BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02340.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322563 jgi|Araly1|322563|fgenesh1_pm.C_scaffold_5000107 1171 0.0
Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122 569 1e-161
Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220 414 5e-115
Ahg935977 jgi|Araly1|935977|scaffold_500168.1 261 7e-69
Ahg935974 jgi|Araly1|935974|scaffold_500165.1 243 2e-63
> Ahg322563 jgi|Araly1|322563|fgenesh1_pm.C_scaffold_5000107
Length=921
Score = 1171 bits (634), Expect = 0.0
Identities = 837/932 (90%), Gaps = 25/932 (3%)
Strand=Plus/Plus
Query 1 ATGACCAAAACAAGGTGCATGCATGAGCATTTTCGTAAAATT-GTACAACGAGTTAAGAA 59
||||||||||||| || ||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1 ATGACCAAAACAAAGTTCATGCATGAGCATTTTCGT-AAATTGGTACAACGACTTAAGAA 59
Query 60 GACTCTTAGACTCTCAGCTTCCGACAAAAGTCACGGCGTTGCTG--A----G---TTGGA 110
|||||||| ||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 60 GACTCTTACACTCTCAGCTTCCGACAAAAGTCACGGCGTTGCTGCTACGTTGTCTTTGGA 119
Query 111 TGACTTACCGGAAGAATGTGTCTCAATCATAGTCTCTTTCACAAGCCCTCAAGATGCGTG 170
||||||||||||||||||| |||| |||||| ||||||||||||| |||| |||||||||
Sbjct 120 TGACTTACCGGAAGAATGTATCTCCATCATAATCTCTTTCACAAGTCCTCTAGATGCGTG 179
Query 171 CGTCCTTGCTTCGGTTTCGAAAACCTTTGCTTCGGCGGTCAAGTCAGATATTGTATGGGA 230
|||||||||||| |||||||||||||||| ||||||| |||| ||||||| ||||||||
Sbjct 180 CGTCCTTGCTTCCGTTTCGAAAACCTTTGAATCGGCGGCCAAGCCAGATATCGTATGGGA 239
Query 231 GAAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGCTTTCAAATTCTT 290
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 240 GAAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGATTTC---T-C-- 293
Query 291 ATCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACAAATCTGTTCTAATTGACGATGGCAA 350
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 294 ATCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACGAATCTGTTCTAATCGACGATGGCAA 353
Query 351 AAAGAG-CTTATGGATAGAAAAAGCGAACGCGAAGAGATGTATCATGATATCAGCGATGA 409
|||| || |||| |||| |||||||| || ||||| ||||||||| |||||| ||||
Sbjct 354 AAAGTTTCT-ATGGTTAGAGAAAGCGAATGCAAAGAGGTGTATCATGTTATCAGAGATGT 412
Query 410 ACCT-TGCAATCGCGTGGGGGAATTCTCCTCAGAGTTGGCGATGGATTCCAGATCCTCAA 468
|||| | ||||| | ||||| |||| |||||||||||||| |||||||||||||||||||
Sbjct 413 ACCTCT-CAATCACTTGGGGAAATTATCCTCAGAGTTGGCAATGGATTCCAGATCCTCAA 471
Query 469 GCTAGGTTTGAAACAGTAGCGGAGCTACTTGAAGTATGTTTGTTTGAGATTCGTGGCAGA 528
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 472 GCTAGGTTTGAAACAGTAGCGGAGCTACTTGGAGTATGTTTGTTTGAGATTCGTGGCAGA 531
Query 529 ATAAATAGTCGTGTGA--TATCTCCAAAAACTCGTTACTCGGCTTACATTGTGTACAAGA 586
