BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02220.1
Length=3147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484148 jgi|Araly1|484148|fgenesh2_kg.5__140__AT2G02220.1 4479 0.0
> Ahg484148 jgi|Araly1|484148|fgenesh2_kg.5__140__AT2G02220.1
Length=3109
Score = 4479 bits (2425), Expect = 0.0
Identities = 2841/3044 (93%), Gaps = 20/3044 (1%)
Strand=Plus/Plus
Query 1 ATGCGTGTTCATCGTTTTTGTGTGATCGTCATCTTCCTCACAGAGTTACTATGTTTCTTC 60
||||||||| ||||||| ||||||||||||||| |||||| |||| ||||||| ||||||
Sbjct 1 ATGCGTGTTAATCGTTTGTGTGTGATCGTCATCGTCCTCATAGAGCTACTATGCTTCTTC 60
Query 61 TATTCCTCGGAATCTCAGACCACC-TCCAGGTGCCATCCACATGACCTCGAAGCCTTACG 119
| ||||||||||||||| |||||| | || ||||||| |||||||| |||| ||||||||
Sbjct 61 TGTTCCTCGGAATCTCAAACCACCGT-CACGTGCCATTCACATGACTTCGATGCCTTACG 119
Query 120 TGACTTCATAG-CACATCTCGAACCAAAACCAGATGGTTGGATCAATTCTTCTTCTTCTA 178
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 TGACTTCATAGCCA-ATCTCGAGCCAAAACCAGATGGTTGGATCAATTCTTCTTCTTCTA 178
Query 179 CAGACTGCTGCAACTGGACCGGAATCACCTGCAATTCAAACAACACCGGAAGAGTTATTA 238
|||| ||||| || ||| ||||||||||||||||| |||||||||| |||| || | ||
Sbjct 179 CAGATTGCTGTAATTGGTCCGGAATCACCTGCAATACAAACAACACAAGAAGGGTCACTA 238
Query 239 GATTGGAGCTTGGGAACAAAAAGCTGTCGGGGAAGTTGTCTGAATCTCTCGGGAAGCTAG 298
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 239 AATTGGAGCTTGGGAACAAGAAGCTGTCGGGGAAGTTGTCTGAATCTCTTGGGAAGTTAG 298
Query 299 ATGAGATTAGGGTTCTTAATCTCTCTCGAAACTTCATCAAAGATTCGATCCCTCTTTCGA 358
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 299 ATGAGATTAGGGTTCTTAATCTCTCTCGGAACTTCTTCAAAGATTCGATCCCTCTTTCGA 358
Query 359 TTTTCAACTTGAAGAATCTACAAACTCTTGATTTGAGCTCTAATGATCTCTCCGGCGGAA 418
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 359 TTTTTAACTTGAAGAATCTACAGACTCTTGATTTGAGCTCTAATGATCTCTCCGGTGAAA 418
Query 419 TCCCAACAAGTATAAATCTCCCAGCTCTGCAAAGTTTTGATCTTTCTTCAAATAAATTCA 478
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 419 TCCCAAGAAGTATAAATCTTCCAGCTCTGCAAAGTTTTGATCTTTCTTCAAATAAACTCA 478
Query 479 ATGGGTCGCTTCCGTCTCATATCTGCCATAACTCTACTCAAATTAGGGTTGTGAAACTTG 538
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGGTTCGCTTCCTTCTCATATCTGCCATAACTCTACTCAAATTAGGGTTGTGAAACTTG 538
Query 539 CGGTGAACTACTTCGCCGGAAACTTCACTTCCGGGTTTGGGAAATGTGTCTTGCTTGAGC 598
||| |||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 539 CGGAGAACTACTTCGCTGGAAATTTCACTTCTGGGTTTGGGAACTGTGTTTTGCTTGAGC 598
Query 599 ATCTCTGTCTTGGTATGAACGATCTTACTGGTAACATCCCTGAGGATTTGTTTCATCTCA 658
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 599 ATCTTTGTCTTGGTATGAATGATCTTACTGGTAATATCCCTGAGGATTTGTTTCATCTCA 658
Query 659 AAAGATTGAATCTTTTAGGGATTCAAGAGAATCGTCTCTCTGGTTCGTTGAGTCGTGAGA 718
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 659 AAAGTTTGAATCTTTTAGGGATTCAAGAGAATCGTATCTCTGGTTCGTTGAGTCGTGAGA 718
