BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02350.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322564 jgi|Araly1|322564|fgenesh1_pm.C_scaffold_5000108 1122 0.0
Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122 555 3e-157
Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220 403 1e-111
Ahg935977 jgi|Araly1|935977|scaffold_500168.1 309 3e-83
> Ahg322564 jgi|Araly1|322564|fgenesh1_pm.C_scaffold_5000108
Length=927
Score = 1122 bits (607), Expect = 0.0
Identities = 809/904 (89%), Gaps = 23/904 (3%)
Strand=Plus/Plus
Query 1 AAAAATCGAAGCGAAAGCAGAAAAAAGATCG-TCTCTTCTACTCTCGATTCGTTGCCTGA 59
||||||||||||||||| |||| |||||||| | |||||| || ||||||||||||| ||
Sbjct 28 AAAAATCGAAGCGAAAGGAGAAGAAAGATCGAT-TCTTCTTCTTTCGATTCGTTGCCCGA 86
Query 60 GGGATGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCTTGCGTCGCTGCTGC 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 87 GGGATGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCTTGCGTCGCTGCTAC 146
Query 120 GGTTTCGAAGATCTTCGAATCGGCGGTGAAATCAGATATCGTATGGGAGAAGTTTCTTCC 179
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 147 GGTTTCGAAGATCTTTGAATCGGCGATGAAATCAGATATCGTATGGGAGAAGTTTCTTCC 206
Query 180 G-ACGGATTACGAATCTCTGATTACTCCGTCGCGAGTTTTCTCATCGAAGAAGGAACTCT 238
| | | |||| |||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 207 GGAAG-ATTATGAATCTCTGATTCCTCCTTCGCGAGTTTTCTCATCGAAGAAGGAACTCT 265
Query 239 ATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCAAAATGAGC-TTATGGTTA 297
|||||||||||||| |||||||||| |||||||| ||||||||| ||||| || |||||
Sbjct 266 ATTTCTCTCTCTGCGACGATCCTCTCCTAATCGACGATGGCAAATTGAGCGTT-TGGTTG 324
Query 298 GAGAAAGCGAGTGGGAAGAGATGCATAATGTTAT-CTGCAACTGC---GATGAATCTATC 353
|||||||||||||||||||| || |||||| || |||| ||||| ||||||| | ||
Sbjct 325 GAGAAAGCGAGTGGGAAGAGGTGTGTAATGT-ATTCTGCGACTGCAATGATGAATTTCTC 383
Query 354 AAGCATGGCAGATATGTCTCAGCGTTTCCTA-TGGATTCCA-TGTCCAGAATCTAGGTTT 411
|||||||| |||||| | ||| |||||| | ||||||||| | ||| ||| ||||||||
Sbjct 384 AAGCATGGGAGATATTTTTCAACGTTTCG-AGTGGATTCCAAT-TCCTGAAGCTAGGTTT 441
Query 412 GAAACAGTAGCGGC-GCTTCGCGAAGCATATAGGTTTGAGTTTAATTGCAGAATGAATAC 470
|||||||||||| | |||||||||||| | || |||| |||| |||||||||||||||||
Sbjct 442 GAAACAGTAGCG-CAGCTTCGCGAAGCTTGTAAGTTTAAGTTCAATTGCAGAATGAATAC 500
Query 471 TCGTGTCCTTTCTCTAAGAACTCGTTACTCGGTCTACATTGTGTTCAAGAAAGCGGATAA 530
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TCGTGTCCTTTCTCCAAGAACTCGTTACTCGGTCTACATTGTGTTCAAGAAAGCGGATAC 560
Query 531 TTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGTAGTTGGGATAGTGGGAGAGGAGTC 590
