAATC 159
Query 175 TGGGATTCGTAAATTCTCGGAAGATGAAACGCGATTTCGACGAAATCTCCGAGGAAGAGT 234
||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TGGGATTCG--GA------GAAGATGAAACGCGATTTCGACGAAATCTCCGAGGAAGAGT 211
Query 235 GGTCTCAACACTCGTTTAACGCTTCGCGAGTTCTTAAACGACCACGGACTCCGAAGAAGA 294
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 212 GGTCTCAACACTCTTTTAACGCTTCGCGAGTTCTTAAACGGCCACGGACTCCGAAGAAGA 271
Query 295 CTCGCGCGGCGACGAATCCAACGCCGT-CGATTGAGTCTTTTGCGTTTAGGAGACCTTCG 353
|||| || || |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 272 CTCG-GC--CGGTGAATCCAACGCC-TCCGATTGAGTCTTTTGCGTTTAGGAGACCTTCG 327
Query 354 ACGGCGATGACGATT--GAG-AGTAATAGCAGCGATGGTGATTGTGTTGAGATTGAGGAT 410
||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 328 ACGGCGATGGCGATTGAGAGTAGTAATAGTAGCGATGGTGATTGTGTTGAGATTGAGGAT 387
Query 411 TTGGGAGATTCGGATTCGGATGTGAAGATTGTGAATGGTGAGGATTTGTTGTTAGAGGAT 470
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 388 TTAGGAGATTCGGATTCGGATGTGAAGATTGTGAATGGTGAGGATTTGTTGTTGGAGGAT 447
Query 471 GAAGAAGAAGTGGAAGAGACTAAGGTTGTGATGCGCGCTGCGAGAGTTGGTAGGAGATTT 530
|| |||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 448 GAGGAAGAAGTTGAGGAGACCAAGGTTGTGATGCGAGCTGCGAGAGTTGGTAGGAGATTT 507
Query 531 GTGATTGAAGATGAAGAAGCGAGtgatgatgatgatgatgaggctgagagtagtgctagt 590
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 508 GTGATTGAAGATGAAGAAGCGA--G-TGATGATGATGATGAGGCTGAGAGTAGTGCTAGT 564
Query 591 gaggatgaatttggaggaggaggaggaggaagtggaggaaggagaggagAAGATGAAGAT 650
||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 565 GAGGACGAATTTGGAAGAGGAGGAGGAGGTGGTGGAGGAAGGAGAGGAGAAGATGAAGAT 624
Query 651 GTTGTGGGGAAGGCATTGCAAAAGTGTGCTAAAATCTCAGCGGATCTTCGAAAAGAGCTT 710
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 625 GTTGTTGGGAAGGCATTGCAAAAGTGTGCTAAAATCTCAGCCGATCTTCGAAAGGAGCTT 684
Query 711 TATGGTACTTCTTCTGGTG-T--TAC---TGATAGATACTCTGAAGTTGAAACTTCTACT 764
|||||||| |||||||| | | ||| ||| |||||||||||||||||||||||||||
Sbjct 685 TATGGTACATCTTCTGGGGTTACTACTTGTGAGAGATACTCTGAAGTTGAAACTTCTACT 744
Query 765 GTCAGGATTGTCACACAGAATGATATTGATGATGCATGTAAAGCAGAGGATTCTGATTTT 824
|| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 745 GTGAGGATTGTCACACAGAATGATATAGATGATGCCTGTAAAGGAGAGGATTCTGATTTT 804
Query 825 CAGCCTATACTCAAGCCGTACCAGTTAGTTGGTGTTAACTTTCTTCTTCTGTTGTATAAG 884
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 805 CAGCCTATACTCAAGCCTTACCAGTTAGTTGGTGTTAACTTTCTTCTTTTGTTGTATAAG 864
Query 885 AAAGGAATTGAAGGAGCCATTTTAGCCGATGAGATGGGTCTTGGAAAGACCATTCAGGCA 944
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 865 AAAGGAATTGAAGGAGCCATTCTAGCTGATGAGATGGGTCTTGGAAAGACCATTCAGGCA 924
Query 945 ATCACATATTTAACCCTCCTAAGTCGCTTAAACAATGACCCTGGTCCTCATTTGGTTGTA 1004
