BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02240.1
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322561 jgi|Araly1|322561|fgenesh1_pm.C_scaffold_5000105 1214 0.0
Ahg935970 jgi|Araly1|935970|scaffold_500161.1 701 0.0
Ahg322562 jgi|Araly1|322562|fgenesh1_pm.C_scaffold_5000106 686 0.0
Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122 470 1e-131
Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220 327 7e-89
Ahg935977 jgi|Araly1|935977|scaffold_500168.1 309 2e-83
> Ahg322561 jgi|Araly1|322561|fgenesh1_pm.C_scaffold_5000105
Length=954
Score = 1214 bits (657), Expect = 0.0
Identities = 816/890 (92%), Gaps = 22/890 (2%)
Strand=Plus/Plus
Query 88 TTTT-CGAAACACAAACGATTTGATCAAAGGCACCGATCGATGATGGGGC--AAT-AT-- 141
|||| | ||| ||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 63 TTTTCCCAAATACACACGATTTGATCAAAGGCACCGATCGATGATGGGGCAAAATCATGG 122
Query 142 C--------A--TAGCGGTGGAGAGATCGTT-TCTCCGGGGACGTCACCTTTTGATGTCT 190
| | ||||||||||||||||||| | ||| ||| ||||||||||||||||||
Sbjct 123 CATTATTGAATCTAGCGGTGGAGAGATCGTTGT-TCCCGGGTCGTCACCTTTTGATGTCT 181
Query 191 TGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGTTG 250
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 182 TGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGAAGCGTGCGTTG 241
Query 251 CTGCATCGGTTTCCAAAACCTTTGAATCAGCTGTTAGTTCCGATTGCGTATGGGACAAGT 310
||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 242 CTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAATTCCGATAGCGTATGGGACAAGT 301
Query 311 TTCTTCCACCGGAGTATGAATCTTTGGTTTCTC-GATCTCGAGTTTTTGCATCGAAGAAG 369
||||||| ||||| ||| |||| ||||||||| | ||||||||||| ||||||||||||
Sbjct 302 TTCTTCCGCCGGATTATTCATCTCTGGTTTCTCAG-TCTCGAGTTTTCGCATCGAAGAAG 360
Query 370 GAACTTTATTTCGCTCTCTGCCACAATCCTGTTCTAATCGAAGATGGCAAAAAGAGCTTT 429
|| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 361 GAGCTTTATTTCGCTCTCTGCCACAATCATGTTCTGATTGAAGATGGCAAAAAGAGCTTT 420
Query 430 TGGTTAGAAAAAGCGAGTGGAAAAAGGTGTATCATGTTATCTTCAAAGGAACTTTGGATC 489
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 421 TGGTTAGAGAAAGCGAGTGGGAAAAGGTGTATTATGTTATCTTCAAAGGAACTTTGGATC 480
Query 490 ACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGAATCTAGATTCAAC 549
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 481 ACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTTCAGTTCCTGAATCTAGATTTGA- 539
Query 550 AAAA-TAGCAGAGCTTCTTGATGTGTGTTGGTTTGAGATTCGTGGCAAGACAAGCGCTCG 608
|||| |||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||