||| ||||| ||||||| ||||||| ||||||||||||||||| | |||||| |||| ||
Sbjct 561 TTGTTGTGGTTTTAAGGCTGTGTCTTTAGAGGCTGTAGTTGGGGTGGTGGGACAGGATTC 620
Query 591 TTTTAGAAGTTTCATATGCTTTGATACGCATGGGAAGGGGCAGGCTCGAAAGAGGAAAGT 650
||||||||| |||||||||||||||||||||| ||||||| || ||||||| |||||||
Sbjct 621 TTTTAGAAGATTCATATGCTTTGATACGCATGCGAAGGGGAAGTTTCGAAAGGGGAAAGT 680
Query 651 GGTGGCGAAACCAGAGTTGAGAGAAGATGGGTGGATGGAGACAGAGATTGGGGAATTCTA 710
||| | |||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 681 GGTTGTGAAACCAGAGTTGAGAGAAGATGGGTGGATGGAGGTAGAGCTTGGGGAATTCT- 739
Query 711 T-AATGAAGGAGGATTAATGAGTAGTGATGAGGTTGAGATAAGTACTGTAGAGGGTAAAT 769
| ||||||||||||| || ||||||||| ||||||| | |||||||||| ||||||
Sbjct 740 TCAATGAAGGAGGATGG--GA-TAGTGATGAAATTGAGATGACTACTGTAGAGCGTAAAT 796
Query 770 ACGCCCAGCAGAAGCGTGGTTTGGTCATTCTAGGAATTGAAATCCGTCCTGCGAAAATCC 829
| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 797 GCCCCCAGCAGAAGCGTGGTTTGGTCATTCTAGGAATTGAAATTCGTCCTACGAAAATCC 856
Query 830 TCGAGGAGTTTTCGGTTTGTCGTTTGTGAGGCCAAAACAAAGCGTTTAGTTCTAGAGATT 889
||||||||||||||| | || | |||||||||||||| ||||| ||||||||||||||||
Sbjct 857 TCGAGGAGTTTTCGGGTCGTTGCTTGTGAGGCCAAAAGAAAGC-TTTAGTTCTAGAGATT 915
Query 890 GAAA 893
||||
Sbjct 916 GAAA 919
> Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122
Length=822
Score = 555 bits (300), Expect = 3e-157
Identities = 650/811 (80%), Gaps = 55/811 (7%)
Strand=Plus/Plus
Query 44 TCGATTCGTTGCCTGAGGGATGCATTTCAAACATAATCTCTTTCACAAGTCC-TGAAGAC 102
||||||| ||||| |||| |||||| || ||||||||||||||||||| ||| | ||
Sbjct 41 TCGATTCCTTGCCGGAGGAATGCATCTCCAACATAATCTCTTTCACAAATCCACG-CGAT 99
Query 103 GCTTGCGTCGCTGCTGCGGTTTCGAAGATC-TTCGAATCGGCGGTGAAATCAGATATCGT 161
|| |||||||||||| | |||||||| | | || |||||||||||||| |||||||| |
Sbjct 100 GCGTGCGTCGCTGCTACAGTTTCGAA-AACGTTTGAATCGGCGGTGAAGTCAGATATTAT 158
Query 162 ATGGGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCGTCGCGAGT-TTTCT 220
||||||||||||||||||| |||| || |||||||||||| |||| |||||| | |||||
Sbjct 159 ATGGGAGAAGTTTCTTCCGGCGGAGTATGAATCTCTGATTCCTCCATCGCGA-TCTTTCT 217
Query 221 CATCGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCA 280
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 218 CATCGAAGAAGGAACTCTATTTCTCTCTCTGTAACGATCCTGTTCTAATCGACGATGGCA 277
Query 281 AAATGAGCTTATGGTTAGAGAAAGCGAGTGGGAAGAGATG-CATAATGTTATCTGCAACT 339
||| |||| |||||||||||||||||||||||||||| || | | ||| |||||||
Sbjct 278 AAAAGAGCATATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTC-TGATGATATCTGC---- 332
Query 340 GCGATGAATCTATCAAGCAT--GGC-AGATATGTC-TCAGCGT-TTC-CTATGGATTCCA 393