||||||||| || | ||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 532 ATAAATAGT--TGCAACCTATCTCCAAGAACTCGTTACTCGGCTTACATTATGTTCAGGA 589
Query 587 AATTGAATATATGTTATGGCTTTGAGAATGTAGCCGTAGAAGTTGTAGTTGGAGTGGTGG 646
|| | ||||||||||||||||||||||||| || |||||||||||||| ||| ||||||
Sbjct 590 AAAAGGATATATGTTATGGCTTTGAGAATGTGGCTGTAGAAGTTGTAGTAGGATTGGTGG 649
Query 647 GGCAGGATTTAGAAGAATCTTGTCGAAGATATATATGCTTTGATGAGACTATGGATGAGC 706
| |||||||||||||| ||||||| ||||||| |||||||||||||| ||| |||||||
Sbjct 650 GACAGGATTTAGAAGAGTCTTGTCCAAGATATGTATGCTTTGATGAGGCTACCGATGAGC 709
Query 707 AGTTTCGAAGGAGAGATAGGGGAAAGAACCTAGTAAAACCAGAGAGGAGAAAAGATGGGT 766
|||||||| ||||||| |||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 710 AGTTTCGATGGAGAGACAGGGGAAAGAACATAGTGAAACCAGAGTGGAGAAAAGATGGGT 769
Query 767 GGATGGAGATAAAGATTGGGGAATTCTTCAATGAAGGAGGATTATTGAACGATGATGAAA 826
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 770 GGATGGAGATAAAGCTTGGGGAGTTCTTCAATGAAGGAGGATTATTGAACTATGATGAAA 829
Query 827 TTGAGATGGTTGCTTTAGAGGCTAAGCAGCGTCATTGGAAACGTGGCTTGATCATTCAAG 886
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||
Sbjct 830 TTGAGATGGTTGCTTTAGAGAATAAGCAGCGCCATTGGAAACGTGGCTTGATCATTGGAG 889
Query 887 GAATTGAAATCCGTCCTACGAATATCCGGTAA 918
||||||||||||||| | ||||||||| ||||
Sbjct 890 GAATTGAAATCCGTCTTGCGAATATCCAGTAA 921
> Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122
Length=822
Score = 569 bits (308), Expect = 1e-161
Identities = 656/815 (80%), Gaps = 60/815 (7%)
Strand=Plus/Plus
Query 114 CTTACCGGAAGAATGTGTCT-CAATCATAGTCTCTTTCACAAGCCCTCAAGATGCGTGCG 172
||| ||||| ||||| ||| ||| |||| |||||||||||| || | ||||||||||
Sbjct 48 CTTGCCGGAGGAATGCATCTCCAA-CATAATCTCTTTCACAAATCCACGCGATGCGTGCG 106
Query 173 TC-CTTGCTTCGGTTTCGAAAACCTTTGCTTCGGCGGTCAAGTCAGATATTGTATGGGAG 231
|| | |||| | ||||||||||| |||| |||||||| |||||||||||| ||||||||
Sbjct 107 TCGC-TGCTACAGTTTCGAAAACGTTTGAATCGGCGGTGAAGTCAGATATTATATGGGAG 165
Query 232 AAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGCTTTCAAATTCTTA 291
|||||| ||||| | |||||||||||| ||||| ||| ||| ||| ||||| || |
Sbjct 166 AAGTTTCTTCCGGCGGAGTATGAATCTCTGATTCCTCCATCGCGATCTTTC----TC--A 219
Query 292 TCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACAAAT-CTGTTCTAATTGACGATGGCAA 350
||||||||||| ||||||||| |||| || || || |||||||||| |||||||||||
Sbjct 220 TCGAAGAAGGAACTCTATTTCTCTCTCTGTAAC-GATCCTGTTCTAATCGACGATGGCAA 278
Query 351 AAAGAGCTTATGGATAGAAAAAGCGAACGCGAAGAGATGTATCATGATATCAGCGATGAA 410
||||||| ||||| |||| ||||||| | |||||| ||| | |||||||| ||||||||
Sbjct 279 AAAGAGCATATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTCTGATGATATCTGCGATGAA 338
Query 411 CCT-TGCAATCGCGTGGGGGA-ATTCTCCTCA-GAGTTGGCGATGGATTCCAGA-TCCTC 466
