BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02160.1
Length=2521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484140 jgi|Araly1|484140|fgenesh2_kg.5__132__AT2G02160.1 3367 0.0
> Ahg484140 jgi|Araly1|484140|fgenesh2_kg.5__132__AT2G02160.1
Length=2464
Score = 3367 bits (1823), Expect = 0.0
Identities = 2292/2505 (91%), Gaps = 86/2505 (3%)
Strand=Plus/Plus
Query 7 aaaaaaaaaaaCTTTTAGGCTTAGCTTTAAAGGGcacacacacacaGTCGCGAGTTTCTC 66
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2 AAAAAAAAAAACTTTTAGGCTTAGCTTTAAAGGGCACACACACACAATCGCGAGTTTCTC 61
Query 67 TCTGGTGCGCTCTTTGTGGCGGCTCGtcttcttcttcttcttcCACGGGACTCTCTC-TG 125
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 62 TCTGGTTCGCTCTTTGTGGCGGCTCGTCTTCTTCTTCTTTTTCCACGGGACTCTCTCTTG 121
Query 126 AATCGGTGATTTTCGATCTTCCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 185
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 122 -ATCGGTGATTATCGATCTTTCTAGGGTTTCGATCTGAAACCTTGCGATCTACTTGAAAG 180
Query 186 AGAGATTCAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 245
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATAGATTTAGAAATTTCCAAGTAATAATAATGTTTGCGCCTGCGACTCAACCGCAACAGC 240
Query 246 AACATG-AGCAGAAGAAGCAATCAGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 304
| || | || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCA-GCAGGAGAAGAAGCAATCGGAGACTGTTTCATCTGCTGAAGAAGATGCTTTGAAG 299
Query 305 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGAACACCGATTGCGTTTACTTTCTCGCTTCTCCTTTAACCTGCAAGAAGGGACCTGAG 359
Query 365 TGCGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCGAGGGATTGCTATTATTGGTTG 424
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 TGTGAGTATCGCCACAGTGAGTATGCGCGTATGAACCCAAGGGATTGCTATTATTGGTTG 419
Query 425 AATGGAAACTGTTTGAATCCCAAATGTGGATTTCGGCATCCTCCTTTGGAGGGATTGTTG 484
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 AATGGAAATTGTATGAATCCCAAATGTGGCTTTCGGCATCCTCCTTTGGAGGGATTGTTG 479
Query 485 GGAAATCAAGGAGGTGCTCCTGCTGTTTCTGTACAGCCAA-TACATGCAACCGCGCAGCA 543
||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 480 GGAAATCAAGGAGGTGCTCCTGCTGGTTCTGTACAGCCAACT-CATGCAACTGCGCAGCA 538
Query 544 T-CCTAGTGTTGCAAAACAGCCTGTTCCATGTCTGTTCTTTCAAAAAGGCATGTGTATGA 602
| || |||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 539 TTCCG-GTGTTGCAAAACAGCCGGTTCCGTGTGTGTTCTTTCAAAAAGGCATGTGTATGA 597
Query 603 AAGGAGATATGTGTTCGTTCTTGCACACGCCGAATCCTGCTGCGTATAAAAAACAGCAT- 661
|||||||||||||||| ||||||||||| |||||||||||||| |||||||||| || |
Sbjct 598 AAGGAGATATGTGTTCATTCTTGCACACACCGAATCCTGCTGCTTATAAAAAACTGCTTT 657
Query 662 CCTGTAGAAGCTAAGCCTGCTACTGATCCTCAGTGTTCTAAAAAGCCAATTGAAAATAAC 721
|| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 658 CC-GTAGAAGCTAAGCCTGCTGCTGATCCTCAGTTTTCTAAAAAGCCAATTGAAAATAAC 716
Query 722 ACTGAGGAGAAGAAACTTCCTGATGTTAATCTCTCAAAGGTGGTTAAAGGACATACTGAC 781
|| | |||||||||| || |||||| |||||||||||||| |||||||| |||| ||||
Sbjct 717 ACCGGGGAGAAGAAATTTGCTGATGCTAATCTCTCAAAGGCGGTTAAAGCACATGTTGAC 776
