BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02170.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322556 jgi|Araly1|322556|fgenesh1_pm.C_scaffold_5000100 2222 0.0
> Ahg322556 jgi|Araly1|322556|fgenesh1_pm.C_scaffold_5000100
Length=1479
Score = 2222 bits (1203), Expect = 0.0
Identities = 1393/1482 (94%), Gaps = 24/1482 (2%)
Strand=Plus/Plus
Query 90 ATGGATTACGAACGAATCGGAAAGACCCAGG-T--TACTAGTAGCGGCGGCGGATTTTCT 146
||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||
Sbjct 1 ATGGATTACGAACGAATCGGAAAGACCCAGGTTACTACTACTAGCGGCGGTGGATTTTCT 60
Query 147 CCGGGGAAGTTAAGGAGTATGCTTCTTCTAGGTGTTGATagaaagaagaatgaagaagaa 206
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 61 CCGGGGAAGTTAAGAAGTATGCTTCTTCTTGGTGTTGATAGAAAGAAGAAT---GAAGAA 117
Query 207 gaaTCAACTCCTACAATGAGATCTGGGTCTAATCAAATTGATGACCCTAGGGTTTATGTT 266
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAATCTACTCCTACAATGAGATCTGGGTCTAATCAAATTGATGACCCTAGGGTTTATGTT 177
Query 267 GCTAGTGGATTAGATGATTGCAAAGATGTTGATGTTGTGAGTGAGATTACTGATTGTTCT 326
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 GCTAGTGGATTAGATGATTGCAAAGATGTTGATGTTGTGAGTGAAATTACTGATTGTTCT 237
Query 327 ACTTCAGGGATAGCTAGATCGATTAGTTTGGGTCTTCAAGAGTAT-----TC-TGATTAT 380
|||| ||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 238 GCTTCTGGGATTGCTAGATCGATTAGTTTGGGTCTTCAAGAGTATCCGAGTCTTGATTAT 297
Query 381 GATAATGTGAATGAGATCAAGAGTGTTTCTGCATCATCTGTCTTTGAGTTTCAAAAGACT 440
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 298 GAGAATGTGAATGAGATTAAGAGTGTTTCTGCTTCATCTGTCTTTGAGTTTCAAAAGACT 357
Query 441 GAGAAGGAAAAAGTTAATCAAAGAATGCCTATTAGATCATTCTCTAAACCAGCTCCATCT 500
||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 GAGAAGGAAAAGGCTAATCAAAGAATGCCTATTAGATCGTTCTCTAAACCAGCTCCATCT 417
Query 501 AAATGGGATGATGCTCAGAAATGGATTGCTAGTCCTACGGCTAACCGACCGAAGACTGGA 560
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 418 AAATGGGATGATGCTCAGAAATGGATTGCTAGCCCAACGGCTAACCGACCAAAGACTGGA 477
Query 561 CAGGTTCAGGTTCCGGGTTCGAAGAAAGGGCCTAGCTTTGGTCGTCAGTCTTCTATGAAG 620
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 478 CAGGTTCAGGTTCCGGGGTCGAAGAAAGGGCCAAGCTTTGGTCGCCAGTCTTCTATGAAG 537
Query 621 ATTGTTGAAGTTGCTGAACATAGA------G---T---GGTTGAAGAGCCTGATACAAAG 668
||||||||||||||||| || ||| | | ||||||||||||||||||||||
Sbjct 538 ATTGTTGAAGTTGCTGATCAAAGAGCGGGTGTATTCGCGGTTGAAGAGCCTGATACAAAG 597
Query 669 AGAATAGATGTAAGCCAAGTGAAAAAGGATATGGGAAACAAGTTTGGTAGCTGGGAAGTT 728
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 CGGATAGATGTAAGCCAAGTGAAAAAGGATATGGGAAACAAGTTTGTTAGCTGGGAAGTC 657
Query 729 GATTCGTACACTACCGTGGATTCATATGTCAAACCGGTTCTTATGGTTGAGAACTCTATT 788