Sbjct 540 AAAAGTAGCAGAGCTTCTTAATGTATGTTGGTTTGAGATTCGGGGCAAGACAAGCACTCG 599
Query 609 TGTGCTATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAAGACGAAAGATCGATG 668
| | |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 600 TTTATTATCTCCTGGAACTCGTTACTCGGCTTACATTGTTTTCAAGACGAATGATGGATG 659
Query 669 TCCTGGATTAGGGCATTTGCCGGTAGAAGTTGGACTTGGTTTAGTGGGACAAGAATCTTC 728
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TCCTGGATTAGGGCATTTGCCGGTAGAAGTTGGACTTGGTTTGGTGGGACAAGAATCTTC 719
Query 729 TAAAAGATTCATATATTTCATAGGGCCTAGGGATCGAAGGGGAAGGAGGGAAACGAGAGA 788
||||| |||||||| ||| | || |||||| | |||||| || ||||||||||||||||
Sbjct 720 CAAAAGGTTCATATACTTCGTTGGACCTAGGAACCGAAGGAGAGGGAGGGAAACGAGAGA 779
Query 789 TGTAACAAAACCAGATCAAAGAGAAGATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTT 848
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTAACGAAACCAGAGCAGAGAGAAGATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTT 839
Query 849 CAATGAAGAAAGGTGTGATGAAATTGAGTTTAGTGTTATTGAGATTAAGTCCCCTTCTTG 908
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 CAATGAAGAAAGTTGTGATGAAATTGAGTTTAGTGTTATTGAGATTAAGTCTCCTTCTTG 899
Query 909 GAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAAAGCC 958
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAAAGCC 949
> Ahg935970 jgi|Araly1|935970|scaffold_500161.1
Length=994
Score = 701 bits (379), Expect = 0.0
Identities = 690/837 (82%), Gaps = 34/837 (4%)
Strand=Plus/Plus
Query 146 GCGGTGGAGAGATCG-T-TTCTCCGGGGACGTCACCTTTTGATGT-CTTGCCGGAGGATT 202
|||| |||| ||||| | ||| || || ||||||| || ||| | |||||| |||||||
Sbjct 58 GCGGAGGAGGGATCGATGTTC-CC-AGGCCGTCACCATTCGAT-TACTTGCCAGAGGATT 114
Query 203 GCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGTTGCTGCATCGGTTT 262
|||||||||||||||||||||| |||| ||||||||| ||||| ||||| || || ||||
Sbjct 115 GCATCTCCAACATAATCTCTTTTACAACTCCACGAGACGCGTGTGTTGCAGCTTCTGTTT 174
Query 263 CCAAAACCTTTGAATCAGCTGT-TAGTTCCGATTGCGTATGGGACAAGTTTCTTCCACCG 321
| |||||||||||||| ||||| | |||||| ||||||||| ||||||||||| |||
Sbjct 175 CGAAAACCTTTGAATCGGCTGTCCA-ATCCGATACCGTATGGGAGAAGTTTCTTCCGCCG 233
Query 322 GAGTATGAATCTTTGGTTTCTCGATCTCGAG-TTT-TTGCATCGAAGAAGGAACTTTATT 379
|| ||| ||||||||| ||| ||| |||| ||| ||| || |||||||| || ||||
Sbjct 234 GATTATTCCTCTTTGGTTCCTCAATCGCGAGTTTTCTTG--TCCAAGAAGGATCTCTATT 291
Query 380 TCGCTCTCTGCCAC-AATCCTGTTCTAATCGAAGATGGCAAAAAGAGCTTTTGGTTAGA- 437
|| ||||||||||| || ||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 292 TCTCTCTCTGCCACGAA-CCTCTTCTAATCGAAGACGGCAAAAAGAGCTTCTGGTTAGAG 350
Query 438 AAAAGCGAGTGGAAAAAGGTGTATCATGTTATCTTCAAAGGAACTTTGGATCACATGGGG 497
