BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G02350.1 Length=1030 Score E Sequences producing significant alignments: (Bits) Value Ahg322564 jgi|Araly1|322564|fgenesh1_pm.C_scaffold_5000108 1122 0.0 Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122 555 3e-157 Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220 403 1e-111 Ahg935977 jgi|Araly1|935977|scaffold_500168.1 309 3e-83 > Ahg322564 jgi|Araly1|322564|fgenesh1_pm.C_scaffold_5000108 Length=927 Score = 1122 bits (607), Expect = 0.0 Identities = 809/904 (89%), Gaps = 23/904 (3%) Strand=Plus/Plus Query 1 AAAAATCGAAGCGAAAGCAGAAAAAAGATCG-TCTCTTCTACTCTCGATTCGTTGCCTGA 59 ||||||||||||||||| |||| |||||||| | |||||| || ||||||||||||| || Sbjct 28 AAAAATCGAAGCGAAAGGAGAAGAAAGATCGAT-TCTTCTTCTTTCGATTCGTTGCCCGA 86 Query 60 GGGATGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCTTGCGTCGCTGCTGC 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 87 GGGATGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCTTGCGTCGCTGCTAC 146 Query 120 GGTTTCGAAGATCTTCGAATCGGCGGTGAAATCAGATATCGTATGGGAGAAGTTTCTTCC 179 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 147 GGTTTCGAAGATCTTTGAATCGGCGATGAAATCAGATATCGTATGGGAGAAGTTTCTTCC 206 Query 180 G-ACGGATTACGAATCTCTGATTACTCCGTCGCGAGTTTTCTCATCGAAGAAGGAACTCT 238 | | | |||| |||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 207 GGAAG-ATTATGAATCTCTGATTCCTCCTTCGCGAGTTTTCTCATCGAAGAAGGAACTCT 265 Query 239 ATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCAAAATGAGC-TTATGGTTA 297 |||||||||||||| |||||||||| |||||||| ||||||||| ||||| || ||||| Sbjct 266 ATTTCTCTCTCTGCGACGATCCTCTCCTAATCGACGATGGCAAATTGAGCGTT-TGGTTG 324 Query 298 GAGAAAGCGAGTGGGAAGAGATGCATAATGTTAT-CTGCAACTGC---GATGAATCTATC 353 |||||||||||||||||||| || |||||| || |||| ||||| ||||||| | || Sbjct 325 GAGAAAGCGAGTGGGAAGAGGTGTGTAATGT-ATTCTGCGACTGCAATGATGAATTTCTC 383 Query 354 AAGCATGGCAGATATGTCTCAGCGTTTCCTA-TGGATTCCA-TGTCCAGAATCTAGGTTT 411 |||||||| |||||| | ||| |||||| | ||||||||| | ||| ||| |||||||| Sbjct 384 AAGCATGGGAGATATTTTTCAACGTTTCG-AGTGGATTCCAAT-TCCTGAAGCTAGGTTT 441 Query 412 GAAACAGTAGCGGC-GCTTCGCGAAGCATATAGGTTTGAGTTTAATTGCAGAATGAATAC 470 |||||||||||| | |||||||||||| | || |||| |||| ||||||||||||||||| Sbjct 442 GAAACAGTAGCG-CAGCTTCGCGAAGCTTGTAAGTTTAAGTTCAATTGCAGAATGAATAC 500 Query 471 TCGTGTCCTTTCTCTAAGAACTCGTTACTCGGTCTACATTGTGTTCAAGAAAGCGGATAA 530 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 