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 925 ATCACATATTTAACCCTCCTAAATCGCTTAAACAATGACCCTGGTCCTCATTTGGTTGTA 984
Query 1005 TGCCCTGCCTCTGTCTTGGAAAACTGGGAGAGAGAGCTCAGAAAATGGTGTCCGTCGTTT 1064
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 985 TGCCCTGCCTCTGTCTTGGAAAATTGGGAGAGAGAGCTCAGAAAATGGTGTCCATCGTTT 1044
Query 1065 ACTGTACTTCAATACCACGGAGCTGCGAGAGCAGCCTACTCAAGAGAATTGAATTCTTTG 1124
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1045 ACTGTACTTCAATACCACGGGGCTGCGAGAGCAGCATACTCAAGAGAATTGAATTCTTTG 1104
Query 1125 TCAAAAGCTGGGAAGCCACCACCATTCAATGTGCTTCTTGTGTGTTACTCTCTGTTTGAA 1184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TCAAAAGCTGGGAAGCCACCGCCATTCAATGTGCTTCTTGTGTGTTACTCTCTGTTTGAA 1164
Query 1185 CGGCATAGTGAACAACAGAAAGATGACCGAAAAGTACTGAAACGGTGGCGCTGGAGCTGT 1244
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1165 CGGCATAGTGAACAACAGAAAGATGACCGAAAAGTACTAAAACGATGGCGCTGGAGCTGT 1224
Query 1245 GTTTTGATGGATGAAGCCCATGCGTTAAAGGATAAGAATAGTTATAGGTGGAAAAACTTG 1304
||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct 1225 GTTTTGATGGATGAAGCCCATGCTTTAAAAGATAAGAACAGTTACAGGTGGAAAAATTTG 1284
Query 1305 ATGTCTGTGGCCAGAAACGCAAACCAGCGTCTTATGCTTACAGGAACGCCTCTACAAAAT 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 ATGTCTGTGGCCAGAAACGCAAACCAGCGTCTTATGCTTACAGGAACGCCTCTACAAAAT 1344
Query 1365 GATTTGCATGAACTATGGTCGCTGTTGGAGTTCATGTTGCCTGATATATTTACGACAGAG 1424
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1345 GATTTACATGAATTATGGTCGCTGTTGGAGTTCATGTTGCCTGATATATTTACTACAGAG 1404
Query 1425 AATGTTGACTTGAAGAAGTTGTTGAATGCAGAAGATACTGAGTTGATTACTCGAATGAAA 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 AATGTTGACTTGAAGAAGTTGTTGAATGCAGAAGATACTGAGTTGATTACTCGAATGAAA 1464
Query 1485 TCTATCTTAGGTCCTTTCATCTTGAGGCGTTTAAAATCTGATGTCATGCAGCAACTTGTT 1544
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TCTATTTTAGGTCCTTTCATCTTGAGGCGTTTAAAATCTGATGTCATGCAGCAACTTGTT 1524
Query 1545 CCGAAGATACAGCGGGTTGAATATGTATTAATGGAGAGAAAGCAGGAAGATGCATATAAA 1604
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1525 CCGAAGATACAGCGGGTTGAATATGTATTAATGGAGAAAAAGCAGGAAGATGCATATAAA 1584
Query 1605 GAAGCCATAGAGGAGTATCGTGCTGCTTCTCAAGCACGGCTTGTGAAGCTTTCATCAAAA 1664
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1585 GAAGCCATAGAGGAGTATCGTGCTGCTTCTCAAGCACGGCTTTTGAAGCTTTCATCAAAA 1644
Query 1665 TCCTTGAATTCTTTAGCCAAGGCACTTCCAAAGCGTCAAATTTCAAACTATTTTACTCAA 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 TCCTTGAATTCTTTAGCCAAGGCACTTCCAAAGCGTCAAATTTCAAACTATTTTACTCAA 1704
Query 1725 TTCCGGAAGATTGCAAACCATCCATTGTTAATTAGGCGGATATACAGCGATGAGGATGTC 1784
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TTTCGGAAGATTGCAAATCATCCATTGTTAATTAGGCGGATATACAGCGATGAGGATGTC 1764
Query 1785 ATTCGCATCGCCAGGAAATTGCACCCAATCGGTGCATTTGGATTTGAATGTTCCTTGGAT 1844