|||| ||||||| ||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 351 AAAA-CGAGTGGGAAAAGGTGTATCATGTTATCTCCAAAGGAAATGTGGATCACATGGGT 409
Query 498 AAGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGAATCTA-GATTCAACAAAATAG 556
||||||||| | ||||||| ||||||||||||| ||||| ||| | || || || ||
Sbjct 410 TAGTAGTCCTCAGTATTGGCGATGGATTTCAATTTCTGAAGCTAGGTTTGAA-GAAGTAC 468
Query 557 CAGAGCTTCTTGATGTGTGTTGGTTTGAGATTCGTGGCAAG-ACAAGCGCTCGTGT-GCT 614
|| ||||||| | ||||| ||||||||| ||||||| || | || ||||| | ||
Sbjct 469 CAAAGCTTCTCAACGTGTGCTGGTTTGAGGTTCGTGG-TAGAATGAGTACTCGT-TACCT 526
Query 615 ATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAAGACGAAAGATCGATGTCCTGG 674
|||||||||||||| |||||| | |||||||||||||||| | ||||||| |||||| ||
Sbjct 527 ATCTCCTGGAACTCATTACTCTGTTTACATTGTGTTCAAGCCAAAAGATCAATGTCCCGG 586
Query 675 ATTAGGGCATTTGCCGGTAGAAGTTGGACTTGGTTTAGTGGGACAAGAATC-TTCTAAAA 733
||| ||| |||| || || ||||| | | || || |||||||||||| | || | |||
Sbjct 587 ATTGGGGGATTTACCAATAAAAGTTAAAGTCGGATTGGTGGGACAAGAA-CTTTTTCAAA 645
Query 734 GATTCATA-TATTTCATAGGGCCTAGGGATCGAAGGGGAAGGAGGGAAACGAGAGATGTA 792
|||||||| ||| | ||||||| ||||| |||| | |||| |||| ||| || |||
Sbjct 646 GATTCATACGCTTT-GTTGGGCCTATGGATCAAAGGTGTGGGAGAGAAATGAGCGACGTA 704
Query 793 ACAAAACCAGATCAAAGAGAAGATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTTCAAT 852
|| | |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 705 ACGAGACCAGAGGAAAGAGAAGATGGATGGATGGAAGCTGAGCTTGGTGAATTTTTCAAT 764
Query 853 GAAGA-AAGGTGTGATGA--A-ATTG-AGTTTAGTGTTATTGAGATTAAGTCCCCTTCTT 907
||| | ||| |||||||| | ||| || | |||||| ||||||||||||| |||| ||
Sbjct 765 GAA-ATAAGTTGTGATGATCATGTTGAAG-TAAGTGTTGTTGAGATTAAGTCTCCTTATT 822
Query 908 GGAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAAA-GCCAGTAA 963
|||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 823 GGAAAAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTACGAAGACGCCCGTAA 879
> Ahg322562 jgi|Araly1|322562|fgenesh1_pm.C_scaffold_5000106
Length=891
Score = 686 bits (371), Expect = 0.0
Identities = 658/793 (83%), Gaps = 33/793 (4%)
Strand=Plus/Plus
Query 189 CTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGT 248
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 114 CTTACCGGAAGATTGCATTTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGT 173
Query 249 TGCTGCATCGGTTTCCAAAACCTTTGAATCAGCTGTTAGTTCCGATTGCGTATGGGACAA 308
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 174 TGCTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAGTTCCGATAGCGTATGGGACAA 233
