BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02250.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322562 jgi|Araly1|322562|fgenesh1_pm.C_scaffold_5000106 1055 0.0
Ahg935970 jgi|Araly1|935970|scaffold_500161.1 721 0.0
Ahg322561 jgi|Araly1|322561|fgenesh1_pm.C_scaffold_5000105 704 0.0
Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220 344 7e-94
Ahg322563 jgi|Araly1|322563|fgenesh1_pm.C_scaffold_5000107 283 1e-75
Ahg935977 jgi|Araly1|935977|scaffold_500168.1 263 2e-69
> Ahg322562 jgi|Araly1|322562|fgenesh1_pm.C_scaffold_5000106
Length=891
Score = 1055 bits (571), Expect = 0.0
Identities = 800/908 (88%), Gaps = 26/908 (3%)
Strand=Plus/Plus
Query 43 ATGGGACACAAACAAAGCGTTGACTCTAGAGGCAAAGGCCGAA-AAGTTCCCGGTTCTTC 101
||||| |||||||||||||||||||| | ||| ||||| | || |||| ||||||||||
Sbjct 1 ATGGGGCACAAACAAAGCGTTGACTCCACAGGGAAAGG-CAAAGAAGTGGCCGGTTCTTC 59
Query 102 GTCGATGGTGCAAAAACATAGAGTTGAATCTAGCGGAGGAGCTATCATCTCCGGACCGTC 161
||||||| ||| |||||| | ||||||||| || |||||||||
Sbjct 60 GTCGATGATGCTAAAACACGGCGTTGAATCT--------AG----------CGGACCGTC 101
Query 162 ACTGTTCGATAACTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCG 221
|||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||
Sbjct 102 GCTGTTCGATAACTTACCGGAAGATTGCATTTCCAACATAATCTCTTTCACAAGTCCACG 161
Query 222 TGACGCTTGCGTTGCAGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCCGATAG 281
|| || |||||||| || |||||||| |||||||||||||||||||||| |||||||||
Sbjct 162 AGATGCGTGCGTTGCTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAGTTCCGATAG 221
Query 282 CGTATGGGACAAGTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCATCT-CGAGTTT 340
||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||
Sbjct 222 CGTATGGGACAAGTTTCTTCCGCCGGATTATTCATCTCTAATTCCTCCAT-TGCGAGTTT 280
Query 341 TCTCATCGAAGAAGGAGCTCTATTTCGCTATATGCGACAATCCTGT-TCTAGTCGAAGAT 399
| ||||||||||||||||||||||||||||||||||| |||||||| | || |||| |||
Sbjct 281 TTTCATCGAAGAAGGAGCTCTATTTCGCTATATGCGATAATCCTGTGT-TAATCGACGAT 339
Query 400 GGCGGAAAGAGCTTCTGGTTAGAGAAAGAGAATGGGAAAAAGTGTTTCATGTTATCTCCG 459
|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 340 GGTAAAAAGAGCTTCTGGTTAGAGAAAGGGAATGGGAAAAAGTGTATCATGTTATCTCCG 399
Query 460 AAGAAATCTATGTGGATCACATGGGTTAGTACTCCTCAGTATTGGCGATGGATTTCGATT 519
|||||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 400 AAGAAAGATATGTGGATCACATGGGTTAGTACTCCCCAATATTGGCGATGGATTTCAATT 459