Query 719 TTAGGAATCTCTCAAGTCTTGTTCGTCTTGATGTTTCTTGGAATTTGTTTTCCGGTGAAA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TTAGGAATCTCTCAAGTCTTGTTCGTCTTGATGTTTCTTGGAATTTGTTTTCTGGTGAAA 778
Query 779 TCCCTGATGTGTTCGACGAATTGCCTCAGTTAAAGTTTTTCTTAGGTCAGACCAATGGAT 838
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 779 TCCCTGATGTGTTCGACGAAATGCCTAAGTTAAAGTTTTTCTTAGGTCAGACCAATGGAT 838
Query 839 TCATTGGAGGAATACCTAAATCGTTGGCGAATTCACCGAGTTTGAATCTGCTTAACTTGA 898
||||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 839 TCATTGGAGGAATCCCGAAAACGTTGGCGAATTCGCCGAGTTTGAATCTGCTTAACTTGA 898
Query 899 GGAACAATTCTTTATCGGGTCGTTTGATGTTGAATTGTACGGCGATGATTGCTTTGAACT 958
||||||| || ||||| |||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 899 GGAACAACTCGTTATCCGGTCCTTTGCGGTTGAATTGCACGGCGATGATTGCTTTGAACT 958
Query 959 CTCTTGATTTAGGTACCAATAGATTCAATGGGAGGTTACCTGAGAATCTACCGGATTGCA 1018
|||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||| |
Sbjct 959 CTCTTGATTTAGGTACTAATAGATTCAATGGGCCGTTGCCTGAGAACCTACCGGATTGTA 1018
Query 1019 AGCGGTTAAAGAACGTTAACCTCGCGAGGAACACCTTCCATGGACAAGTACCAGAGAGTT 1078
||||||||||||||||||| || ||| | ||| ||||||||||||||| ||||||||||
Sbjct 1019 AGCGGTTAAAGAACGTTAATCTTGCGCGAAACGTCTTCCATGGACAAGTGCCAGAGAGTT 1078
Query 1079 TCAAGAACTTCGAGAGCTTATCTTACTTCTCGTTATCGAATTCGAGTTTGGCTAATATCT 1138
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCAAGAACTTCCAGAGCCTATCTTACTTCTCGTTATCGAATTCGAGTTTGGCTAATATCT 1138
Query 1139 CTTCAGCGCTTGGGATACTTCAGCATTGCAAGAACTTGACGACTTTGGTTCTTACATTGA 1198
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1139 CTTCTGCGCTTGGGATACTTCAGCATTGCAAGAACTTGACGACTCTGGTTCTTACATTGA 1198
Query 1199 ATTTCCATGGAGAGGCTTTACCCGATGATTCAAGTCTTCATTTCGAGAAGCTTAAGGTGC 1258
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1199 ATTTTCATGGAGAGGCTTTACCCGATGATTCGAGTCTTCATTTCGAGAAGCTTAAAGTGC 1258
Query 1259 TTGTAGTGGCGAATTGTAGGCTTACTGGTTCGATGCCGAGGTGGTTAAGCTCGAGTAATG 1318
| || ||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1259 TAGTTGTGGCGAATTGCAGGCTTACTGGTTCAATGCCGAGTTGGTTAAGCTCGAGCAATG 1318
Query 1319 AACTTCAGTTGTTGGATCTTTCTTGGAACCGTTTAACCGGCGCTATCCCGAGCTGGATTG 1378
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1319 ATCTTCAGTTGTTGGATCTTTCTTGGAACCGTTTAACAGGAGCTATCCCGAGCTGGATTG 1378
Query 1379 GTGA-CTTCAAGGCTCTGTTCTACTTGGATTTATCTAACAACTCGTTTA-CAGGAGAGAT 1436
|| | ||||| | ||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1379 GT-AGTTTCAAAGATCTGTTCTACTTGGATTTATCTAACAACTCGTTTAGC-GGAGAAAT 1436
Query 1437 CCCTAAGAGCTTAACTAAGTTAG-AGAGTCTCACTAGCCGTAATATCTCAGTCAATGAGC 1495
||| |||||||||||| |||| | |||||||| ||||||||||||||||| ||||||| |
Sbjct 1437 CCCCAAGAGCTTAACTCAGTT-GCAGAGTCTCGCTAGCCGTAATATCTCATTCAATGAAC 1495
Query 1496 CATCTCCTGATTTCCCGTTCTTT-ATGAAAAGAAACGAGAGCGCGAGAGCGTTGCAATAC 1554
|||| || ||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1496 CATCACCAGATTTCCCGTT-TTTCATGAAAAGGAACGAGAGCGCGAGAGCGTTGCAATAC 1554