TCGTGTCCTTTCTCCAAGAACTCGTTACTCGGTCTACATTGTGTTCAAGAAAGCGGATAC 560 Query 531 TTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGTAGTTGGGATAGTGGGAGAGGAGTC 590 ||| ||||| ||||||| ||||||| ||||||||||||||||| | |||||| |||| || Sbjct 561 TTGTTGTGGTTTTAAGGCTGTGTCTTTAGAGGCTGTAGTTGGGGTGGTGGGACAGGATTC 620 Query 591 TTTTAGAAGTTTCATATGCTTTGATACGCATGGGAAGGGGCAGGCTCGAAAGAGGAAAGT 650 ||||||||| |||||||||||||||||||||| ||||||| || ||||||| ||||||| Sbjct 621 TTTTAGAAGATTCATATGCTTTGATACGCATGCGAAGGGGAAGTTTCGAAAGGGGAAAGT 680 Query 651 GGTGGCGAAACCAGAGTTGAGAGAAGATGGGTGGATGGAGACAGAGATTGGGGAATTCTA 710 ||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 681 GGTTGTGAAACCAGAGTTGAGAGAAGATGGGTGGATGGAGGTAGAGCTTGGGGAATTCT- 739 Query 711 T-AATGAAGGAGGATTAATGAGTAGTGATGAGGTTGAGATAAGTACTGTAGAGGGTAAAT 769 | ||||||||||||| || ||||||||| ||||||| | |||||||||| |||||| Sbjct 740 TCAATGAAGGAGGATGG--GA-TAGTGATGAAATTGAGATGACTACTGTAGAGCGTAAAT 796 Query 770 ACGCCCAGCAGAAGCGTGGTTTGGTCATTCTAGGAATTGAAATCCGTCCTGCGAAAATCC 829 | |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 797 GCCCCCAGCAGAAGCGTGGTTTGGTCATTCTAGGAATTGAAATTCGTCCTACGAAAATCC 856 Query 830 TCGAGGAGTTTTCGGTTTGTCGTTTGTGAGGCCAAAACAAAGCGTTTAGTTCTAGAGATT 889 ||||||||||||||| | || | |||||||||||||| ||||| |||||||||||||||| Sbjct 857 TCGAGGAGTTTTCGGGTCGTTGCTTGTGAGGCCAAAAGAAAGC-TTTAGTTCTAGAGATT 915 Query 890 GAAA 893 |||| Sbjct 916 GAAA 919 > Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122 Length=822 Score = 555 bits (300), Expect = 3e-157 Identities = 650/811 (80%), Gaps = 55/811 (7%) Strand=Plus/Plus Query 44 TCGATTCGTTGCCTGAGGGATGCATTTCAAACATAATCTCTTTCACAAGTCC-TGAAGAC 102 ||||||| ||||| |||| |||||| || ||||||||||||||||||| ||| | || Sbjct 41 TCGATTCCTTGCCGGAGGAATGCATCTCCAACATAATCTCTTTCACAAATCCACG-CGAT 99 Query 103 GCTTGCGTCGCTGCTGCGGTTTCGAAGATC-TTCGAATCGGCGGTGAAATCAGATATCGT 161 || |||||||||||| | |||||||| | | || |||||||||||||| |||||||| | Sbjct 100 GCGTGCGTCGCTGCTACAGTTTCGAA-AACGTTTGAATCGGCGGTGAAGTCAGATATTAT 158 Query 162 ATGGGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCGTCGCGAGT-TTTCT 220 ||||||||||||||||||| |||| || |||||||||||| |||| |||||| | ||||| Sbjct 159 ATGGGAGAAGTTTCTTCCGGCGGAGTATGAATCTCTGATTCCTCCATCGCGA-TCTTTCT 217 Query 221 CATCGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCA 280 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct 218 CATCGAAGAAGGAACTCTATTTCTCTCTCTGTAACGATCCTGTTCTAATCGACGATGGCA 277 Query 281 AAATGAGCTTATGGTTAGAGAAAGCGAGTGGGAAGAGATG-CATAATGTTATCTGCAACT 