Query 520 CCTGAAGCTAGGTTTGAAGAAGTACCAGAGCTGCTCAATGTGTGTTGGTTTGAGGTCCGA 579
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 460 CCTGAAGCTAGGTTTGAAGAAGTACCAGAGCTTCTCAATGTGTGTTGGTTTGAGGTCCGA 519
Query 580 GGGGGAATGAATACTAAAGAACTATCTCCTGGAACCCGTTACTCGGCTTACATTGTGTTC 639
||||| |||| ||||||| | ||||| ||| |||| ||||||||||||||||||||||||
Sbjct 520 GGGGGCATGAGTACTAAATACCTATCGCCTAGAACTCGTTACTCGGCTTACATTGTGTTC 579
Query 640 AAGACAAAGAATGGATGTCCTAATTTGGGGGATGTGCCAGTAGAAGCTACTGTTGGATTG 699
||||||||| || ||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 580 AAGACAAAGGATAGATGTCCTAATTTGGGGGATGTGCCAGCAGAAGCTACAGTCGGATTG 639
Query 700 GTGGGACAAGAATCTTCTCAAAGACACATATACTTTGTTGGGCCTTCGGATCAAAGGAGA 759
|||||||||| ||| ||||||||| ||| ||||||||||||||| || ||| | |||||
Sbjct 640 GTGGGACAAGCATCATCTCAAAGATTCATTTACTTTGTTGGGCCTACGAATCGAGGGAGA 699
Query 760 GACAGAGAAACGAGAGATGTAACGAGACCAACTAAAAGAAAAGATGGTTGGATGGAAGCT 819
|| ||||||||||||| |||||||| |||||| | ||||||||||| ||||||||||||
Sbjct 700 GAGAGAGAAACGAGAGTTGTAACGAAACCAACGGAGAGAAAAGATGGATGGATGGAAGCT 759
Query 820 GAGCTTGGTCAATTCTTCAATGAGTCAGGTTGTGATGTTGTTGACA-CAAGTATTCTTGA 878
||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||||||||
Sbjct 760 GAGCTTGGTGAATTCTTCAATGAATCAAGTTGTGATGAGGTTG-CAACAAGTATTCTTGA 818
Query 879 GATTAAGACTCCTTATTGGAAGCGCGGTTTGATCATTCAAGGAATCGAATTCCGTCCCAC 938
|| |||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 819 GACTAAGTCTCCTTATTGGAAGCGTGGTTTGATCATTCAAGGAATCGAATTCCGACCTAC 878
Query 939 CAAAAGCC 946
|||||||
Sbjct 879 GAAAAGCC 886
> Ahg935970 jgi|Araly1|935970|scaffold_500161.1
Length=994
Score = 721 bits (390), Expect = 0.0
Identities = 682/820 (83%), Gaps = 32/820 (4%)
Strand=Plus/Plus
Query 134 GCGGAGGAGCTATC-AT-CT-CC-GGACCGTCACTGTTCGATAACTTACCGGAGGATTGC 189
||||||||| ||| || | || || ||||||| |||||| |||| || |||||||||
Sbjct 58 GCGGAGGAGGGATCGATGTTCCCAGG-CCGTCACCATTCGATTACTTGCCAGAGGATTGC 116
Query 190 ATCTCCAACATCATCTCTTTCACGAGTCCTCGTGACGCTTGCGTTGCAGCTTCGGTTTCG 249
||||||||||| |||||||| || | ||| || ||||| || ||||||||||| ||||||
Sbjct 117 ATCTCCAACATAATCTCTTTTACAACTCCACGAGACGCGTGTGTTGCAGCTTCTGTTTCG 176
Query 250 AAAACCTTTGAATCGGCTGT-TAATTCCGATAGCGTATGGGACAAGTTTCTTCCATCGGA 308
|||||||||||||||||||| || ||||||| ||||||||| ||||||||||| ||||
Sbjct 177 AAAACCTTTGAATCGGCTGTCCAA-TCCGATACCGTATGGGAGAAGTTTCTTCCGCCGGA 235
Query 309 TTATTCATCTCTAGTTCCTCCATCTCGAGTTTTCTCATCGAAGAAGGAGCTCTATTTCGC 368
|||||| ||| | ||||||| ||| |||||||||| || |||||||| ||||||||| |