| ||||| || |||| ||| || ||||| || ||| | | || | ||||||||||
Sbjct 333 G--ATGAACCTCTCAATCATATGGGGAGATAC-TCCTCA-C-TATTGGCAATGGATTCCA 387
Query 394 -TGTCCAGAATCTAGGTTTGAAACAGTAGCGGCGCTTCGC-GAAGCATATAGGTTTGAGT 451
| ||| |||||||||||||||| ||||||| |||| | || | || | |||| |||
Sbjct 388 AT-TCCTGAATCTAGGTTTGAAAAAGTAGCGAAGCTT-GTTGATGTATGTTGGTTCGAGA 445
Query 452 TTAATTGCAGAATGAATACTCGTGTCCTT-TCTCTAAGAACTCGTTACTCGGTCT-ACAT 509
|| | |||||| |||| |||||||| || |||| ||||||||||||||||| || | ||
Sbjct 446 TTCGTGGCAGAACGAATGCTCGTGTC-TTATCTCCAAGAACTCGTTACTCGG-CTTATAT 503
Query 510 TGTGTTCAAGAAAGCGGATAATTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGT-AG 568
|||||||||||||| ||| | | | | ||||||| || |||| | ||||| ||| | ||
Sbjct 504 TGTGTTCAAGAAAGTGGA-A-T-GTTATGGCTTTCAGAATGTGGCAATAGAAGCT-TCAG 559
Query 569 TTGGGATAGTGGGAGAGGAGTCTTTTAGAAG-TTTCATATGCTTTGAT-ACGC-ATG-GG 624
|||| || |||||| |||| ||| |||||| ||| |||||||||||| | || || ||
Sbjct 560 TTGGAATGGTGGGACAGGAACCTTCTAGAAGATTT-ATATGCTTTGATGAAGCTATAAGG 618
Query 625 AAGGGGCAGGCTCGAAAGAGGAAAGTGGTGGCGAAACC-AGAGTTGAGAGAAGATGGGTG 683
| | | || ||| |||||| | ||| ||||| | || |||||||||||||||
Sbjct 619 A-GATACGGGG--GAAGGAGGAACTTTGTG---AAACCTA-AGGAGAGAGAAGATGGGTG 671
Query 684 GATGGAGACAGAGATTGGGGAATTCTATAAT-GAAGGAGGATTAATGAGTAGTGATGAGG 742
|||||||| |||| |||||||||||| | || ||||||||| |||||| |||||||||
Sbjct 672 GATGGAGATAGAGCTTGGGGAATTCT-TCATTGAAGGAGGAATAATGAATAGTGATGAAA 730
Query 743 TTGAGATAAGTACTGTAGAGGGTAAA-TACGCCCAGCAG-AAGCGTGGTTTGGTCATTCT 800
||||||| ||| || ||||| ||| | || || | ||| |||| ||| ||||||
Sbjct 731 TTGAGATGAGTGCTTTAGAGACTAAGCT--GCTCAATTGGAAGTGTGGCTTGATCATTCA 788
Query 801 AGGAATTGAAATCCGTCCTGCGAAAATCCTC 831
||||||||||||||| ||||| |||||||||
Sbjct 789 AGGAATTGAAATCCGCCCTGCCAAAATCCTC 819
> Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220
Length=828
Score = 403 bits (218), Expect = 1e-111
Identities = 625/812 (77%), Gaps = 66/812 (8%)
Strand=Plus/Plus
Query 47 ATTCGTTGCCTGAGGGA-TGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCT 105
|||| ||||| || ||| ||||| || ||||||||||||||||| |||||| ||||||
Sbjct 50 ATTCCTTGCCGGA-GGACTGCATCTCCAACATAATCTCTTTCACCAGTCCTCTAGACGCG 108
Query 106 TGCGTCGCT-GCTGCGGTTTCGAAGA-TCTTCGAATCGGCGGTGAAATCAGATATCGTAT 163
||||| | | ||| |||||||| ||| |||||||| |||||| || ||||||| |||||
Sbjct 109 TGCGTAG-TCGCTTCGGTTTCG-AGACTCTTCGAAGCGGCGGCCAAGTCAGATACCGTAT 166
Query 164 GGGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCG-TCGCGAGTTTTCTCA 222
||||||| ||||||||| |||||| ||||||||| || || | ||||| | |||||||
Sbjct 167 GGGAGAAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCT-GGATCGCGGGATTTCTCA 225
