BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02148.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484139 jgi|Araly1|484139|fgenesh2_kg.5__131__AT2G02150.1 1993 0.0
> Ahg484139 jgi|Araly1|484139|fgenesh2_kg.5__131__AT2G02150.1
Length=3261
Score = 1993 bits (1079), Expect = 0.0
Identities = 1411/1555 (91%), Gaps = 87/1555 (6%)
Strand=Plus/Plus
Query 31 GTGTGGAGTTTGGAGCCAGGTTCGGAGATCT-CTGTCACCGTACGATAATTCTCAGGTAC 89
|||||||||| |||||||||||||||||||| ||||||||||||||| | | | |
Sbjct 1738 GTGTGGAGTTCGGAGCCAGGTTCGGAGATCTCCTGTCACCGTACGAT-A-----A--T-C 1788
Query 90 GGATCCAGGAAGAAATGGGAGCTAGGGTTCAAGTACAACATTACAATTTAGGATCATCTG 149
| | |||||||||||||||||||| ||| || ||||||||||| |||||| |||
Sbjct 1789 ---T-C----AGAAATGGGAGCTAGGGTTCGAGTGCAGCATTACAATTTGGGATCAGCTG 1840
Query 150 ATTCCTACATCGCTACTTCTCTCCACGATCTCAACTCCGTCGATGGTCCGCCGAGAGATA 209
|||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1841 ATTCCTACATCGGTACTTCTCTCCATGATCTCAACTCCGTTGATGGTCCGCCGAGAGATA 1900
Query 210 TCGACGGTATCGGAGGCGCCGTTGGTCGTGACGGCGATAGTTTAGATAATGACGGCGATT 269
||||||||||| ||||| || ||| | | |||||||||||| ||||||||||||||||
Sbjct 1901 TCGACGGTATCAGAGGCTCC---GGT-G-G-CGGCGATAGTTTGGATAATGACGGCGATT 1954
Query 270 CCTCTTCTGCGGACTGTATGCATGAATCATACAGAAACTCTATGCAAAT---C------G 320
||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 1955 CCTCTTCTGCGGATTGTATGCATGAATCATACAGAAACTCTATGCAAATCCACAGTGAAG 2014
Query 321 GAGTAGAAGAAGGTGGATCTAACATGGAGAAC--A--A-----AGGATCTGCTTACATTA 371
|||| ||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 2015 GAGTTGAAGAAGGTGGATCTAACATGGAGAACAAAGGACCTGTAGGATCTGCTTACATTA 2074
Query 372 TGTTAAACATTGAAGATGTTTCACCGATTGAAGCAGCAAGAGGGAGGTTTCTGCAAATCA 431
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 2075 TGTTAAACATTGAAGATGTTTCACCGATTGAAGCAGCACGAGGGAGGTTTCTACAAATAA 2134
Query 432 TATTGGACTACTTTATTAGCCAACATGTGATTGAAGTCTG-TGAGAGCAAACGTGATCAT 490
| |||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||
Sbjct 2135 TCTTGGACTACTTTATTAGCCAACATGTGATTGAAGTC-GCTGAGAACAAGCGTGATCAT 2193
Query 491 GATGTGGATTCAGGAGGACGTGATAGTAATAGTAAAGTGAAGAGGAAGTCGGATGATACG 550
|| |||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 2194 GAAACGGATTCAGGAGGACGTGATAATAGTAATAAAGTGAAGAGGAAGTCGGATGATACA 2253
Query 551 CGATATGAAGGTGATCCGAGTTTTGCGTTACCGTTGATGTATATTGCAAATTTGTATGAG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2254 CGATATGAAGGTGATCCGAGTTTTGCGTTACCGTTGATGTATATTGCAAATTTGTATGAG 2313
Query 611 ACTTTAGTTGGTGAAGCAAATGTGAGGCTTGCTTCATTGAATGGAATAAGGGATAAGACT 670
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2314 ACTTTAGTTGGTGAAGCAAATGTGAGGCTTGCTTCATTGAATGGAATAAGAGATAAGACG 2373
Query 671 ATTGGAGTAGCTCTTGAAGCTGCTGGTGGCTTGTATAGGAAATTAACTAAGAAGTTTCCT 730
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2374 ATTGGAGTAGCTCTTGAAGCAGCTGGTGGCTTGTATAGGAAATTAACTAAGAAGTTTCCT 2433
Query 731 AAGAAAGGTACTTGCATGTACAGGAGAAGAGAACTGGCAACTTCAGTTGAAACAAGGACA 790