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1765 ATTCGCATCGCCAGGAAATTGCACCCAATCGGTGCATTTGGATTCGAATGTTCCTTGGAG 1824
Query 1845 AGAGTTATCGAGGAAGTTAAGGGTTTCAACGATTTCCGTATCCACCAGCTTTTGTTCCAA 1904
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1825 AGAGTTATCGAGGAAGTTAAGGGTTACAACGATTTCCGTATCCACCAGCTTTTGTTCCAA 1884
Query 1905 TATGGAGTTAACGATACCAAAGGAACTCTCTCAGACAAACATGTCATGCTCTCAGCAAAA 1964
| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1885 TTTGGAGTTAATGATACCAAAGGAACTCTCTCTGACAAACATGTCATGCTCTCAGCAAAA 1944
Query 1965 TGTCGGACATTAGCTGAGCTTCTCCCTTCAATGAAGAAATCCGGCCATCGTGTTCTAATA 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 TGTCGGACATTAGCTGAGCTTCTCCCTTCAATGAAGAAATCCGGCCATCGTGTTCTAATA 2004
Query 2025 TTTAGTCAATGGACATCGATGCTCGATATCTTAGAATGGACACTTGATGTCATCGGCGTT 2084
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2005 TTTAGTCAATGGACATCGATGCTCGATATCTTAGAATGGACACTCGATGTAATCGGCGTT 2064
Query 2085 ACATACCGAAGACTTGACGGCAGTACTCAAGTTACAGATAGACAAACCATAGTCGACACA 2144
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2065 ACATACCGAAGACTTGACGGCAGTACTCAAGTCACAGATAGACAAACCATAGTCGACACA 2124
Query 2145 TTCAACAACGATAAGTCGATATTCGCATGTCTCTTGTCAACTCGAGCAGGTGGACAAGGT 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 TTCAACAACGATAAGTCGATATTCGCATGTCTCTTGTCAACTCGAGCAGGTGGACAAGGT 2184
Query 2205 CTTAATTTAACCGGAGCGGATACAGTCATTATTCACGATATGGATTTTAATCCACAGATT 2264
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2185 CTGAATTTAACCGGAGCAGATACGGTCATTATTCACGATATGGATTTTAATCCACAGATT 2244
Query 2265 GATCGGCAAGCTGAAGATCGTTGCCATCGTATTGGTCAAACAAAACCAGTCACTATCTTC 2324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 GATCGGCAAGCTGAAGATCGTTGCCATCGTATTGGTCAAACAAAACCAGTCACTATCTTC 2304
Query 2325 AGACTGGTGACGAAATCGACGGTTGATGAGAACATCTACGAGATAGCGAAGCGGAAACTA 2384
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2305 AGACTGGTGACAAAATCGACGGTTGATGAGAACATCTACGAGATAGCAAAGCGGAAACTT 2364
Query 2385 GTTCTTGATGCGGCGGTTCTAGAGTCCGGAGTTCACGTAGATGACAACGGAGACACGCCT 2444
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2365 GTTCTTGATGCGGCGGTTCTAGAGTCTGGAGTTCACGTAGATGACAACGGAGACACGCCT 2424
Query 2445 GAGAAAACCATGGGAGAGATTCTTGCTTCTCTTCTCATGGGATAACATTATTGTTACCTT 2504
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2425 GAGAAAACCATGGGAGAGATTCTCGCTTCTCTTCTCATGGGATAACATTATTGTTACCTT 2484
Query 2505 TTTT-GTTTTGAGGTAAAATTAGTCAAGAAACGAAGTTAA-TGTGTTATTCTAAACATGT 2562
|||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 2485 TTTTTGTTTTGAGGTAAAATTAGTCAAGAAACGAAGTTAAATGTGTTATTCGAAACATGT 2544
Query 2563 GTAACCACTAGCTATTATTAGACTTAAATTTAATAG 2598
|||| ||||||||||| ||||||||||||||||
Sbjct 2545 CTAAC-ACTAGCTATTA---GACTTAAATTTAATAG 2576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98691824795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5