Query 223 TCGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGA-AGATGGCAA 281
| ||||||||| ||||||||| |||| ||| |||||| |||||||||| | |||| ||
Sbjct 226 TTGAAGAAGGAGCTCTATTTCGCTCTTTGCGGCGATCCGGTTCTAATCGATA-ATGGAAA 284
Query 282 AATGAGCTTATGGTTAGAGAAAGCGAGTGGGAAG-AGATGCATAATGTTATCTGCAACTG 340
||||||||| |||||||| ||||||| ||||||| || || || ||||||| | | | |
Sbjct 285 AATGAGCTTCTGGTTAGATAAAGCGAATGGGAAGAAG-TGTATCATGTTAT-T--AGC-G 339
Query 341 CGATGAA--TC--TATCAAGCAT-GGCAG-ATATGTCTCAGCGTT-TCCTATGGATTC-C 392
||| || || |||| | || || || | || | | | | || | | |||||||
Sbjct 340 -GAT-AACCTCAGTATC-A-TATGGGGAGAAAATAT-TGACCATTGGCAT-TGGATTCGA 393
Query 393 ATGTCCAGAATCTAGGTTT-GAAACAGTAGCGGCGCTTCGCGAAGC--ATATAGGTTTGA 449
|| || ||| |||||||| |||| |||||||| |||| | ||| || | |||| |
Sbjct 394 AT-ACCTGAAGCTAGGTTTGGAAA-AGTAGCGGAGCTT-G-TCAGCGTATGTTGGTTCAA 449
Query 450 G-TTTAATTGCAGAATGAATACTCGTGTCCTTTCTCTAAG-AACTCGTTACTCGGTC-TA 506
| ||| | ||||| |||||||| ||||||| |||| || |||||||||||||| | ||
Sbjct 450 GATTT-GTGGCAGAGTGAATACTTGTGTCCTATCTC-CAGAAACTCGTTACTCGG-CTTA 506
Query 507 CATTGTGTTCAAGAAAGCGGATAATTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGT 566
||||||||||||||||| |||| | || | ||||||| ||| |||| | ||||| ||||
Sbjct 507 CATTGTGTTCAAGAAAGAGGATGACTGTTATGGCTTTGAGGATGTGGCCATAGAAGCTGC 566
Query 567 AGTTGGGA-TAGTGGGAGAGGAGTCTTTTAGAAGTTTCATATGCTTTGAT-ACGCA--TG 622
||| ||| | |||||| | || ||| |||||| ||||||||||||||| | ||| |
Sbjct 567 CGTT-GGAGTGGTGGGACATGAACCTTCTAGAAGATTCATATGCTTTGATGA-GCAGTTT 624
Query 623 GGAAGG-G-GCAGGCTCGAAAGAGGAAAGTGGTGGCGAAACCAGAGTTGAGA-GAAGATG 679
||| | | || ||| || || | || |||||||||| |||| | |||||
Sbjct 625 TTTAGGAGAG-AGAAGGGAATTAGTAACCTAGT---GAAACCAGAGAAGAGACG-AGATG 679
Query 680 GGTGGATGGAGACAGAGATTGGGGAATTCTAT-AATGAAGGAGGATTAATG-AGTAGTGA 737
| |||||||||| ||| |||||||||||| | | ||||||| || |||| | ||||||
Sbjct 680 GATGGATGGAGATTGAGCTTGGGGAATTCT-TCACTGAAGGA-GA--AATGTA-TAGTGA 734
Query 738 TGAGGTTGAGATAAGTACTGTAGAGGGTAAATACGC-CCAGCAGAAGCGTGGTTTGGTCA 796
||| ||||||||||| || ||||| ||| | || | | |||||| || ||| |||
Sbjct 735 TGAAATTGAGATAAGTGCTCTAGAGACTAAGT-TGCTCAATTGGAAGCGCGGCTTGATCA 793
Query 797 TTCTAGGAATTGAAATCCGTCCTGCGAAAATC 828
||||||||||||||||||||||||| ||||||
Sbjct 794 TTCTAGGAATTGAAATCCGTCCTGCAAAAATC 825
> Ahg935977 jgi|Araly1|935977|scaffold_500168.1
Length=881
Score = 309 bits (167), Expect = 3e-83
Identities = 249/289 (86%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 46 GATTCGTTGCCTGAGGGATGCATTTCAAACATAATCTCTTTCACAAGTCC-TGAAGACGC 104
||||| ||||| || | |||||| | ||||||||||||||||||||||| | |||||
