BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02130.1
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484136 jgi|Araly1|484136|fgenesh2_kg.5__128__AT2G02130.1 665 0.0
> Ahg484136 jgi|Araly1|484136|fgenesh2_kg.5__128__AT2G02130.1
Length=473
Score = 665 bits (360), Expect = 0.0
Identities = 442/479 (92%), Gaps = 16/479 (3%)
Strand=Plus/Plus
Query 37 CACTTCTTTCGAAATCTCTCTCTATCCCTCTCAAAAATGAAGCTCTCTGTGCGTTTTATC 96
||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| |||
Sbjct 2 CACTTCTTTTGAAATCTCTCTCTAT--CTCT-AAAAATGAAGCTCTCTATGCGTTTGATC 58
Query 97 TCCGCTGCTCTTC-TCTTGTTCATGGTATTCATTGCCACAGGGATGGGTCCAGTCACCGT 155
|| |||| || || || |||||||||||||| | ||||| ||||||||||||||||| ||
Sbjct 59 TCGGCTGTTC-TCATCATGTTCATGGTATTCGTCGCCACTGGGATGGGTCCAGTCACTGT 117
Query 156 GGAGGCACGCACGTGTGAGTCAAAAAGCCATAGGTTCAAGGGTCCATGTGTGAGCACACA 215
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 118 GGAGGCACGCACGTGTGAGTCAAAGAGCCATAGGTTCAAGGGTCCATGCGTGAGCACACA 177
Query 216 CAACTGTGCAAACGTGTGCCACAACGAAGGCTTCGGCGGAGGTAAATGCCGTGGATTCCG 275
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 178 CAACTGTGCAAACGTGTGCCACAACGAAGGCTTTGGCGGAGGTAAATGCCGTGGATTCCG 237
Query 276 TCGTCGTTGCTACTGCACAAGACACTGCTGATCCATCCATTCTCATGACTCAAATCTTCG 335
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
Sbjct 238 TCGTCGTTGCTACTGCACCAGACATTGCTGATCCATCCATTCTCATGACTCAA-TCTTTG 296
Query 336 ATCCATCGTCAGTGTGTTACTTCTTTCTTATCTAAATCTTCCGTACGGTACCATGTCGTA 395
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 297 ATCCATCGTC-GTGTGTTACTTCTTTCTTATCTAAATCTTCCGTACAGTACCATGTAGTA 355
Query 396 CCGTACATGAGTGTTTTC-TCGAATAAGTCATTGGT-TT--GTGTGTTTCCGGTTTTAAT 451
|||||||||||||| ||| || |||||||| ||||| || |||||||||||||||||||
Sbjct 356 CCGTACATGAGTGTGTTCCTC-AATAAGTCTTTGGTGTTTTGTGTGTTTCCGGTTTTAAT 414
Query 452 GTAATGTTAAATCAATTAATGGCTTT-TA--ATA-TATTGTATTATGGATCTCAATCTA 506
|||||||||||||||| ||||||||| || ||| ||||||||||||||||||||||||
Sbjct 415 GTAATGTTAAATCAATGAATGGCTTTGTATTATACTATTGTATTATGGATCTCAATCTA 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19421194801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5