||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GATTCATACACTACCGCGGATTCATATGTTAAACCGGTTCTTATGGTTGAGAACTCTATT 717
Query 789 GTAGAATCAGCAACTGAAGTTAATCTCAGCCGTCATGACTCGTCAGTCGCAACTGCGTTT 848
||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||
Sbjct 718 GTAGAATCAGCAACTGAAGTTAATCTCAGTCGACATGACTCATCAGTCGCAACTGGGTTT 777
Query 849 GCTCAACCGCCTTCAACGGCAAGGTCTGTGTCAATGAGAGACATGGGAACTGAAATGACT 908
|| |||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||
Sbjct 778 GCCCAACCGCCTTCAACAGCAAGATCTGTATCGATGAGAGACATGGGAACCGAAATGACT 837
Query 909 CCTATAGCGAGCCAAGAACCTTCTAGAAACGGGACACCGATTAGGGCAACAACGCCAATA 968
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 838 CCTATAGCGAGCCAAGAACCTTCTAGAAACGGGACACCAATCAGGGCAACAACGCCAATC 897
Query 969 CGAAGTCCTATATCTTCTGAACCTTCAAGTCCAGGCAGACAAGCATCAGCTTCTCCTATG 1028
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 898 CGAAGTCCTATATCTTCTGAACCTTCAAGTCCAGGGAGACAAGCTTCAGCTTCTCCTATG 957
Query 1029 AGTAACAAGGAACTGTCAGAGAAAGAGCTTCAAATGAAAACTAGGAGAGAGATAATGGTG 1088
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACTAACAAGGAACTGTCGGAGAAAGAGCTTCAAATGAAAACTAGGAGAGAGATAATGGTG 1017
Query 1089 TTGGGTACTCAACTTGGTAAATTTAACATTGCTGCTTGGGCTAGCAAGGAGGATGAAGAT 1148
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1018 TTAGGTACTCAACTTGGTAAATTAAACATTGCTGCTTGGGCTAGCAAAGAGGATGAAGAT 1077
Query 1149 AAAGACGCATCCACATCATTAAAGACCAAAGCTTCTCTACAAACTTCTAAAAGTGTTTCT 1208
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAAGACGCTTCCACATCACTAAAGACCAAAGCTTCTCTACAAACTTCTAAAAGTGTTTCT 1137
Query 1209 GAAGCTCGTGCTACAGCGTGGGAGGAAGCGGAAAAAGCTAAGCACATGGCTAGGTTCAGA 1268
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GAATCTCGTGCTACCGCGTGGGAGGAAGCGGAAAAAGCTAAGCACATGGCTAGGTTCAGA 1197
Query 1269 CGCGAAGAGATGAAGATTCAAGCATGGGAGAATCATCAGAAGGCGAAATCTGAAGCCGAG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CGCGAAGAGATGAAGATTCAAGCATGGGAGAATCATCAGAAGGCGAAATCTGAAGCCGAG 1257
Query 1329 ATGAAGAAAACCGAGGTTAAAGTTGAGAGGATTAAGGGACGAGCACAAGACCGGTTGATG 1388
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 ATGAAGAAAACCGAGGTGGAAGTTGAGAGGATTAAGGGACGAGCGCAAGACCGGTTGATG 1317
Query 1389 AAGAAACTCGCTACAATCGAGCGCAAAGCAGAGGAAAAGCGAGCAGCGGCTGAAGCAAAG 1448
|||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1318 AAGAAACTAGCTGCGATCGAGCGCAAGGCAGAGGAGAAGCGAGCAGCGGCTGAAGCAAAG 1377
Query 1449 AAGGATCATCAGGCAGCTAAAACAGAGAAACAAGCTGAACAAATCCGAAGAACAGGCAAA 1508
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AAGGATCGTCAAGCAGCTAAAACAGAGAAACAAGCTGAACAAATCCGAAGAACAGGCAAA 1437
Query 1509 GTACCTTCATTGTTGTTCTCTTGCTTTAGCTTTTGTTCTTAA 1550
|||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 GTACCTTCATTGTTGTCCTCTTGCTTTAGCTTTTGTTCTTAA 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5