||| | ||||| | ||||| || ||||||| | ||||| |||||||||| | ||||
Sbjct 339 CCTCT-CAATCATAT-GGGGAGATACTCCTCACTA-TTGGCAATGGATTCCA-ATTCCTG 394
Query 467 AAGCTAGGTTTGAAACAGTAGCGGAGCTACTTGAAGTATGTTTGTTTGAGATTCGTGGCA 526
|| |||||||||||| ||||||| |||| |||| ||||||| ||| |||||||||||||
Sbjct 395 AATCTAGGTTTGAAAAAGTAGCGAAGCTTGTTGATGTATGTTGGTTCGAGATTCGTGGCA 454
Query 527 GAATAAATAG-TCGTGTGATATCTCCAAAAACTCGTTACTCGGCTTACATTGTGTACAAG 585
||| ||| | |||||| ||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 455 GAACGAAT-GCTCGTGTCTTATCTCCAAGAACTCGTTACTCGGCTTATATTGTGTTCAAG 513
Query 586 AAATTGAATATATGTTATGGCTTTGAGAATGTAGCCGTAGAAG-TTGTAGTTGGAGTGGT 644
||| || | ||||||||||||| ||||||| || |||||| || ||||||| ||||
Sbjct 514 AAAGTG--GA-ATGTTATGGCTTTCAGAATGTGGCAATAGAAGCTT-CAGTTGGAATGGT 569
Query 645 GGGGCAGGATTTAGAAGAATCTTGTCGAAGATATATATGCTTTGATG-AGACTATGGATG 703
| ||| || ||| ||| | |||||| |||||||||||||| || |||| |
Sbjct 570 ---G--GGA--CAG--GAACCTTCTAGAAGATTTATATGCTTTGATGAAG-CTAT--A-- 615
Query 704 AGCAGTTTCGAAGGAGAGATAGGGGAAAGAACCTAGTAAAACCAGAGAGGAGA-A-AAGA 761
|| || | || || | || | || | |||| | || ||||| | |||||| | ||||
Sbjct 616 AGGAGATACG--GG-G-GA-A--GG-AGGAACTTTGTGAAACC-TA-AGGAGAGAGAAGA 665
Query 762 TGGGTGGATGGAGATAAAGATTGGGGAATTCTTCAATGAAGGAGGATTATTGAACGA-TG 820
|||||||||||||||| || ||||||||||||||| |||||||||| || |||| | ||
Sbjct 666 TGGGTGGATGGAGATAGAGCTTGGGGAATTCTTCATTGAAGGAGGAATAATGAA-TAGTG 724
Query 821 ATGAAATTGAGATG-GTTGCTTTAGAGGCTAAGCAGCGTC-ATTGGAAACGTGGCTTGAT 878
|||||||||||||| | |||||||||| |||||| || || ||||||| ||||||||||
Sbjct 725 ATGAAATTGAGATGAG-TGCTTTAGAGACTAAGCTGC-TCAATTGGAAGTGTGGCTTGAT 782
Query 879 CATTCAAGGAATTGAAATCCGTCCTACGAATATCC 913
||||||||||||||||||||| ||| | || ||||
Sbjct 783 CATTCAAGGAATTGAAATCCGCCCTGCCAAAATCC 817
> Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220
Length=828
Score = 414 bits (224), Expect = 5e-115
Identities = 628/812 (77%), Gaps = 71/812 (9%)
Strand=Plus/Plus
Query 114 CTTACCGGAAGAATGTGTCT-CAATCATAGTCTCTTTCACAAGCCCTCAAGATGCGTGCG 172
||| ||||| || || ||| ||| |||| |||||||||| || |||| ||| |||||||
Sbjct 54 CTTGCCGGAGGACTGCATCTCCAA-CATAATCTCTTTCACCAGTCCTCTAGACGCGTGCG 112
Query 173 TCCTTGCTTCGGTTTCGAAAAC-CTTTGCTTCGGCGGTCAAGTCAGATATTGTATGGGAG 231
| | |||||||||||| | || ||| | |||||| ||||||||||| |||||||||
Sbjct 113 TAGTCGCTTCGGTTTCG-AGACTCTTCGAAGCGGCGGCCAAGTCAGATACCGTATGGGAG 171
Query 232 AAGTTTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGCTTTCAAATTCTTA 291
|| ||| ||||||| || | ||||||| || || || ||| || | |||| || |
Sbjct 172 AAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCTGGATCGCGGGATTTC----TC--A 225
Query 292 TCGAAGAAGGAGCTCTATTTCGCTCTTTGCGACAAATCTG-TTCTAATTGACGATGGCAA 350