Sbjct 236 TTATTCCTCTTTGGTTCCTCAATCGCGAGTTTTCTTGTCCAAGAAGGATCTCTATTTCTC 295
Query 369 TATATGCGAC-AATCCTGTTCTAGTCGAAGATGGCGGAAAGAGCTTCTGGTTAGAGAAAG 427
| | ||| || || ||| ||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 296 TCTCTGCCACGAA-CCTCTTCTAATCGAAGACGGCAAAAAGAGCTTCTGGTTAGAGAAA- 353
Query 428 A-GAATGGGAAAAAGTGTTTCATGTTATCTCCGAAGAAATCTATGTGGATCACATGGGTT 486
| || |||||||| |||| ||||||||||||| ||| || ||||||||||||||||||
Sbjct 354 ACGAGTGGGAAAAGGTGTATCATGTTATCTCCAAAGGAA---ATGTGGATCACATGGGTT 410
Query 487 AGTACTCCTCAGTATTGGCGATGGATTTCGATTCCTGAAGCTAGGTTTGAAGAAGTACCA 546
|||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 411 AGTAGTCCTCAGTATTGGCGATGGATTTCAATTTCTGAAGCTAGGTTTGAAGAAGTACCA 470
Query 547 GAGCTGCTCAATGTGTGTTGGTTTGAGGTCCGAGGGGGAATGAATACTAAAGAACTATCT 606
|||| ||||| ||||| ||||||||||| || || |||||| |||| | ||||||
Sbjct 471 AAGCTTCTCAACGTGTGCTGGTTTGAGGTTCGTGGTAGAATGAGTACTCGTTACCTATCT 530
Query 607 CCTGGAACCCGTTACTCGGCTTACATTGTGTTCAAGAC-AAAGAATGGATGT-CCTAATT 664
|||||||| | |||||| | |||||||||||||||| | |||| || |||| || | |
Sbjct 531 CCTGGAACTCATTACTCTGTTTACATTGTGTTCAAGCCAAAAG-ATCAATGTCCCGGA-T 588
Query 665 TGGGGGATGTGCCAGTAGAAGCTACTGTTGGATTGGTGGGACAAGAATC-TTCTCAAAGA 723
|||||||| | ||| || ||| || || |||||||||||||||||| | || |||||||
Sbjct 589 TGGGGGATTTACCAATAAAAGTTAAAGTCGGATTGGTGGGACAAGAA-CTTTTTCAAAGA 647
Query 724 CACATATACTTTGTTGGGCCT-TCGGATCAAAGGAGAGACAGAGAAACGAGAGATGTAAC 782
|||| ||||||||||||| | |||||||||| | | ||||||| ||| || |||||
Sbjct 648 TTCATACGCTTTGTTGGGCCTAT-GGATCAAAGGTGTGGGAGAGAAATGAGCGACGTAAC 706
Query 783 GAGACCA-ACTAAAAGAAAAGATGGTTGGATGGAAGCTGAGCTTGGTCAATTCTTCAATG 841
||||||| | ||||| ||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 707 GAGACCAGA-GGAAAGAGAAGATGGATGGATGGAAGCTGAGCTTGGTGAATTTTTCAATG 765
Query 842 -AGTCAGGTTGTGATG-T--TGTTGACA-CAAGTATTCTTGAGATTAAGACTCCTTATTG 896
| | | ||||||||| | |||||| | |||| || ||||||||||| ||||||||||
Sbjct 766 AAAT-AAGTTGTGATGATCATGTTGA-AGTAAGTGTTGTTGAGATTAAGTCTCCTTATTG 823
Query 897 GAAGCGCGGTTTGATCATTCAAGGAATCGAATTCCGTCCC 936
||| | ||||||||||||||||||||||||||||| |||
Sbjct 824 GAAAAGTGGTTTGATCATTCAAGGAATCGAATTCCG-CCC 862
> Ahg322561 jgi|Araly1|322561|fgenesh1_pm.C_scaffold_5000105
Length=954
Score = 704 bits (381), Expect = 0.0
Identities = 712/866 (82%), Gaps = 45/866 (5%)
Strand=Plus/Plus
Query 105 GATGGTGCAAAAACATAG-A--GTTGAATCTAGCGGAGGAGCTATC-AT-CT-CCGGACC 158
||||| |||||| ||| | | ||||||||||||| |||| ||| | | |||| |