Query 1555 AATCAGATTTTCGGGTTCCCGCCAACGATTGAGCTTGGTCATAACAATCTCTCTGGACCT 1614
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1555 AATCAGATATTCGGGTTTCCGCCAACGATTGAGCTCGGTCATAACAATCTCTCTGGACCT 1614
Query 1615 ATTTGGGAGGAGTTTGGTAATCTGAAGAAGCTTCATGTGTTTGAT-TTGAAATGGAATGC 1673
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 1615 ATTTGGGAGGAGTTTGGTAATCTAAAGAAGCTTCATGTGTTTGATCTT-AAATGGAAT-A 1672
Query 1674 A-TTATCTGGATCAATACCTAGCTCGCTTTCTGGTATGACGAGCTTGGAAGCTCTTGATC 1732
| ||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1673 AGTTATCAGGATCCATTCCTAGCTCTCTTTCGGGTATGACGAGCTTGGAAGCTCTTGATC 1732
Query 1733 TCTCTAATAACCGTCTTTCGGGTTCGATCCCGGTTTCTCTGC-AACAGCTCTCGTTTCTG 1791
| |||||||||||||||||||| || ||||||| |||||||| ||| |||||||||||||
Sbjct 1733 TGTCTAATAACCGTCTTTCGGGCTCTATCCCGGCTTCTCTGCAAAC-GCTCTCGTTTCTG 1791
Query 1792 TCGAAGTTCAGTGTTGCTTATAACAATCTCTCGGGAGTAATACCTTCCGGTGGTCAGTTT 1851
|| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1792 TCCAAGTTCAGTGTTGCTAATAACAATCTCTCGGGAGTAATCCCTTCTGGTGGTCAGTTT 1851
Query 1852 CAGACGTTTCCAAACTCGAGCTTTGAGAGTAACCA-TCTCTGCGGGGAACACAGATTCCC 1910
||||| ||||||||||||||||| |||||||| || |||||| ||||||||||| |||||
Sbjct 1852 CAGACATTTCCAAACTCGAGCTTCGAGAGTAA-CAGTCTCTGTGGGGAACACAGGTTCCC 1910
Query 1911 CTGTTCTGAAGGTACTGAGAGTGCATTGATCAAACGGTCAAGAAGAAGCAGAGGAGGTGA 1970
|||||||||||||||||| || | ||||||||||||||||||||||||| ||||| |||
Sbjct 1911 CTGTTCTGAAGGTACTGACAGAACGTTGATCAAACGGTCAAGAAGAAGCAAAGGAGCTGA 1970
Query 1971 CATTGGAATGGCGATTGGGATAGCGTTTGGTTCGGTTTTTCTTTTGACTCTTCTCTCGTT 2030
||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||| |||
Sbjct 1971 CATTGGAATGGCGATTGGGATCGCGTTTGGTTCGGTTTTCCTTCTCACTCTTCTCTTGTT 2030
Query 2031 GATTGTGTTGCGTGCTCGTAGACGGTCAGGAGAAGTTGATCCGGAGATAGAAGAATCCGA 2090
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2031 GATTGTGTTGCGTGCTCGTAGACGGTCAGGGGAAGTTGATCCGGAGATAGAAGAATCCGA 2090
Query 2091 GAGCATGAATCGTAAAGAACTCGGAGAGATTGGATCTAAGCTTGTGGTTTTGTTTCAGAG 2150
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 GAGCATGAATCGCAAAGAACTCGGAGAGATTGGATCTAAGCTTGTGGTTTTGTTTCAGAA 2150
Query 2151 CAATGATAAAGAGCTCTCTTATGATGACCTTTTGGACTCAACAAATAGTTTTGATCAAGC 2210
|||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 2151 CAATGATAAAGAGCTCTCCTATGATGATCTTTTAGACTCAACAAACAGTTTTGATCAAGC 2210
Query 2211 TAACATCATTGGCTGTGGCGGGTTTGGTATGGTTTACAAAGCAACGTTACCAGACGGTAA 2270
||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 2211 TAACATCATTGGCTGTGGCGGGTTTGGTATGGTTTACAAAGCAACCTTACCTGATGGAAA 2270
Query 2271 GAAAGTTGCGATCAAGAAGTTATCCGGTGATTGCGGTCAAATCGAAAGAGAATTCGAAGC 2330
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 2271 GAAAGTTGCGATCAAGAAGTTATCCGGAGATTGTGGTCAGATCGAAAGAGAATTCGAAGC 2330
Query 2331 AGAAGTTGAAACACTCTCAAGAGCACAGCATCCAAATCTTGTTCTTCTCCGAGGATTCTG 2390