Query 309 GTTTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGATCT-CGAGTTTTTGCATCGAAGA 367
||||||||| ||||| ||| |||| | || ||| || | ||||||||| |||||||||
Sbjct 234 GTTTCTTCCGCCGGATTATTCATCTCTAATTCCTCCAT-TGCGAGTTTTTTCATCGAAGA 292
Query 368 AGGAACTTTATTTCGCTCTCTGCCACAATCCTGT-TCTAATCGAAGATGGCAAAAAGAGC 426
|||| || ||||||||| | ||| | |||||||| | ||||||| ||||| |||||||||
Sbjct 293 AGGAGCTCTATTTCGCTATATGCGATAATCCTGTGT-TAATCGACGATGGTAAAAAGAGC 351
Query 427 TTTTGGTTAGAAAAAGCGAGTGG-AAAAAGGTGTATCATGTTATCTTCAAAGGAAC-T-T 483
|| |||||||| |||| || ||| |||||| ||||||||||||||| | ||| || | |
Sbjct 352 TTCTGGTTAGAGAAAGGGAATGGGAAAAAG-TGTATCATGTTATCTCCGAAGAAAGATAT 410
Query 484 -TGGATCACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGAATCTAG 542
||||||||||||| |||| ||| ||||||||| ||||||||||||||||||| ||||
Sbjct 411 GTGGATCACATGGGTTAGTACTCCCCAATATTGGCGATGGATTTCAATTCCTGAAGCTAG 470
Query 543 ATTC-AACAAAATAGCAGAGCTTCTTGATGTGTGTTGGTTTGAGATTCGTGGCAAGACAA 601
|| || || || |||||||||| ||||||||||||||||| | || || | ||
Sbjct 471 GTTTGAAGAAG-TACCAGAGCTTCTCAATGTGTGTTGGTTTGAGGTCCGAGGGG-G-CAT 527
Query 602 GCG--CTCGTGTGC-TATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAAGACGA 658
| | || | | |||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 528 GAGTACTAAA-TACCTATCGCCTAGAACTCGTTACTCGGCTTACATTGTGTTCAAGAC-A 585
Query 659 AAG-ATCGATGTCCTGGATTAGGGC-ATTTGCCGGTAGAAGTTGGACTTGGTTTAGTGGG 716
||| || |||||||| ||| ||| || |||| | ||||| | | | || || |||||
Sbjct 586 AAGGATAGATGTCCTA-ATTTGGGGGATGTGCCAGCAGAAGCTACAGTCGGATTGGTGGG 644
Query 717 ACAAGAATCTTCTAAAAGATTCATATA-TTTCATAGGGCCTAGGGATCGAAGGG-GA-AG 773
||||| ||| ||| |||||||||| || ||| | ||||||| | ||||| ||| || ||
Sbjct 645 ACAAGCATCATCTCAAAGATTCATTTACTTTGTT-GGGCCTACGAATCGA-GGGAGAGAG 702
Query 774 GAGGGAAACGAGAGATGTAACAAAACCAGATCAAAGAGAA--GATGGGTGGATGGAAGCT 831
|| |||||||||| |||||| |||||| | | |||||| ||||| ||||||||||||
Sbjct 703 -AGAGAAACGAGAGTTGTAACGAAACCA-A-CGGAGAGAAAAGATGGATGGATGGAAGCT 759
Query 832 GAGCTTGGTGAATTCTTCAATGAAGAAAGGTGTGATGAAATTG-AGTTTAGTGTTATTGA 890
|||||||||||||||||||||||| ||| |||||||| ||| | ||| || ||||
Sbjct 760 GAGCTTGGTGAATTCTTCAATGAATCAAGTTGTGATGAGGTTGCAACA-AGTATTCTTGA 818
Query 891 GATTAAGTCCCCTTCTTGGAAGAGTGGTTTGATCATTCAAGGAATCGAATTCCGCCCTAC 950
|| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 819 GACTAAGTCTCCTTATTGGAAGCGTGGTTTGATCATTCAAGGAATCGAATTCCGACCTAC 878
Query 951 GAAAAGCCAGTAA 963
|||||||||||||
Sbjct 879 GAAAAGCCAGTAA 891
> Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122
Length=822
Score = 470 bits (254), Expect = 1e-131
