BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02160.1 Length=2521 Score E Sequences producing significant alignments: (Bits) Value Ahg484140 jgi|Araly1|484140|fgenesh2_kg.5__132__AT2G02160.1 3367 0.0 > Ahg484140 jgi|Araly1|484140|fgenesh2_kg.5__132__AT2G02160.1 Length=2464 Score = 3367 bits (1823), Expect = 0.0 Identities = 2292/2505 (91%), Gaps = 86/2505 (3%) Strand=Plus/Plus Query 7 aaaaaaaaaaaCTTTTAGGCTTAGCTTTAAAGGGcacacacacacaGTCGCGAGTTTCTC 66 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2 AAAAAAAAAAACTTTTAGGCTTAGCTTTAAAGGGCACACACACACAATCGCGAGTTTCTC 61 Query 67 TCTGGTGCGCTCTTTGTGGCGGCTCGtcttcttcttcttcttcCACGGGACTCTCTC-TG 125 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 62 TCTGGTTCGCTCTTTGTGGCGGCTCGTCTTCTTCTTCTTTTTCCACGGGACTCTCTCTTG 121 Query 126 AATCGGTGATTTTCGATCTTCCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 185 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 122 -ATCGGTGATTATCGATCTTTCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 180 Query 186 AGAGATTCAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 245 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATAGATTTAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 240 Query 246 AACATG-AGCAGAAGAAGCAATCAGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 304 | || | || ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 AGCA-GCAGGAGAAGAAGCAATCGGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 299 Query 305 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAA 364 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAG 359 Query 365 TGCGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTG 424 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 TGTGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCAAGGGATTGCTATTATTGGTTG 419 Query 425 AATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTCCTTTGGAGGGATTGTTG 484 |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 420 AATGGAAATTGTATGAATCCCAAATGTGGCTTTCGGCATCCTCCTTTGGAGGGATTGTTG 479 Query 485 GGAAATCAAGGAGGTGCTCCTGCTGTTTCTGTACAGCCAA-TACATGCAACCGCGCAGCA 543 ||||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||| Sbjct 480 GGAAATCAAGGAGGTGCTCCTGCTGGTTCTGTACAGCCAACT-CATGCAACTGCGCAGCA 538 Query 544 T-CCTAGTGTTGCAAAACAGCCTGTTCCATGTCTGTTCTTTCAAAAAGGCATGTGTATGA 602 | || |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 539 TTCCG-GTGTTGCAAAACAGCCGGTTCCGTGTGTGTTCTTTCAAAAAGGCATGTGTATGA 597 Query 603 AAGGAGATATGTGTTCGTTCTTGCACACGCCGAATCCTGCTGCGTATAAAAAACAGCAT- 661 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||| || | Sbjct 598 AAGGAGATATGTGTTCATTCTTGCACACACCGAATCCTGCTGCTTATAAAAAACTGCTTT 657 Query 662 CCTGTAGAAGCTAAGCCTGCTACTGATCCTCAGTGTTCTAAAAAGCCAATTGAAAATAAC 721 || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 658 CC-GTAGAAGCTAAGCCTGCTGCTGATCCTCAGTTTTCTAAAAAGCCAATTGAAAATAAC 716 Query 722 ACTGAGGAGAAGAAACTTCCTGATGTTAATCTCTCAAAGGTGGTTAAAGGACATACTGAC 781 || | |||||||||| || |||||| |||||||||||||| |||||||| |||| |||| Sbjct 717 ACCGGGGAGAAGAAATTTGCTGATGCTAATCTCTCAAAGGCGGTTAAAGCACATGTTGAC 