| ||||||||||||||||||||||||||||| | | || | ||||||| || |||| ||
Sbjct 226 TTGAAGAAGGAGCTCTATTTCGCTCTTTGCGGCGA-TCCGGTTCTAATCGATAATGG-AA 283
Query 351 AAA-GAGCTTATGGATAGAAAAAGCGAACGCGAAGA-GATGTATCATGATATCAGCG-AT 407
||| |||||| ||| |||| |||||||| | ||||| | ||||||||| ||| |||| ||
Sbjct 284 AAATGAGCTTCTGGTTAGATAAAGCGAATGGGAAGAAG-TGTATCATGTTATTAGCGGAT 342
Query 408 GAACCTT-GCAATCGCGTGGGG-GAAT-TCTCCTCAGAGTTGGCGAT-GGATTCCAGAT- 462
||||| | | || ||||| ||| | | | | ||||| || |||||| | ||
Sbjct 343 -AACCTCAGTA-TCATATGGGGAGAAAATATTGACC-A-TTGGC-ATTGGATTCGA-ATA 396
Query 463 CCTCAAGCTAGGTTTG-AAACAGTAGCGGAGCTACTT-GAAGTATGTTTGTTTGAGATTC 520
||| |||||||||||| ||| |||||||||||| | | ||||||| ||| |||||
Sbjct 397 CCTGAAGCTAGGTTTGGAAA-AGTAGCGGAGCTTGTCAGC-GTATGTTGGTTCAAGATTT 454
Query 521 GTGGCAGAATAAATAGTCGTGTGATATCTCCAAAAACTCGTTACTCGGCTTACATTGTGT 580
|||||||| | |||| | |||| |||||||| |||||||||||||||||||||||||||
Sbjct 455 GTGGCAGAGTGAATACTTGTGTCCTATCTCCAGAAACTCGTTACTCGGCTTACATTGTGT 514
Query 581 ACAAGAAATTGAAT-ATATGTTATGGCTTTGAGAATGTAGCCGTAGAAGTTGTAGTTGGA 639
||||||| | || | ||||||||||||||| |||| ||| |||||| || ||||||
Sbjct 515 TCAAGAAAGAGGATGAC-TGTTATGGCTTTGAGGATGTGGCCATAGAAGCTGCCGTTGGA 573
Query 640 GTGGTGGGGCAGGATTTAGAAGAATCTTGTCGAAGATAT-ATATGCTTTGATGAGACTAT 698
|||||||| || | ||| ||| | |||||| | ||||||||||||||| | |
Sbjct 574 GTGGTGGGACA---T---GAAC---CTTCTAGAAGAT-TCATATGCTTTGATGAG-C-A- 620
Query 699 GGATGAGCAGTTTCGAAGGAGAGATAGGGGAA--AG-AACCTAGTAAAACCAGAGAGGAG 755
| | ||| | || ||||| |||| || || |||||||| |||||||||| |||
Sbjct 621 GTTT------TTTAGGAG-AGAGA-AGGG-AATTAGTAACCTAGTGAAACCAGAGAAGAG 671
Query 756 AAAAGATGGGTGGATGGAGATAAAGATTGGGGAATTCTTCAATGAAGGAGGA-T-TATTG 813
| |||||| ||||||||||| || ||||||||||||||| |||||||| | | |||
Sbjct 672 ACGAGATGGATGGATGGAGATTGAGCTTGGGGAATTCTTCACTGAAGGAGAAATGTAT-- 729
Query 814 AACGATGATGAAATTGAGATG-GTTGCTTTAGAGGCTAAGCAGCGTCA-TTGGAAACGTG 871
| | ||||||||||||||| || ||| ||||| ||||| || ||| |||||| || |
Sbjct 730 A--G-TGATGAAATTGAGATAAGT-GCTCTAGAGACTAAGTTGC-TCAATTGGAAGCGCG 784
Query 872 GCTTGATCATTCAAGGAATTGAAATCCGTCCT 903
|||||||||||| |||||||||||||||||||
Sbjct 785 GCTTGATCATTCTAGGAATTGAAATCCGTCCT 816
> Ahg935977 jgi|Araly1|935977|scaffold_500168.1
Length=881
Score = 261 bits (141), Expect = 7e-69
Identities = 328/413 (79%), Gaps = 34/413 (8%)
Strand=Plus/Plus
Query 510 GTTTGAGATTCGTGGCAGAATAAATAGTCGTGTGATATCTCCAAAAACTCGTTACTCGGC 569
||| |||||||||||||||| |||| | |||| ||||||||| ||||||||||||||
Sbjct 453 GTTAGAGATTCGTGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTCGG- 511
Query 570 T-TACATTGTGTACAAGAAATTGAAT-ATATGTTATGGCTTTGAGAATGTAGCCGTAGAA 627
| |||||||||| | | ||| | || | |||||||||||||| | |||| || ||||||