Identities = 628/799 (79%), Gaps = 64/799 (8%)
Strand=Plus/Plus
Query 189 CTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGT 248
|||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 48 CTTGCCGGAGGAATGCATCTCCAACATAATCTCTTTCACAAATCCACGCGATGCGTGCGT 107
Query 249 TGCTGC-ATCGGTTTCCAAAACCTTTGAATCAGCTGTTA-GTTCCGAT-TGCGTATGGGA 305
||||| | | ||||| ||||| |||||||| || || | || | ||| | |||||||
Sbjct 108 CGCTGCTA-CAGTTTCGAAAACGTTTGAATCGGCGGTGAAGT-CAGATATTA-TATGGGA 164
Query 306 CAAGTTTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGATCTCGAGT-TTT-TGCATCG 363
||||||||||| |||||||||||||| || || ||| ||| ||| | ||| | |||||
Sbjct 165 GAAGTTTCTTCCGGCGGAGTATGAATCTCTGATTCCTCCATCGCGA-TCTTTCT-CATCG 222
Query 364 AAGAAGGAACTTTATTTCGCTCTCTGCCACAATCCTGTTCTAATCGAAGATGGCAAAAAG 423
||||||||||| |||||| ||||||| || |||||||||||||||| ||||||||||||
Sbjct 223 AAGAAGGAACTCTATTTCTCTCTCTGTAACGATCCTGTTCTAATCGACGATGGCAAAAAG 282
Query 424 AGCTTTTGGTTAGAAAAAGCGAGTGGAAAAAGGTGTATCATGTTATCTTCAAAGGAACTT 483
||| | |||||||| ||||||||||| || |||||| | ||| ||||| | | | ||| |
Sbjct 283 AGCATATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTCTGATGATATCTGCGATG-AACCT 341
Query 484 -TGGATCACATGGGGA-AGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGAATCTA 541
| |||| ||||||| | || |||| | ||||||||||||||| |||||||||||||||
Sbjct 342 CTCAATCATATGGGGAGA-TACTCCTCACTATTGGCAATGGATTCCAATTCCTGAATCTA 400
Query 542 GATTCAACAAAA-TAGCAGA-GCTTCTTGATGTGTGTTGGTTTGAGATTCGTGGCAAGA- 598
| || | |||| |||| || |||| ||||||| |||||||| ||||||||||||| ||
Sbjct 401 GGTTTGA-AAAAGTAGC-GAAGCTTGTTGATGTATGTTGGTTCGAGATTCGTGGCA-GAA 457
Query 599 C-AAGCGCTCGTGTGCT-ATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAAGAC 656
| || |||||||| || |||||| ||||||||||||||||||| |||||||||||||
Sbjct 458 CGAAT-GCTCGTGT-CTTATCTCCAAGAACTCGTTACTCGGCTTATATTGTGTTCAAGA- 514
Query 657 GAAAGATCGA-TGTCCTGGATTAGGGCATTTGCCGGTAGAAG-TTGGACTTGGTTTAGTG 714
|| | | || ||| ||| || | || || | |||||| || | |||| | |||
Sbjct 515 -AA-G-TGGAATGTTATGGCTTTCAGAATGTGGCAATAGAAGCTTC-AGTTGGAATGGTG 570
Query 715 GGACAAGAATCTTCTAAAAGATTCATATA-TTTCAT-AGGGCC-TA-GG-GAT-CGAAGG 768
||||| ||| |||||| |||||| |||| ||| || | | | || || ||| || ||
Sbjct 571 GGACAGGAACCTTCTAGAAGATTTATATGCTTTGATGAAG-CTATAAGGAGATACG--GG 627
Query 769 GGAAGGAGGGAAACGAGAGATGTAACAAAACCAGATCAAAGAGAAGATGGGTGGATGGAA 828
||||||||| || | | || ||| || ||| |||||||||||||||||||
Sbjct 628 GGAAGGAGG-AA-CTTT-G-TGAAACCTAAGGAGA-----GAGAAGATGGGTGGATGGA- 677
Query 829 GCT-GAGCTTGGTGAATTCTTCAATGAAG-A--AAG---G--T-GTGATGAAATTGAGTT 878
| | |||||||| |||||||||| ||||| | || | | |||||||||||||| |
