BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02140.1
Length=530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935955 jgi|Araly1|935955|scaffold_500146.1 453 6e-127
> Ahg935955 jgi|Araly1|935955|scaffold_500146.1
Length=265
Score = 453 bits (245), Expect = 6e-127
Identities = 257/263 (98%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 26 TTTGTATCTTAATCTCTTTAAAAATGAAGCTCTCTCTGCGTTTGATCTCAGCCCTTCTCA 85
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGTATCTTAATCTCTTAAAAAATGAAGCTCTCTCTGCGTTTGATCTCAGCCCTTCTCC 60
Query 86 TGTCGGTCATGCTCCTCTTCGCCACAGGAATGGGTCCTGTGGAAGCAAGAACTTGTGAGT 145
| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCTCAGTCATGCTCCTCTTTGCCACAGGAATGGGTCCTGTGGAAGCAAGAACGTGTGAGT 120
Query 146 CACCAAGTAACAAGTTCCAAGGAGTTTGTCTCAACTCACAGAGCTGTGCCAAAGCTTGCC 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACCAAGTAACAAGTTCCAAGGAGTTTGTCTCAACTCACAGAGCTGTGCCAAAGCTTGCC 180
Query 206 CTAGCGAAGGTTTTTCAGGCGGTCGATGTAGTAGTCTCCGTTGCTACTGCTCCAAAGCCT 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAGCGAAGGTTTTTCAGGCGGTCGATGTAGTAGTCTCCGTTGCTACTGCTCCAAAGCCT 240
Query 266 GCTAATTTATCAACAAATCATTT 288
|||||||||||||||||||||||
Sbjct 241 GCTAATTTATCAACAAATCATTT 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19306728034
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5