Sbjct 94 GATTCCTTGCCCGAAGAATGCATCCCCAACATAATCTCTTTCACAAGTCCACG-CGACGC 152
Query 105 TTGCGTCGCTGCTGCGGTTTCGAAGATCTTCGAATCGGCGGTGAAATCAGATATCGTATG 164
|||||||||||| || ||||||| | ||| |||||||||| ||||||||| |||||||
Sbjct 153 GTGCGTCGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGCCAAATCAGATTTCGTATG 212
Query 165 GGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCG-TCGCGAGTTTTCTCAT 223
|||||||||| ||||| ||||||| ||||||||| || || || ||||| | |||||||
Sbjct 213 GGAGAAGTTTATTCCGCCGGATTATGAATCTCTGGTTCCT-CGATCGCGGGAATTCTCAT 271
Query 224 CGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCAAAA 283
|||||||||| ||||||||| |||| || |||||||||||||||||||| ||||||||||
Sbjct 272 CGAAGAAGGAGCTCTATTTCGCTCTATGTAACGATCCTCTTCTAATCGATGATGGCAAAA 331
Query 284 TGAGCTTATGGTTAGAGAAAGCGAGTGGGAAGAGATGCATAATGTTATC 332
|||| | ||||||||||||||||||||||||||||| || ||||||||
Sbjct 332 AGAGCATCTGGTTAGAGAAAGCGAGTGGGAAGAGATGTATCATGTTATC 380
Score = 222 bits (120), Expect = 3e-57
Identities = 320/412 (78%), Gaps = 31/412 (8%)
Strand=Plus/Plus
Query 441 TAGGTTTGAGTTTAATTGCAGAATGAATACTCGTGTCCTTTCTCTAAGAACTCGTTACTC 500
|||||| ||| || | |||||| ||||||| ||||||| |||| |||||||||||||||
Sbjct 450 TAGGTTAGAGATTCGTGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTC 509
Query 501 GGTCTACATTGTGTTCAAGAAAGCGGAT-AATTGGTGTGGCTTTAAGGGTGTGTCTA-TA 558
|||||||||||||||| | || ||||| ||| | | ||||||| || |||| | | ||
Sbjct 510 GGTCTACATTGTGTTCGTGGAATCGGATCAAT-GTTATGGCTTTGCGGATGTGGC-AGTA 567
Query 559 GAGGCTGTAGTTGGGATAGTGGGAGAGGAGTCTTTTAGAAGTTTCATATGCTTTGATAC- 617
|| |||| |||||| || |||||| | || ||| |||||| |||||||| |||||||
Sbjct 568 GAAGCTGAAGTTGGAATGGTGGGACATGAACCTTCTAGAAGATTCATATGTTTTGATAAA 627
Query 618 GC-ATGGGAAGGGGCAGGCT----CGAAAGA-GG---AA--AGTG--GTGGCGAAACCAG 664
|| ||| || |||||| | ||| ||| || || || | || | |||||||
Sbjct 628 GCTATG--AATGGGCAGTTTATAACGAGAGACGGTGGAAGGAGGGACGTTGTGAAACCAA 685
Query 665 AGTTGAGAGAAGATGGGTGGATGGAGACAGAGATTGGGGAATTCTATAATGAAGGAGGAT 724
|| ||||||||||||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 686 AGGAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATGAAGGAGGAT 745
Query 725 TAATGAGTAGTGATGAGGTTGAGATAAGTAC-TGTAGAGGGTAAATACGCCCAGCA---G 780
| |||| ||||||||| ||||||| ||| | | ||||| || || || | || |
Sbjct 746 TGATGAATAGTGATGAAATTGAGATGAGTGCCT-TAGAG---AA-TAAGCGTATCACTTG 800
Query 781 AAGCG-TGGTTTGGTCATTCTAGGAATTGAAATCCGTCCTGCGAAAA-TCCT 830
|| | ||| ||| |||||| ||||||||||||||| |||||||||| ||||
Sbjct 801 GAGGGGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAAAAGTCCT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5