BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02147.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322553 jgi|Araly1|322553|fgenesh1_pm.C_scaffold_5000097 366 3e-101
> Ahg322553 jgi|Araly1|322553|fgenesh1_pm.C_scaffold_5000097
Length=249
Score = 366 bits (198), Expect = 3e-101
Identities = 226/240 (94%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTCTCTCTGCGTTTTCTCTCAGTCCTTCTCCTGATCGCTTTCATGGTTCTTGCT 60
|||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGAAGCTCTCTTTGCGTTTTCTCTCAGTCCTTCTCCTCATCTCTTTCATGGTTCTTGCT 60
Query 61 ACCACTGCAGAGGTGAGTCCGTTGGATAATAAAATATGCAAGACAAGGAGTGATCGTTTC 120
||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||
Sbjct 61 ACCACTGCAGAGGTGAGTCCGGTGGATAACAAAATATGTAAGACACGGAGTGATCGTTTC 120
Query 121 TCAGGAGTGTGCATAAGCACAAACAATTGTGCCATCATCTGCCAACAATTCGAGCACTTT 180
||||| |||||| | ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCAGGGGTGTGCTTGAGCACTAACAATTGTGCTATCATCTGCCAACAATTCGAGCACTTT 180
Query 181 GATGGCGGTCACTGCGAATTCGATGGAGCCTTCCGTCGTTGTATGTGCACCAAACAATGT 240
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 181 GATGGCGGTCACTGCGAATTCGACGGAGCCCTCCGTCGTTGTATGTGCACCAAACAATGT 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5