Sbjct 105 GATGGGGCAAAATCATGGCATTATTGAATCTAGCGGTGGAGAGATCGTTGTTCCCGGGTC 164
Query 159 GTCA-CTGTTCGATAACTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTC 217
|||| || || ||| ||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 165 GTCACCT-TTTGATGTCTTGCCGGAGGATTGCATCTCCAACATAATCTCTTTCACAAGTC 223
Query 218 CTCGTGACGCTTGCGTTGCAGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCCG 277
| || || || |||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 224 CACGAGAAGCGTGCGTTGCTGCATCGGTTTCAAAAACCTTTGAATCGGCTGTTAATTCCG 283
Query 278 ATAGCGTATGGGACAAGTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCA-TCTCGA 336
||||||||||||||||||||||||| |||||||||||||||| ||| ||| | ||||||
Sbjct 284 ATAGCGTATGGGACAAGTTTCTTCCGCCGGATTATTCATCTCTGGTTTCTC-AGTCTCGA 342
Query 337 GTTTTCTCATCGAAGAAGGAGCTCTATTTCGCTATATGCGACAATCCTGTTCT-AGTCGA 395
|||||| |||||||||||||||| ||||||||| | ||| |||||| |||||| | | ||
Sbjct 343 GTTTTCGCATCGAAGAAGGAGCTTTATTTCGCTCTCTGCCACAATCATGTTCTGATT-GA 401
Query 396 AGATGGCGGAAAGAGCTTCTGGTTAGAGAAAGAGAATGGGAAAAAGTGT-TTCATGTTAT 454
||||||| ||||||||| ||||||||||||| || |||||||| |||| || |||||||
Sbjct 402 AGATGGCAAAAAGAGCTTTTGGTTAGAGAAAGCGAGTGGGAAAAGGTGTATT-ATGTTAT 460
Query 455 CTCCGAAGAAATCTATGTGGATCACATGGGTTAGTACTCCTCAGTATTGGCGATGGATTT 514
|| | ||| || || | ||||||||||||| |||| |||| | ||||||| ||||||||
Sbjct 461 CTTCAAAGGAA-CT-T-TGGATCACATGGGGAAGTAGTCCTGAATATTGGCAATGGATTT 517
Query 515 C-GATTCCTGAAGCTAGGTTTGAAGAAGTACCAGAGCTGCTCAATGTGTGTTGGTTTGAG 573
| | |||||||| |||| |||||| ||||| ||||||| || ||||| ||||||||||||
Sbjct 518 CAG-TTCCTGAATCTAGATTTGAAAAAGTAGCAGAGCTTCTTAATGTATGTTGGTTTGAG 576
Query 574 GTCCGAGGGGGAATGA-AT--ACTAAAGAACTATCTCCTGGAACCCGTTACTCGGCTTAC 630
| || ||| || || | ||| | ||||||||||||| |||||||||||||||
Sbjct 577 ATTCG-GGGC-AA-GACAAGCACTCGTTTATTATCTCCTGGAACTCGTTACTCGGCTTAC 633
Query 631 ATTGTGTTCAAGACAAA-GAATGGATGTCCTA-ATTTGGGGGATGTGCCAGTAGAAGCT- 687
||||| |||||||| || || |||||||||| ||| ||| || |||| ||||||| |
Sbjct 634 ATTGTTTTCAAGACGAATGA-TGGATGTCCTGGATTAGGGC-ATTTGCCGGTAGAAGTTG 691
Query 688 -ACTGTTGGATTGGTGGGACAAGAATCTTCTCAAA-GACACATATACTTTGTTGGGCCTT 745
||| | || |||||||||||||||||||| |||| | ||||||||| ||||| |||
Sbjct 692 GACT-T-GGTTTGGTGGGACAAGAATCTTC-CAAAAGGTTCATATACTTCGTTGGACCTA 748
Query 746 CGGATCA-AAGGAGAGACAGAGAAACGAGAGATGTAACGAGACCA-A-CTAAAAGAAAAG 802
||| | |||||||| || ||||||||||||||||||| |||| | | | | || |||
Sbjct 749 -GGAACCGAAGGAGAGGGAGGGAAACGAGAGATGTAACGAAACCAGAGC-AGA-GAGAAG 805