||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 2331 AGAGGTTGAAACACTCTCAAGAGCACAGCATCCGAACCTTGTTCTTCTTCGAGGATTCTG 2390
Query 2391 TTTCTACAAAAACGACCGGCTTTTAATCTACTCGTATATGGAAAACGGAAGCTTAGACTA 2450
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2391 TTTCTACAAAAATGACCGGCTTTTGATCTATTCGTATATGGAAAACGGAAGCTTAGACTA 2450
Query 2451 TTGGCTACACGAGCGTAACGACGGTCCAGCGTTGTTGAAGTGGAAAACACGTCTTAGAAT 2510
|||||||||||||||||||||||||||||| || ||||| |||| ||| || ||||||||
Sbjct 2451 TTGGCTACACGAGCGTAACGACGGTCCAGCTTTATTGAAATGGAGAACTCGGCTTAGAAT 2510
Query 2511 CGCTCAAGGTGCTGCAAAAGGGTTACTTTACTTGCATGAAGGGTGTGATCCTCATATCTT 2570
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2511 CGCTCAAGGCGCTGCAAAAGGGTTACTTTATTTGCATGAAGGGTGTGATCCTCATATCTT 2570
Query 2571 ACACCGCGATATTAAATCGAGTAATATTCTTCTCGACGAGAATTTCAACTCTCATTTAGC 2630
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2571 ACACCGCGATATTAAATCGAGCAATATTCTTCTTGACGAGAATTTCAACTCTCATTTAGC 2630
Query 2631 GGATTTCGGACTCGCAAGGCTGATGAGTCCTTACGAGACGCATGTAAGTACTGATTTGGT 2690
||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2631 AGATTTCGGACTTGCGAGGCTGATGAGTCCTTACGAGACACATGTAAGTACAGATTTGGT 2690
Query 2691 TGGAACTTTAGGTTACATTCCTCCGGAATACGGGCAAGCTTCGGTTGCTACTTACAAAGG 2750
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2691 TGGGACTTTAGGTTACATTCCTCCAGAATACGGGCAAGCTTCGGTTGCTACTTACAAAGG 2750
Query 2751 CGATGTGTATAGTTTCGGAGTTGTGCTTCTCGAGCTTTTAACCGATAAAAGACCGGTGGA 2810
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 CGATGTTTACAGTTTCGGAGTTGTGCTTCTCGAGCTTTTAACCGATAAAAGACCGGTGGA 2810
Query 2811 TATGTGTAAACCGAAAGGGTGTAGGGATCTGATCTCGTGGGTCGTCAAGATGAAGCATGA 2870
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2811 TATGTGTAAACCGAAAGGATGTAGGGATCTGATCTCCTGGGTCGTCAAGCTGAAGCATGA 2870
Query 2871 GAGTCGAGCAAGCGAGGTTTTCGATCCGTTAATATACAGTAAAGAGAATGATAAAGAGAT 2930
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2871 GAATCGAGCAAGCGAGGTTTTCGATCCGTTAATATACAGTAAAGAGAATGATAAAGAGAT 2930
Query 2931 GTTTCGGGTTCTCGAGATTGCTTGTTTATGTTTAAGCGAAAACCCGAAACAGAGGCCAAC 2990
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2931 GTTTCGGGTTCTCGAGATTGCTTGTTTATGTTTAAGCGAAAACCCGAAACATAGACCAAC 2990
Query 2991 GACTCAACAGTTAGTCTCTTGGCTTGATGATGTCTAGAAGAAAG 3034
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2991 GACTCAACAGTTAGTCTCTTGGCTTGATGATGTCTAGAAGAAAG 3034
Score = 122 bits (66), Expect = 1e-26
Identities = 72/75 (96%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 3067 TGTAGGGAGTGATTTTCATACTTTTGAGATACAATGTAAATAGTTTTCAGATAATAATTT 3126
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 3035 TGTAGGAAGTGATTTTCATACTTTTGAGATACAATGTAAATAGTTTCCAGAGAATAATTT 3094
Query 3127 GTTTCTTCGTTTTCT 3141
|||||||||||||||
Sbjct 3095 GTTTCTTCGTTTTCT 3109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118879654645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5