Sbjct 678 GATAGAGCTTGGGGAATTCTTCATTGAAGGAGGAATAATGAATAGTGATGAAATTGAGAT 737
Query 879 TAGTGTTATT-GAGATTAAG-TCCCCTTCTTGGAAGAGTGGTTTGATCATTCAAGGAATC 936
|||| | || |||| |||| | | | ||||||| |||| |||||||||||||||||
Sbjct 738 GAGTGCT-TTAGAGACTAAGCTGCTCAA-TTGGAAGTGTGGCTTGATCATTCAAGGAATT 795
Query 937 GAATTCCGCCCTACGAAAA 955
||| |||||||| | ||||
Sbjct 796 GAAATCCGCCCTGCCAAAA 814
> Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220
Length=828
Score = 327 bits (177), Expect = 7e-89
Identities = 604/801 (75%), Gaps = 65/801 (8%)
Strand=Plus/Plus
Query 189 CTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGATGCGTGCGT 248
|||||||||||| |||||||||||||||||||||||||| ||||| | ||| ||||||||
Sbjct 54 CTTGCCGGAGGACTGCATCTCCAACATAATCTCTTTCACCAGTCCTCTAGACGCGTGCGT 113
Query 249 TGCT-GCATCGGTTTCCAAAAC-CTTTGAATCAGCTG-TTAGTTCCGATTGCGTATGGGA 305
| | || ||||||| | | || ||| ||| | || | || || ||| |||||||||
Sbjct 114 AG-TCGCTTCGGTTT-CGAGACTCTTCGAAGCGGCGGCCAAG-TCAGATACCGTATGGGA 170
Query 306 CAAGTTTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGATCTCGAG-TTTTTGCATCGA 364
|| |||||||| ||||| | ||||||| ||||| || |||| || | ||| | ||| ||
Sbjct 171 GAAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCTGGATCGCGGGATTTCT-CATTGA 229
Query 365 AGAAGGAACTTTATTTCGCTCTCTGCCACAATCCTGTTCTAATCGA-AGATGGCAAAAA- 422
||||||| || ||||||||||| ||| | |||| ||||||||||| | |||| |||||
Sbjct 230 AGAAGGAGCTCTATTTCGCTCTTTGCGGCGATCCGGTTCTAATCGATA-ATGG-AAAAAT 287
Query 423 GAGCTTTTGGTTAGAAAAAGCGAGT-GGAAAAAGGTGTATCATGTTATCTTCAAAGG--A 479
|||||| |||||||| ||||||| | |||| || ||||||||||||| || | || |
Sbjct 288 GAGCTTCTGGTTAGATAAAGCGAATGGGAAGAA-GTGTATCATGTTA--TT-AGCGGATA 343
Query 480 A-CTTTGGATCACATGGGGAAG-TAGTCCTGAATATTGGCAATGGATTTC-AATTCCTGA 536
| || | |||| |||||| || | | ||| ||||||| |||| ||| ||| |||||
Sbjct 344 ACCTCAGTATCATATGGGG-AGAAAATATTGACCATTGGCATTGGA-TTCGAATACCTGA 401
Query 537 ATCTA-GATTCAACAAAATAGCAGAGCTTCTTGA-TGTGTGTTGGTTTGAGATTCGTGGC 594
| ||| | || | ||| |||| |||||| | | || |||||||| ||||| |||||
Sbjct 402 AGCTAGGTTTGGA-AAAGTAGCGGAGCTT-GTCAGCGTATGTTGGTTCAAGATTTGTGGC 459
Query 595 A-AGACAAGCGCTCGTGTGCTATCTCCTGGAACTCGTTACTCGGCTTACATTGTGTTCAA 653
| || || || |||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 460 AGAGTGAA-TACTTGTGTCCTATCTCCAGAAACTCGTTACTCGGCTTACATTGTGTTCAA 518
Query 654 GACGAA-AG-ATCGA-TGTCCTGGATTAG-GGCATTTG-CCGGTAGAAGTTGGAC-TTGG 707
|| || || || || ||| ||| || | || || || || |||||| || | ||||
Sbjct 519 GA--AAGAGGAT-GACTGTTATGGCTTTGAGG-ATGTGGCCA-TAGAAGCTGC-CGTTGG 572