776 Query 782 ATATCGGCTGCACCAAGAGTCGCTTCTACTGGACTAAGGGATAGTAGAAGTGTAGAGGGA 841 ||||||||||| ||||||||| | ||| |||| ||||||||||||||| | ||||||||| Sbjct 777 ATATCGGCTGCGCCAAGAGTCACATCTGCTGGCCTAAGGGATAGTAGACGCGTAGAGGGA 836 Query 842 TACATTCCA-AACCATGTGGGATATGAGCCTGTTGTGCAGAGAAAGGGTCCAGGA-TTCC 899 || ||||| ||| || |||||||||| |||||||| |||| ||||| | | ||| |||| Sbjct 837 TATGTTCCAGAAC-ATATGGGATATGACCCTGTTGTACAGAAAAAGGTTACGGGAGTTCC 895 Query 900 CTTCTTTTACTGAAGGAGGCCATTCTACTCAGTTGCTTCAGAAATATGGATCTGATGATA 959 ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 896 -TTCCTTTACTGAAGGAGGCCATTCGACTCAGTTGCTTCATAAATATGGATCTGATGATA 954 Query 960 ATAACAGTTTCCACAATGGTAAGGATGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1019 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 955 ATAACAGTTTCCACAATGGTAAGGACGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1014 Query 1020 TTGATGTTCTTGTGGATAATGAGGCT-GGAGATTCTGAGTATTATCATGTTGAAGATCGA 1078 |||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||| Sbjct 1015 TTGATGTTCTTGTGGATAATGAGGCTAGG-GATTCAGAGTATTATCGTGTTGAAGATCGA 1073 Query 1079 TATGGACGTAGAAGTCAGGAGAGAGGGAACTCAG--A--G--TATGACCCTGATTTCAGT 1132 |||||||| |||||||||||| |||||||||| | | | |||||||||||||||||| Sbjct 1074 TATGGACGGAGAAGTCAGGAGGGAGGGAACTCTGTGAATGAATATGACCCTGATTTCAGT 1133 Query 1133 GCAATTGCTGATGGTGATAAAGAAGCATTACGTGAACAACGTTTTGATTCATATGATCGG 1192 ||||| ||||||| ||| | |||||||| | ||| || ||||||||| ||||||||| | Sbjct 1134 GCAATAGCTGATGATGA-A--GAAGCATTCCATGATCAGCGTTTTGATCCATATGATCAG 1190 Query 1193 AGGGAAGACAGGG--G-ATGGGGCCATCGTCGAGTTTCTTCTGAGAGAG-AGGATCGTTT 1248 |||||||||||| | ||||||| | |||||||||||||||||||||| || ||| || Sbjct 1191 AGGGAAGACAGGTATGCATGGGGCAACCGTCGAGTTTCTTCTGAGAGAGGAG-ATCATTC 1249 Query 1249 GGACAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATACTGGAATCGGATCTGAG 1308 || ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| Sbjct 1250 AGAAAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATATTGGCATCAGATCTGAG 1309 Query 1309 ATATCGTTTGGCTAAGCAGAGAAAAGGCAATGGTATGAGATTATCAGTAGGAGGCCATGA 1368 ||||||||||||||||||||| |||| ||||||| |||||| |||| ||| ||||||| Sbjct 1310 ATATCGTTTGGCTAAGCAGAGGAAAGTCAATGGTGTGAGAT---CAGTTGGAAGCCATGA 1366 Query 1369 CTATGCTGCTCCTGACTCTTC-GATGGACAGAGGATATAGAGAGTCTCGTAGGGATACAC 1427 ||||| ||||||||||||||| | |||| |||||||||||||| |||||||||||||||| Sbjct 1367 CTATGGTGCTCCTGACTCTTCAG-TGGAAAGAGGATATAGAGACTCTCGTAGGGATACAC 1425 Query 1428 CGAGGGAAAACTCCATTAGCAGTAGTCGTCTTCAGGGTAGAATTAAGCTTCGTGAGAGAA 1487 ||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct 1426 TGAGGGAAAACTCCATTAGCAGCAGCCGTCTACAGGGTAGAATTAAGCTTTGTGAGAGAA 1485 Query 1488 GCAATGGCGAAGAGGGTCACCACTTTGACAGGAGAAGTGAGAGGGGAAGGGACAGAAGCG 1547 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1486 GCAATGGCGACGAGGGTCACCACTTTGACAGAAGAAGTGAGAGGGGAAGGGACAGAAGCG 1545 Query 1548 AGTTACCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1607 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 AGTTATCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1605 Query 