Query 803 ATGGTTGGATGGAAGCTGAGCTTGGTCAATTCTTCAATGA-GTCAGGTTGTGATGTTGTT 861
|||| ||||||||||||||||||||| ||||||||||||| | || |||||||| ||
Sbjct 806 ATGGGTGGATGGAAGCTGAGCTTGGTGAATTCTTCAATGAAGAAAG-TTGTGATGAAATT 864
Query 862 GACACAAGTATTCTTGAGATTAAGACTCCTTATTGGAAGCGCGGTTTGATCATTCAAGGA 921
|| ||| || ||||||||||| |||||| ||||||| | ||||||||||||||||||
Sbjct 865 GAGTTTAGTGTTATTGAGATTAAGTCTCCTTCTTGGAAGAGTGGTTTGATCATTCAAGGA 924
Query 922 ATCGAATTCCGTCCC-ACCAAAAGCC 946
||||||||||| ||| || |||||||
Sbjct 925 ATCGAATTCCG-CCCTACGAAAAGCC 949
> Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220
Length=828
Score = 344 bits (186), Expect = 7e-94
Identities = 600/792 (76%), Gaps = 60/792 (8%)
Strand=Plus/Plus
Query 174 CTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCGT-GACGCTTGCG 232
||| |||||||| |||||||||||||| ||||||||||| ||||||| | ||||| ||||
Sbjct 54 CTTGCCGGAGGACTGCATCTCCAACATAATCTCTTTCACCAGTCCTC-TAGACGCGTGCG 112
Query 233 TTG-CAGCTTCGGTTTCGAAAAC-CTTTGAATCGGCTGTTAATTCCGATAGCGTATGGGA 290
| | | |||||||||||| | || ||| ||| |||| | || || |||| |||||||||
Sbjct 113 TAGTC-GCTTCGGTTTCG-AGACTCTTCGAAGCGGCGGCCAAGTCAGATACCGTATGGGA 170
Query 291 CAAGTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCATCTCGAGTTTTCTCATCGAA 350
|| |||||||| |||||| | |||||| |||||| ||| || | |||||||| |||
Sbjct 171 GAAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCTGGATCGCGGGATTTCTCATTGAA 230
Query 351 GAAGGAGCTCTATTTCGCTATATGCGACAATCCTGTTCTAGTCGA-AGATGGCGGAAA-G 408
||||||||||||||||||| | |||| | |||| |||||| |||| | |||| ||| |
Sbjct 231 GAAGGAGCTCTATTTCGCTCTTTGCGGCGATCCGGTTCTAATCGATA-ATGG-AAAAATG 288
Query 409 AGCTTCTGGTTAGAGAAAGAGAATGGGAAAAAGTGTTTCATGTTATCTCCGAAGA-AATC 467
|||||||||||||| |||| ||||||||| |||||| ||||||||| | | || || |
Sbjct 289 AGCTTCTGGTTAGATAAAGCGAATGGGAAGAAGTGTATCATGTTAT-T-AGCGGATAACC 346
Query 468 T-ATGTGGATCACATGGGTTAG-TACTCCTCAGTATTGGCGA-TGGATTTCG-ATTCCTG 523
| | || |||| ||||| || | | | | |||||| | |||| |||| || ||||
Sbjct 347 TCA-GT--ATCATATGGG-GAGAAAATATTGACCATTGGC-ATTGGA-TTCGAATACCTG 400
Query 524 AAGCTAGGTTT-GAAGAAGTACCAGAGC-TGCTCAATGTGTGTTGGTTTGAGGTCCGAGG 581
||||||||||| ||| ||||| | |||| || ||| || |||||||| || | | ||
Sbjct 401 AAGCTAGGTTTGGAA-AAGTAGCGGAGCTTG-TCAGCGTATGTTGGTTCAAGATTTGTGG 458
Query 582 GGGAATGAATACTAAAGAACTATCTCCTGGAACCCGTTACTCGGCTTACATTGTGTTCAA 641
|| |||||||| | |||||||| | ||| ||||||||||||||||||||||||||
Sbjct 459 CAGAGTGAATACTTGTGTCCTATCTCCAGAAACTCGTTACTCGGCTTACATTGTGTTCAA 518