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2434 AAGAAAGGTACTTGCATGTACAGGAGAAGAGAACTAGCAACTTCAGTTGAAACAAGGACA 2493
Query 791 AGATTTCCAGAATTGGTAATACATGAAGAGAAACGAGTTCGCTTTGTGGTGGTTAATGGT 850
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2494 AGATTTCCAGAATTGGTAATACATGAAGAGAAACGAGTTCGCTTTGTGGTGGTCAATGGT 2553
Query 851 TTGGATATTGTTGAAAAGCCA-AGTGATTTGCCTATTGAAGAAGCTGAATGGTTTAAGCG 909
||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 2554 TTGGATATTGTTGAAAAGCCAGA-TGATTTGCCTATTGAAGATGCTGAATGGTTTAAGCG 2612
Query 910 ATTAACAGGCCGTAATGAAGTGGCTATCTCTGCTAGAGATTATAAATTCTACTGCCCTCG 969
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 2613 ATTAACAGGCCGTAATGAAGTGGCTATCTCTGCAAGAGACTATAAATTCTATTGCCCTCG 2672
Query 970 ACGCAAGCATAGGCGTCTTCAGAATTCTGTCTCCAGCATCAATGGCTTGCCTACATTTCC 1029
|||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2673 ACGCAAGCATAGGCGTGTTCAAAATTCTGTCTCCAGCATCAGTGGCTTGCCTACATTTCC 2732
Query 1030 AGGTATAGACTCTTCAACGTTAGCTAATACACAAGGATTTCGC---G--AA-GA---TCA 1080
|||||||||||||||||||||||||| |||||||||||||||| | || || |||
Sbjct 2733 AGGTATAGACTCTTCAACGTTAGCTAGTACACAAGGATTTCGCTCCGTTAATGAAGATCA 2792
Query 1081 AAGCCAACAACAACACACTCCTTCTCCTTCCAAACATCATATGTCATCTTTGTCTCATCA 1140
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2793 AAGTCAACAACAACACACTCCTTCTCCTTCCAAACATCACATGTCATCTTTGTCTCATCA 2852
Query 1141 ATTTCATCAATCTATTCACCAGAGCCACCAACACCATCAATCTATATACCAAAGTCAACA 1200
|||||| ||||||||| ||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 2853 ATTTCACCAATCTATTAACCAGAGCCACCACCACCATCAATCTATTTACCAAAATCAACA 2912
Query 1201 CGCAGCCACACACTATCCCAGTCAGAACCATCAATGTGACCCTGAACTATCTCACAC--A 1258
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 2913 CGCAGCCACACATTTTCCCGGTCAGAACCATCAATGTGACCCTGAACTATCTCACACCCA 2972
Query 1259 C-A---A--AT----------------GGCTTGCTTGCAACCCCTCACTGGAGGCCATGT 1296
| | | || |||||||||||||||||||||||||||||||||
Sbjct 2973 CCAGTCACCATCTATTTCACATCACATGGCTTGCTTGCAACCCCTCACTGGAGGCCATGT 3032
Query 1297 AATGCCAAATAGTCCGGCGAAATTTTGTGACCAATGTGGAGCACAGTACTTGAGAGAGAC 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3033 AATGCCAAATAGTCCGGCGAAATTTTGTGACCAATGTGGAGCACAGTACTTGAGAGAGAC 3092
Query 1357 ATCCAAATTCTGCTCAGAGTGTGGTTCCAAGAGACTCGGGATATAGTGAAGAGAGACAAA 1416
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 3093 ATCCAAATTCTGCTCAGAGTGTGGCTCCAAGAGACTCGGGATATAGTGAAGAGACACAAA 3152
Query 1417 TCTTTGCTCGAGTCTCGGGTT-GAAATATCGTTTTGA-GGCACATATTTTACGAGAAGTT 1474
||||||||| |||||| |||| ||| | ||||| || |||| | |||| ||||||||||
Sbjct 3153 TCTTTGCTCTAGTCTCAGGTTAGAATT-TCGTT--GAAGGCAGAAATTT-ACGAGAAGTT 3208
Query 1475 TAGTGTTTCAGGTTGGTGAAGTCTGAGCTAGTATATATTTACTTGGCCCGGAAGT 1529
|||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 3209 TAGTGTTTCAGGTTGGTGAAGTCTGAGCTAGTATAT-TT-ACTTGGCCCGGAAGT 3261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5