BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02230.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484149 jgi|Araly1|484149|fgenesh2_kg.5__141__AT2G02230.1 1266 0.0
> Ahg484149 jgi|Araly1|484149|fgenesh2_kg.5__141__AT2G02230.1
Length=1093
Score = 1266 bits (685), Expect = 0.0
Identities = 919/1024 (90%), Gaps = 47/1024 (5%)
Strand=Plus/Plus
Query 41 TCAGATT-CGAAAACAATGGAACAAATTCACGGCGGCGATTCGAATTCCGGCGGCGGAGG 99
||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 25 TCAGATTCCAAAAACAATGGAACAAATTCACGGCGGAGATTCGAATTCCGGCGGC----- 79
Query 100 AGGAGGAAGTAGCCGGAACGATGAGATTTCTGTGACGAGAGCGTCGCGTTTCGATGCATT 159
||||||||||| |||||||||||| ||||||| ||||||||||| |||||| ||||
Sbjct 80 ----GGAAGTAGCCGAAACGATGAGATTGCTGTGACCAGAGCGTCGCGGTTCGATACATT 135
Query 160 GCCGGAAGATTGTATCTCGAAGGTGATTTCACATACGAGTCCTCGGGACGCTTGTGTTGT 219
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 136 GCCGGAAGATTGTATCTCGAAGGTGATTTCACATACGAGTCCACGAGACGCTTGTGTTGT 195
Query 220 GGCTTCGGTTTCGAAATCGGTGAAATCTGCGGCGCAATCGGATTTGGTTTGGGAGATGTT 279
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 196 GGCTTCGGTTTCGAAAACGGTGAAATCGGCGGCGCAATCGGATTTGGTGTGGGAGATGTT 255
Query 280 TCTTCCGTCGGAGTACTCGTCTCTTGTTCTTCA---ATCAGCGAATCAT-TTATCGAAAA 335
||||||||||||||| |||||||||||| ||| ||| ||||||| | ||||||||||
Sbjct 256 TCTTCCGTCGGAGTATTCGTCTCTTGTTGTTCCTCGATCGGCGAATC-TCTTATCGAAAA 314
Query 336 AGGAGATCTTTTTATCTCTCGCTGATAACTCTGTTTTGGTTGAAAATGGCAAAAAGAGCT 395
||||||| ||||||||||||||| || | ||||||||| ||||| |||||||||||||||
Sbjct 315 AGGAGATTTTTTTATCTCTCGCTAATGATTCTGTTTTGATTGAAGATGGCAAAAAGAGCT 374
Query 396 TTTGGGTGGAGAAAGCTAGTGGGAAGAAGTGTTAT-ATGTTATCAGCGATGGAATTGACG 454
||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 375 TTTGGTTGGAGAAAGCTAGTGGGAAGAAGTGTT-TCATGTTATCAGCGATGGATTTGACG 433
Query 455 ATCATTTGGGGAGATTCTCCTGCTTATTGGAAATGGATTACAGTTCCTGAATCTAAGTTT 514
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 434 ATCATTTGGGGAGATTCTCCTGCTTATTGGCAATGGATTACAGTTCCTGAATCTAAGTTT 493
Query 515 GAGAAAGTAGCGGAGTTGCGTAATGTGTGTTGGTTTGAGGTTCGGGGAAAGATAAGTTGT 574
||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 494 GAGAAAGTAGCGGAGTTGCGTAATGTGTGTTGGTTTGAGATTTGGGGGAAGATAAGTTGC 553
Query 575 GGAATGTTATCAAAAGGGACTCATTACTCGGTTTACGTAGTGTTCAAGACAGCAAATGGT 634
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 554 GGAATGTTATCGAAAGGGACTCATTACTCGGTTTACGTAGTGTTCAAGACGGCATATGGT 613
Query 635 AGATCATATGGGTTTGATCTC-GTACCTGTGGAAGCTGGAGTTGGTTTTGTGGGGAAAGT 693
|||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 614 AGATCATATGGGTTTGAT-TCCGTACCTGTGGAAGCTGGAGTTGGTTTTGTGGGCAAAGA 672
Query 694 AGCTACCAAGAAGTCAGTGTATTTT-GAATCCGGTAATGCGGATTCACGGAGCGCTACTT 752
|||||||||||| ||||||| || | ||||| ||| || | ||||||| |||| | ||
Sbjct 673 AGCTACCAAGAAATCAGTGT-TTCTCGAATCTGGTG-TG-G-ATTCACGCAGCGGTT-TT 727
Query 753 CCCATTACTCGGGGATTTCGTATGC-GATGGTTTCTAGAGCGTTTAGGATGAGGCGTCCG 811
||||||||||||||| | || | |||||||||||||||||||||||||||||||
Sbjct 728 GG--TTACTCGGGGATTTCACACGCTGC-GGTTTCTAGAGCGTTTAGGATGAGGCGTCCG 784
Query 812 TGGATGCAGGTTC--agaga-gaagaagaagaagaagttgaaggagaaagGGAGCGTGGT 868
||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 785 TGGCTGCGGGTTCCGAGAGAAGAAGAAGAAGAAGAAGTTGAAGGAGAGAGGGAGCATGGT 844
Query 869 ATGAATGTGGTGGGGCCAAAGGAGAGAGTAGATGGGTGGAGTGAAGTGGAGCTTGGAAAG 928
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 845 AGGAATGTGGAGGGGCCAAAGGAGAGAGTAGATGGGTGGAGTGAAGTGGAGCTTGGAAGG 904
Query 929 TTTTACATTAACAATGGAGGTTGTGGTGATGATGGTAGTGATGAGATTGAGATTAGTATA 988
|||| |||| ||||||||||||||| |||| | || ||| | |||||| |
Sbjct 905 TTTTTCATTGACAATGGAGGTTGTG---ATGA----A---AT-AGA---A-ATTAGTTTG 949
Query 989 ATGGAGACTCAGAATGGAAATTGGAAGAGTGGTTTGATTATTCAGGGAATTGAGATCAGG 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ATGGAGACTCAGAATGGAAATTGGAAGAGTGGTTTGATTATTCAGGGAATTGAGATCAGG 1009
Query 1049 CCTG 1052
||||
Sbjct 1010 CCTG 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5