Query 708 TTTAGTGGGACAAGAATCTTCTAAAAGATTCATATA-TTTCATAGGGCCTAGGGATCGAA 766
| |||||||| ||| |||||| ||||||||||| ||| || | || || | |
Sbjct 573 AGTGGTGGGACATGAACCTTCTAGAAGATTCATATGCTTTGAT-GAGC--AGTTTTTTA- 628
Query 767 GGGGA-AGGAGGGAAACGAG-AGATGTAACAAAACCAGATCAA-AGA-GAAGATGGGTGG 822
|| || || |||||| || | | || |||||||| || ||| || ||||| |||
Sbjct 629 GGAGAGAGAAGGGAATT-AGTA-ACCTAGTGAAACCAGAG-AAGAGACGA-GATGGATGG 684
Query 823 ATGGAAGCT-GAGCTTGGTGAATTCTTCAATGAAG-A-AAG-GT---GTGATGAAATTGA 875
||||| | | |||||||| |||||||||| ||||| | || || |||||||||||||
Sbjct 685 ATGGA-GATTGAGCTTGGGGAATTCTTCACTGAAGGAGAAATGTATAGTGATGAAATTGA 743
Query 876 GTTTAGTGTTATTGAGATTAAGTCCC-CTTCTTGGAAGAGTGGTTTGATCATTCAAGGAA 934
| | |||| | | |||| ||||| | | ||||||| | || |||||||||| |||||
Sbjct 744 GATAAGTGCTCTAGAGACTAAGTTGCTCAA-TTGGAAGCGCGGCTTGATCATTCTAGGAA 802
Query 935 TCGAATTCCGCCCTACGAAAA 955
| ||| |||| ||| | ||||
Sbjct 803 TTGAAATCCGTCCTGCAAAAA 823
> Ahg935977 jgi|Araly1|935977|scaffold_500168.1
Length=881
Score = 309 bits (167), Expect = 2e-83
Identities = 301/366 (82%), Gaps = 8/366 (2%)
Strand=Plus/Plus
Query 181 TTTGATGT-CTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTCCACGAGA 239
|||||| | |||||| || || |||||| |||||||||||||||||||||||||||| ||
Sbjct 91 TTTGAT-TCCTTGCCCGAAGAATGCATCCCCAACATAATCTCTTTCACAAGTCCACGCGA 149
Query 240 TGCGTGCGTTGCTGCATCGGTTTCCAAAACCTTTGAATCAGCTGTTAGTTCCGATTGCGT 299
|||||||| ||||| ||| |||| |||||||||||||| || | | || |||| |||
Sbjct 150 CGCGTGCGTCGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGCCAAATCAGATTTCGT 209
Query 300 ATGGGACAAGTTTCTTCCACCGGAGTATGAATCTTTGGTTTCTCGATCTCGAGTTTT-TG 358
|||||| |||||| |||| ||||| ||||||||| ||||| ||||||| || | || |
Sbjct 210 ATGGGAGAAGTTTATTCCGCCGGATTATGAATCTCTGGTTCCTCGATCGCGGGAATTCT- 268
Query 359 CATCGAAGAAGGAACTTTATTTCGCTCTCTGCCACAATCCTGTTCTAATCGAAGATGGCA 418
||||||||||||| || ||||||||||| || || ||||| |||||||||| |||||||
Sbjct 269 CATCGAAGAAGGAGCTCTATTTCGCTCTATGTAACGATCCTCTTCTAATCGATGATGGCA 328
Query 419 AAAAGAGCTTTTGGTTAGAAAAAGCGAGTGGAAAAAGGTGTATCATGTTATCTTCAAAGG 478
|||||||| | |||||||| ||||||||||| || || |||||||||||||| | | |
Sbjct 329 AAAAGAGCATCTGGTTAGAGAAAGCGAGTGGGAAGAGATGTATCATGTTATCAGCTATG- 387
Query 479 AA-CTTTGGATCACATGGGGA-AGTAGTCCTGAATATTGGCAATGGATTTCAATTCCTGA 536
|| || | || ||||||| || | || | | ||||||||||||||| ||||||||||
Sbjct 388 AATCTCTCAATGGTATGGGGAGAGGA-TCGTCACTATTGGCAATGGATTCCAATTCCTGA 446
Query 537 ATCTAG 542
||||||
Sbjct 447 ATCTAG 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35759296146
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5