Query 642 GACAA-AGAATGGA-TGTCCTAA-TTTGGGGGATGTG-CCAGTAGAAGCTACTGTTGGAT 697
|| || || ||| | ||| | |||| || ||||| ||| |||||||| | ||||||
Sbjct 519 GA-AAGAGGATG-ACTGTTATGGCTTTGAGG-ATGTGGCCA-TAGAAGCTGCCGTTGGAG 574
Query 698 TGGTGGGACAAGAATCTTCTCA-AAGACACATATACTTTGTTGGGCC-TTCGGATCAAAG 755
|||||||||| ||| ||||| | |||| ||||| ||||| || || || | | |
Sbjct 575 TGGTGGGACATGAACCTTCT-AGAAGATTCATATGCTTTGATGAGCAGTTTTT-T-A--G 629
Query 756 GAGAGACA-GAGAAACGAG-AGATGTAACGAGACCA-ACTAAAAGAAAAGATGGTTGGAT 812
|||||| | | ||| || | | || || |||| | || ||| |||||| |||||
Sbjct 630 GAGAGAGAAGGGAATT-AGTA-ACCTAGTGAAACCAGAG-AAGAGACGAGATGGATGGAT 686
Query 813 GGAAGCT-GAGCTTGGTCAATTCTTCAATGA-GTCAG----GT-T-GTGATGTTGTTGAC 864
||| | | |||||||| ||||||||| ||| | || || | |||||| ||||
Sbjct 687 GGA-GATTGAGCTTGGGGAATTCTTCACTGAAGG-AGAAATGTATAGTGATGAAATTGAG 744
Query 865 ACAAGTATTCTTGAGATTAAGACTCCTTA-TTGGAAGCGCGGTTTGATCATTCAAGGAAT 923
| |||| ||| |||| |||| | || | |||||||||||| |||||||||| ||||||
Sbjct 745 ATAAGTGCTCTAGAGACTAAGT-TGCTCAATTGGAAGCGCGGCTTGATCATTCTAGGAAT 803
Query 924 CGAATTCCGTCC 935
||| |||||||
Sbjct 804 TGAAATCCGTCC 815
> Ahg322563 jgi|Araly1|322563|fgenesh1_pm.C_scaffold_5000107
Length=921
Score = 283 bits (153), Expect = 1e-75
Identities = 427/555 (77%), Gaps = 35/555 (6%)
Strand=Plus/Plus
Query 169 GATAACTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCGT-GACGC 227
||| |||||||||| || || ||||||| ||| ||||||||||| ||||||| | || ||
Sbjct 118 GATGACTTACCGGAAGAATGTATCTCCATCATAATCTCTTTCACAAGTCCTC-TAGATGC 176
Query 228 TTGCGTTGC-AGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCC-GATAGCGTA 285
|||| | | ||||| ||||||||||||||||||||||| | || || |||| ||||
Sbjct 177 GTGCG-TCCTTGCTTCCGTTTCGAAAACCTTTGAATCGGCGGCCAA-GCCAGATATCGTA 234
Query 286 TGGGACAAGTTTCTTCCATCGGATTATTCATCTCTAG-TTCCTCCATCTCGAGTTTTCTC 344
||||| |||||| |||| | || ||| |||| | | || ||| ||| |||| ||||||
Sbjct 235 TGGGAGAAGTTTATTCCGCCAGAGTATGAATCT-TTGATTTCTCAATCCCGAGATTTCTC 293
Query 345 ATCGAAGAAGGAGCTCTATTTCGCTATATGCGAC-AATCCTGTTCTAGTCGAAGATGGCG 403
||||||||||||||||||||||||| | |||||| |||| ||||||| |||| ||||||
Sbjct 294 ATCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACGAATC-TGTTCTAATCGACGATGGCA 352
Query 404 GAAAGAGCTTCT--GGTTAGAGAAAGAGAATGGGAAAAAG-TGTTTCATGTTATCTCCGA 460
||| || |||| |||||||||||| ||||| ||| || ||| |||||||||| ||
Sbjct 353 -AAA-AGTTTCTATGGTTAGAGAAAGCGAATGC-AAAGAGGTGTATCATGTTATCAGAGA 409