339 ||| |||| |||||||||||||||||||||||||||| || | | ||| ||||||| Sbjct 278 AAAAGAGCATATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTC-TGATGATATCTGC---- 332 Query 340 GCGATGAATCTATCAAGCAT--GGC-AGATATGTC-TCAGCGT-TTC-CTATGGATTCCA 393 | ||||| || |||| ||| || ||||| || ||| | | || | |||||||||| Sbjct 333 G--ATGAACCTCTCAATCATATGGGGAGATAC-TCCTCA-C-TATTGGCAATGGATTCCA 387 Query 394 -TGTCCAGAATCTAGGTTTGAAACAGTAGCGGCGCTTCGC-GAAGCATATAGGTTTGAGT 451 | ||| |||||||||||||||| ||||||| |||| | || | || | |||| ||| Sbjct 388 AT-TCCTGAATCTAGGTTTGAAAAAGTAGCGAAGCTT-GTTGATGTATGTTGGTTCGAGA 445 Query 452 TTAATTGCAGAATGAATACTCGTGTCCTT-TCTCTAAGAACTCGTTACTCGGTCT-ACAT 509 || | |||||| |||| |||||||| || |||| ||||||||||||||||| || | || Sbjct 446 TTCGTGGCAGAACGAATGCTCGTGTC-TTATCTCCAAGAACTCGTTACTCGG-CTTATAT 503 Query 510 TGTGTTCAAGAAAGCGGATAATTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGT-AG 568 |||||||||||||| ||| | | | | ||||||| || |||| | ||||| ||| | || Sbjct 504 TGTGTTCAAGAAAGTGGA-A-T-GTTATGGCTTTCAGAATGTGGCAATAGAAGCT-TCAG 559 Query 569 TTGGGATAGTGGGAGAGGAGTCTTTTAGAAG-TTTCATATGCTTTGAT-ACGC-ATG-GG 624 |||| || |||||| |||| ||| |||||| ||| |||||||||||| | || || || Sbjct 560 TTGGAATGGTGGGACAGGAACCTTCTAGAAGATTT-ATATGCTTTGATGAAGCTATAAGG 618 Query 625 AAGGGGCAGGCTCGAAAGAGGAAAGTGGTGGCGAAACC-AGAGTTGAGAGAAGATGGGTG 683 | | | || ||| |||||| | ||| ||||| | || ||||||||||||||| Sbjct 619 A-GATACGGGG--GAAGGAGGAACTTTGTG---AAACCTA-AGGAGAGAGAAGATGGGTG 671 Query 684 GATGGAGACAGAGATTGGGGAATTCTATAAT-GAAGGAGGATTAATGAGTAGTGATGAGG 742 |||||||| |||| |||||||||||| | || ||||||||| |||||| ||||||||| Sbjct 672 GATGGAGATAGAGCTTGGGGAATTCT-TCATTGAAGGAGGAATAATGAATAGTGATGAAA 730 Query 743 TTGAGATAAGTACTGTAGAGGGTAAA-TACGCCCAGCAG-AAGCGTGGTTTGGTCATTCT 800 ||||||| ||| || ||||| ||| | || || | ||| |||| ||| |||||| Sbjct 731 TTGAGATGAGTGCTTTAGAGACTAAGCT--GCTCAATTGGAAGTGTGGCTTGATCATTCA 788 Query 801 AGGAATTGAAATCCGTCCTGCGAAAATCCTC 831 ||||||||||||||| ||||| ||||||||| Sbjct 789 AGGAATTGAAATCCGCCCTGCCAAAATCCTC 819 > Ahg330877 jgi|Araly1|330877|fgenesh1_pm.C_scaffold_8000220 Length=828 Score = 403 bits (218), Expect = 1e-111 Identities = 625/812 (77%), Gaps = 66/812 (8%) Strand=Plus/Plus Query 47 ATTCGTTGCCTGAGGGA-TGCATTTCAAACATAATCTCTTTCACAAGTCCTGAAGACGCT 105 |||| ||||| || ||| ||||| || ||||||||||||||||| |||||| |||||| Sbjct 50 ATTCCTTGCCGGA-GGACTGCATCTCCAACATAATCTCTTTCACCAGTCCTCTAGACGCG 108 Query 106 TGCGTCGCT-GCTGCGGTTTCGAAGA-TCTTCGAATCGGCGGTGAAATCAGATATCGTAT 