Query 782 ATATCGGCTGCACCAAGAGTCGCTTCTACTGGACTAAGGGATAGTAGAAGTGTAGAGGGA 841
||||||||||| ||||||||| | ||| |||| ||||||||||||||| | |||||||||
Sbjct 777 ATATCGGCTGCGCCAAGAGTCACATCTGCTGGCCTAAGGGATAGTAGACGCGTAGAGGGA 836
Query 842 TACATTCCA-AACCATGTGGGATATGAGCCTGTTGTGCAGAGAAAGGGTCCAGGA-TTCC 899
|| ||||| ||| || |||||||||| |||||||| |||| ||||| | | ||| ||||
Sbjct 837 TATGTTCCAGAAC-ATATGGGATATGACCCTGTTGTACAGAAAAAGGTTACGGGAGTTCC 895
Query 900 CTTCTTTTACTGAAGGAGGCCATTCTACTCAGTTGCTTCAGAAATATGGATCTGATGATA 959
||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 896 -TTCCTTTACTGAAGGAGGCCATTCGACTCAGTTGCTTCATAAATATGGATCTGATGATA 954
Query 960 ATAACAGTTTCCACAATGGTAAGGATGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1019
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 955 ATAACAGTTTCCACAATGGTAAGGACGCAGATGACGTTTTAAGAGAGTCGTCTCCTGGGT 1014
Query 1020 TTGATGTTCTTGTGGATAATGAGGCT-GGAGATTCTGAGTATTATCATGTTGAAGATCGA 1078
|||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||
Sbjct 1015 TTGATGTTCTTGTGGATAATGAGGCTAGG-GATTCAGAGTATTATCGTGTTGAAGATCGA 1073
Query 1079 TATGGACGTAGAAGTCAGGAGAGAGGGAACTCAG--A--G--TATGACCCTGATTTCAGT 1132
|||||||| |||||||||||| |||||||||| | | | ||||||||||||||||||
Sbjct 1074 TATGGACGGAGAAGTCAGGAGGGAGGGAACTCTGTGAATGAATATGACCCTGATTTCAGT 1133
Query 1133 GCAATTGCTGATGGTGATAAAGAAGCATTACGTGAACAACGTTTTGATTCATATGATCGG 1192
||||| ||||||| ||| | |||||||| | ||| || ||||||||| ||||||||| |
Sbjct 1134 GCAATAGCTGATGATGA-A--GAAGCATTCCATGATCAGCGTTTTGATCCATATGATCAG 1190
Query 1193 AGGGAAGACAGGG--G-ATGGGGCCATCGTCGAGTTTCTTCTGAGAGAG-AGGATCGTTT 1248
|||||||||||| | ||||||| | |||||||||||||||||||||| || ||| ||
Sbjct 1191 AGGGAAGACAGGTATGCATGGGGCAACCGTCGAGTTTCTTCTGAGAGAGGAG-ATCATTC 1249
Query 1249 GGACAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATACTGGAATCGGATCTGAG 1308
|| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 1250 AGAAAGAAGGGTTTACGCAGAAGATGAGAGATCAGAGAACATATTGGCATCAGATCTGAG 1309
Query 1309 ATATCGTTTGGCTAAGCAGAGAAAAGGCAATGGTATGAGATTATCAGTAGGAGGCCATGA 1368
||||||||||||||||||||| |||| ||||||| |||||| |||| ||| |||||||
Sbjct 1310 ATATCGTTTGGCTAAGCAGAGGAAAGTCAATGGTGTGAGAT---CAGTTGGAAGCCATGA 1366
Query 1369 CTATGCTGCTCCTGACTCTTC-GATGGACAGAGGATATAGAGAGTCTCGTAGGGATACAC 1427
||||| ||||||||||||||| | |||| |||||||||||||| ||||||||||||||||
Sbjct 1367 CTATGGTGCTCCTGACTCTTCAG-TGGAAAGAGGATATAGAGACTCTCGTAGGGATACAC 1425
Query 1428 CGAGGGAAAACTCCATTAGCAGTAGTCGTCTTCAGGGTAGAATTAAGCTTCGTGAGAGAA 1487
||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct 1426 TGAGGGAAAACTCCATTAGCAGCAGCCGTCTACAGGGTAGAATTAAGCTTTGTGAGAGAA 1485
Query 1488 GCAATGGCGAAGAGGGTCACCACTTTGACAGGAGAAGTGAGAGGGGAAGGGACAGAAGCG 1547
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1486 GCAATGGCGACGAGGGTCACCACTTTGACAGAAGAAGTGAGAGGGGAAGGGACAGAAGCG 1545
Query 1548 AGTTACCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1607
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 AGTTATCTTCTCAGGGTAGACTCCGAGATAGAATTAAGGGTAGGTTAGAGGAAAACCATA 1605