1608 GTGGTAATCAGGAAAGAGGTTTCGGGGCTCCATGGGCGAGAAGAAGAGAAATGGAAGACG 1667 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1606 GTGGTAATCAGGAAAGAGGTTTCCGGGCTCCATGGGCGAGAAGAAGAGAAATGGAAGAAG 1665 Query 1668 AAAGAAAATCAGCTCCTAAAAGCA--GCAGA--------G-A---G-GA--AA-GTAAGC 1709 |||||||| ||||||||||||||| ||||| | | | || || |||||| Sbjct 1666 AAAGAAAACCAGCTCCTAAAAGCATTGCAGAAACTAAAAGCACCAGAGAGGAAAGTAAGC 1725 Query 1710 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1726 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1785 Query 1770 CAAGG-GATTCATTTGCAGCTCCATTGCCTTTCAGTGAGATTCTCAAGAGaaaaaaaGCG 1828 || || ||||||||||||||||| |||||||||||||||||||| |||||||||| |||| Sbjct 1786 CA-GGAGATTCATTTGCAGCTCCTTTGCCTTTCAGTGAGATTCTGAAGAGAAAAAGAGCG 1844 Query 1829 GCCGCATCTGGTGGTAGCAGAAACAACAACAAGGACGAGACGATATCGAAAGAGGAAGCT 1888 || |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1845 GCTGCATCTGGTGGTAGCAGACACAACAACAAGGACGAGACGATAACGAAAGAGGAAGCT 1904 Query 1889 GGAGATGAGATCAAACTCATAACCGAAGAGAAAACCGAGGTTGTCTCTGAACCCAAAGCT 1948 |||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1905 GGAGATGAGACCAAACTCATAACAGAAGAGAAAACCGAGGTTGTCTCGGAACCCAAAGCT 1964 Query 1949 GAAGTAGAAGAAGAAGGAACGGTTATGGAGGAAGAAGAAATTGTTGGGGAGGAAGTGTAT 2008 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1965 GAAGTAGAAGAAGAAGGAACGATTATGGAGGAAGAAGAAGTTGTTGGGGAGGAAGTGTAT 2024 Query 2009 GAAGGAAATGAAGACGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2068 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2025 GAAGGAAATGAAGATGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2084 Query 2069 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2085 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2144 Query 2129 TACGCGGCtgaggaaggagaagaagaagcaacagaaggaggtgaaggtgagggtgaagaa 2188 || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 2145 TATGCGGCTGAGGAAGGAGAAGAAGAAGTGACAGAAGGAGGTGAAGCTGAGGGTGAAGAA 2204 Query 2189 gacattgagaagaagaCCGTTGAGATGTTGTCATAAAAGAAGAAAGAGTAACACAGAAAA 2248 ||||||||||||||||| ||||||||||||||||||||||| ||| | | | Sbjct 2205 GACATTGAGAAGAAGACTGTTGAGATGTTGTCATAAAAGAA-AAA-A--A-----G---- 2251 Query 2249 AAGCTTTTGCTCCTTTCctctctctctctctctctGCTTAATGCAAATGGAGAGAAGAAG 2308 ||||| |||||||||||| ||||||| ||||||||||||||| |||| |||| Sbjct 2252 ---CTTTTACTCCTTTCCTCTGA-TCTCTCT----GCTTAATGCAAATGG-GAGA-GAAG 2301 Query 2309 TCGTAGAGCAAATAATA--CGAGTCGCTTTT-ATCTTTGGCTTGGCACTGAGTTTTAGTC 2365 |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 2302 TCGTTGAGCAAATAATATGCGAGTCGCTTTTTATCTTTGGCTTGGCACTGAGTTTTAGTC 2361 Query 2366 GCCATTTTTTCTTACTGTGATTTCTTAAATTGTAACACTAGAGAAGAA-A--GAAAAGAA 2422 |||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| Sbjct 2362 GCCATTTTTTCTTATTATGATTTCTTAAATTGTAACACTAGAGAAGAAGAAAGAAAAGAA 2421 Query 2423 ACAATGGTACAAGTACACCATATCATATTTCTGAGTTTTACTGTT 2467 || |||||||||||||| ||| ||||||||||| |||| ||||| Sbjct 2422 ACGATGGTACAAGTACAACAT--CATATTTCTGATTTTTTCTGTT 2464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95035161275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5