Query 461 AGAAATCTATGTGGATCACATGGGTTAGT-ACTCCTCAGTA-TTGGCGATGGATTTC-GA 517
| | || | ||||| |||| | | | ||||||| | ||||| ||||||| | ||
Sbjct 410 TGTAC-CTCTCA--ATCACTTGGGGAAATTA-TCCTCAG-AGTTGGCAATGGATTCCAGA 464
Query 518 TTCCTGAAGCTAGGTTTGAAGA-AGTACCAGAGCTGCTCA-ATGTGTGTTGGTTTGAGGT 575
| ||| |||||||||||||| | |||| | ||||| || | || |||| ||||||| |
Sbjct 465 T-CCTCAAGCTAGGTTTGAA-ACAGTAGCGGAGCTACTTGGA-GTATGTTTGTTTGAGAT 521
Query 576 CCGAGGGGGAATGAATACTAAAGAAC-TATCTCCTGGAACCCGTTACTCGGCTTACATTG 634
|| || |||| |||| | ||| ||||||| |||| ||||||||||||||||||
Sbjct 522 TCGTGGCAGAATAAATAGTTGC-AACCTATCTCCAAGAACTCGTTACTCGGCTTACATTA 580
Query 635 TGTTCAAGACAAAGAATGGATGTCCTAA-TTTGGGGGATGTGCCAGTAGAAGCTACT-GT 692
|||||| || |||| || |||| | |||| | ||||| | ||||||| | | ||
Sbjct 581 TGTTCAGGAAAAAGGATATATGTTATGGCTTTGAGA-ATGTGGCTGTAGAAGTTG-TAGT 638
Query 693 TGGATTGGTGGGACA 707
||||||||||||||
Sbjct 639 AGGATTGGTGGGACA 653
> Ahg935977 jgi|Araly1|935977|scaffold_500168.1
Length=881
Score = 263 bits (142), Expect = 2e-69
Identities = 292/364 (80%), Gaps = 11/364 (3%)
Strand=Plus/Plus
Query 174 CTTACCGGAGGATTGCATCTCCAACATCATCTCTTTCACGAGTCCTCGTGACGCTTGCGT 233
||| || || || |||||| ||||||| ||||||||||| ||||| || ||||| |||||
Sbjct 99 CTTGCCCGAAGAATGCATCCCCAACATAATCTCTTTCACAAGTCCACGCGACGCGTGCGT 158
Query 234 TGCAGCTTCGGTTTCGAAAACCTTTGAATCGGCTGTTAATTCCGATAGCGTATGGGACAA 293
|| |||||| |||||||||||||||||||||| | || || ||| ||||||||| ||
Sbjct 159 CGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGCCAAATCAGATTTCGTATGGGAGAA 218
Query 294 GTTTCTTCCATCGGATTATTCATCTCTAGTTCCTCCATCTCGAGTTTTCTCATCGAAGAA 353
|||| |||| |||||||| |||||| ||||||| ||| || | ||||||||||||||
Sbjct 219 GTTTATTCCGCCGGATTATGAATCTCTGGTTCCTCGATCGCGGGAATTCTCATCGAAGAA 278
Query 354 GGAGCTCTATTTCGCTATATGCGACAATCCTGTTCTAGTCGAAGATGGCGGAAAGAGCTT 413
|||||||||||||||| |||| || ||||| ||||| |||| |||||| ||||||| |
Sbjct 279 GGAGCTCTATTTCGCTCTATGTAACGATCCTCTTCTAATCGATGATGGCAAAAAGAGCAT 338
Query 414 CTGGTTAGAGAAAGAGAATGGGAAAA-AGTGTTTCATGTTATCTCCGAAGAAA-TCT-AT 470
|||||||||||||| || |||||| | | ||| |||||||||| | | ||| ||| |
Sbjct 339 CTGGTTAGAGAAAGCGAGTGGGAAGAGA-TGTATCATGTTATCAGCTATGAATCTCTCAA 397
Query 471 GTGGATCACATGGGTT-AGTACTCCTCAGTATTGGCGATGGATTTCGATTCCTGAAGCTA 529
||| | | |||| || | || ||| ||||||| ||||||| | ||||||||| |||
Sbjct 398 -TGG-T-A--TGGGGAGAGGA-TCGTCACTATTGGCAATGGATTCCAATTCCTGAATCTA 451
Query 530 GGTT 533
||||
Sbjct 452 GGTT 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5