Query 1608 GTGGTAATCAGGAAAGAGGTTTCGGGGCTCCATGGGCGAGAAGAAGAGAAATGGAAGACG 1667
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1606 GTGGTAATCAGGAAAGAGGTTTCCGGGCTCCATGGGCGAGAAGAAGAGAAATGGAAGAAG 1665
Query 1668 AAAGAAAATCAGCTCCTAAAAGCA--GCAGA--------G-A---G-GA--AA-GTAAGC 1709
|||||||| ||||||||||||||| ||||| | | | || || ||||||
Sbjct 1666 AAAGAAAACCAGCTCCTAAAAGCATTGCAGAAACTAAAAGCACCAGAGAGGAAAGTAAGC 1725
Query 1710 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 CAGAGCCATCTCTTGGGAAGAGGAAAAGCTTTGAAGAGGATCATCATAGTCATAAGCGAT 1785
Query 1770 CAAGG-GATTCATTTGCAGCTCCATTGCCTTTCAGTGAGATTCTCAAGAGaaaaaaaGCG 1828
|| || ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 1786 CA-GGAGATTCATTTGCAGCTCCTTTGCCTTTCAGTGAGATTCTGAAGAGAAAAAGAGCG 1844
Query 1829 GCCGCATCTGGTGGTAGCAGAAACAACAACAAGGACGAGACGATATCGAAAGAGGAAGCT 1888
|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1845 GCTGCATCTGGTGGTAGCAGACACAACAACAAGGACGAGACGATAACGAAAGAGGAAGCT 1904
Query 1889 GGAGATGAGATCAAACTCATAACCGAAGAGAAAACCGAGGTTGTCTCTGAACCCAAAGCT 1948
|||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1905 GGAGATGAGACCAAACTCATAACAGAAGAGAAAACCGAGGTTGTCTCGGAACCCAAAGCT 1964
Query 1949 GAAGTAGAAGAAGAAGGAACGGTTATGGAGGAAGAAGAAATTGTTGGGGAGGAAGTGTAT 2008
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1965 GAAGTAGAAGAAGAAGGAACGATTATGGAGGAAGAAGAAGTTGTTGGGGAGGAAGTGTAT 2024
Query 2009 GAAGGAAATGAAGACGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2068
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 GAAGGAAATGAAGATGAGCAAGCTTATGAAGGCGATGAGCTAAACGGAGAGTACTATTAC 2084
Query 2069 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 GAAGAAGGATATGAAGAAGAGGGAGGAGAATACGCTTACGAAGAAGGTGAAGAAGTAGTT 2144
Query 2129 TACGCGGCtgaggaaggagaagaagaagcaacagaaggaggtgaaggtgagggtgaagaa 2188
|| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2145 TATGCGGCTGAGGAAGGAGAAGAAGAAGTGACAGAAGGAGGTGAAGCTGAGGGTGAAGAA 2204
Query 2189 gacattgagaagaagaCCGTTGAGATGTTGTCATAAAAGAAGAAAGAGTAACACAGAAAA 2248
||||||||||||||||| ||||||||||||||||||||||| ||| | | |
Sbjct 2205 GACATTGAGAAGAAGACTGTTGAGATGTTGTCATAAAAGAA-AAA-A--A-----G---- 2251
Query 2249 AAGCTTTTGCTCCTTTCctctctctctctctctctGCTTAATGCAAATGGAGAGAAGAAG 2308
||||| |||||||||||| ||||||| ||||||||||||||| |||| ||||
Sbjct 2252 ---CTTTTACTCCTTTCCTCTGA-TCTCTCT----GCTTAATGCAAATGG-GAGA-GAAG 2301
Query 2309 TCGTAGAGCAAATAATA--CGAGTCGCTTTT-ATCTTTGGCTTGGCACTGAGTTTTAGTC 2365
|||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2302 TCGTTGAGCAAATAATATGCGAGTCGCTTTTTATCTTTGGCTTGGCACTGAGTTTTAGTC 2361
Query 2366 GCCATTTTTTCTTACTGTGATTTCTTAAATTGTAACACTAGAGAAGAA-A--GAAAAGAA 2422
|||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2362 GCCATTTTTTCTTATTATGATTTCTTAAATTGTAACACTAGAGAAGAAGAAAGAAAAGAA 2421
Query 2423 ACAATGGTACAAGTACACCATATCATATTTCTGAGTTTTACTGTT 2467
|| |||||||||||||| ||| ||||||||||| |||| |||||
Sbjct 2422 ACGATGGTACAAGTACAACAT--CATATTTCTGATTTTTTCTGTT 2464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95035161275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5