Sbjct 512 TCTACATTGTGTTCGTGGAATCGGATCA-ATGTTATGGCTTTGCGGATGTGGCAGTAGAA 570
Query 628 GTTGTAGTTGGAGTGGTGGGGCAGGATTTAGAAGAATCTTGTCGAAGATAT-ATATGCTT 686
| || ||||||| |||| ||| | | | ||| ||| | |||||| | ||||| ||
Sbjct 571 GCTGAAGTTGGAATGGT-GGG-A-CA--T----GAACCTTCTAGAAGAT-TCATATGTTT 620
Query 687 TGATGAGA-CTATGGATGAGCAGTTTCGAAGGAGAGATAGG-GGAA--A-GAACCTAGTA 741
|||| | | ||||| ||| ||||||| || |||||| || |||| | | || | ||
Sbjct 621 TGAT-AAAGCTATGAATGGGCAGTTTATAACGAGAGA-CGGTGGAAGGAGGGACGTTGTG 678
Query 742 AAACCAGAGAGGAGA-A-AAGATGGGTGGATGGAGATAAAGATTGGGGAATTCTTCAATG 799
|||||| | |||||| | |||||||||||||||||||| || |||||||||||| |||||
Sbjct 679 AAACCA-A-AGGAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATG 736
Query 800 AAGGAGGATT-ATTGAACGA-TGATGAAATTGAGATG-GTTGCTTTAGAGGCTAAGCAGC 856
|||||||||| | |||| | |||||||||||||||| | ||| |||||| ||||| |
Sbjct 737 AAGGAGGATTGA-TGAA-TAGTGATGAAATTGAGATGAG-TGCCTTAGAGAATAAGC-GT 792
Query 857 GTCA-TTGGAAACGTGGCTTGATCATTCAAGGAATTGAAATCCGTCCTACGAA 908
||| ||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 793 ATCACTTGGAGGGGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAA 845
> Ahg935974 jgi|Araly1|935974|scaffold_500165.1
Length=378
Score = 243 bits (131), Expect = 2e-63
Identities = 291/361 (81%), Gaps = 39/361 (11%)
Strand=Plus/Plus
Query 3 GACCAAAACAAGG----TGCATGCATGAGCATTTTCGTAAAATT-GTACAACGAGTTAAG 57
||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 1 GACCAAAACAAGGTTCATGCATGCATGAGCATTTTCGT-AAATTGGTACAACGACTTAAG 59
Query 58 AAGACTCTTAGACTCTCAGCTTCCGACAAAAGTCACGGCGTTGCTGAG---TTG------ 108
|||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 60 AAGACTCTTAGACTCTCAGCTTCCGACAAAAGTCACGGCGTTACTGAGCCGTTGTCTTTA 119
Query 109 GATGACTTACCGGAAGAATGTGTCTCAATCATAGTCTCTTTCACAAGCCCTCAAGATGCG 168
||||| ||||||||||||||| |||| ||||| ||| ||||| |||||||| |||
Sbjct 120 GATGATTTACCGGAAGAATGTATCTCCCTCATAATCT-----ACAAGTCCTCAAGACGCG 174
Query 169 TGCGTCCTTG-CTTCGGTTTCGAAAACCTT--T--GCTTCGGCGGTC-AAGTCAGATATT 222
||||| ||| ||| ||||||||||||||| | | || | ||| || | ||||||
Sbjct 175 TGCGTT-TTGGCTTTGGTTTCGAAAACCTTAATTTGAATCTACTGTCCAAACC-GATATT 232
Query 223 GTATGGGAGAAGTTTATT---CCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGCT 279
|| ||||||||||||||| || || ||||||||||||||| ||||||||| | || |
Sbjct 233 GTGTGGGAGAAGTTTATTATTCCACCCGAGTATGAATCTTTGCGTTCTCAATCGCAAGAT 292
Query 280 TTCAAATTCTTATCGAAGAAGGAGCTCTATTTCGCTCTTT-GCGACAAATCTG-TTCTAA 337
||| | | ||||||||||||||||| ||||||| || ||||| |||||| || |||
Sbjct 293 TTC---T-C--ATCGAAGAAGGAGCTCTTTTTCGCTAATTCGCGACGAATCTGGTTTTAA 346
Query 338 T 338
|
Sbjct 347 T 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5