163 ||||| | | ||| |||||||| ||| |||||||| |||||| || ||||||| ||||| Sbjct 109 TGCGTAG-TCGCTTCGGTTTCG-AGACTCTTCGAAGCGGCGGCCAAGTCAGATACCGTAT 166 Query 164 GGGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCG-TCGCGAGTTTTCTCA 222 ||||||| ||||||||| |||||| ||||||||| || || | ||||| | ||||||| Sbjct 167 GGGAGAAATTTCTTCCGCCGGATTGTGAATCTCTGGTTCCT-GGATCGCGGGATTTCTCA 225 Query 223 TCGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGA-AGATGGCAA 281 | ||||||||| ||||||||| |||| ||| |||||| |||||||||| | |||| || Sbjct 226 TTGAAGAAGGAGCTCTATTTCGCTCTTTGCGGCGATCCGGTTCTAATCGATA-ATGGAAA 284 Query 282 AATGAGCTTATGGTTAGAGAAAGCGAGTGGGAAG-AGATGCATAATGTTATCTGCAACTG 340 ||||||||| |||||||| ||||||| ||||||| || || || ||||||| | | | | Sbjct 285 AATGAGCTTCTGGTTAGATAAAGCGAATGGGAAGAAG-TGTATCATGTTAT-T--AGC-G 339 Query 341 CGATGAA--TC--TATCAAGCAT-GGCAG-ATATGTCTCAGCGTT-TCCTATGGATTC-C 392 ||| || || |||| | || || || | || | | | | || | | ||||||| Sbjct 340 -GAT-AACCTCAGTATC-A-TATGGGGAGAAAATAT-TGACCATTGGCAT-TGGATTCGA 393 Query 393 ATGTCCAGAATCTAGGTTT-GAAACAGTAGCGGCGCTTCGCGAAGC--ATATAGGTTTGA 449 || || ||| |||||||| |||| |||||||| |||| | ||| || | |||| | Sbjct 394 AT-ACCTGAAGCTAGGTTTGGAAA-AGTAGCGGAGCTT-G-TCAGCGTATGTTGGTTCAA 449 Query 450 G-TTTAATTGCAGAATGAATACTCGTGTCCTTTCTCTAAG-AACTCGTTACTCGGTC-TA 506 | ||| | ||||| |||||||| ||||||| |||| || |||||||||||||| | || Sbjct 450 GATTT-GTGGCAGAGTGAATACTTGTGTCCTATCTC-CAGAAACTCGTTACTCGG-CTTA 506 Query 507 CATTGTGTTCAAGAAAGCGGATAATTGGTGTGGCTTTAAGGGTGTGTCTATAGAGGCTGT 566 ||||||||||||||||| |||| | || | ||||||| ||| |||| | ||||| |||| Sbjct 507 CATTGTGTTCAAGAAAGAGGATGACTGTTATGGCTTTGAGGATGTGGCCATAGAAGCTGC 566 Query 567 AGTTGGGA-TAGTGGGAGAGGAGTCTTTTAGAAGTTTCATATGCTTTGAT-ACGCA--TG 622 ||| ||| | |||||| | || ||| |||||| ||||||||||||||| | ||| | Sbjct 567 CGTT-GGAGTGGTGGGACATGAACCTTCTAGAAGATTCATATGCTTTGATGA-GCAGTTT 624 Query 623 GGAAGG-G-GCAGGCTCGAAAGAGGAAAGTGGTGGCGAAACCAGAGTTGAGA-GAAGATG 679 ||| | | || ||| || || | || |||||||||| |||| | ||||| Sbjct 625 TTTAGGAGAG-AGAAGGGAATTAGTAACCTAGT---GAAACCAGAGAAGAGACG-AGATG 679 Query 680 GGTGGATGGAGACAGAGATTGGGGAATTCTAT-AATGAAGGAGGATTAATG-AGTAGTGA 737 | |||||||||| ||| |||||||||||| | | ||||||| || |||| | |||||| Sbjct 680 GATGGATGGAGATTGAGCTTGGGGAATTCT-TCACTGAAGGA-GA--AATGTA-TAGTGA 734 Query 738 TGAGGTTGAGATAAGTACTGTAGAGGGTAAATACGC-CCAGCAGAAGCGTGGTTTGGTCA 796 ||| ||||||||||| || ||||| ||| | || | | |||||| || ||| ||| Sbjct 735 TGAAATTGAGATAAGTGCTCTAGAGACTAAGT-TGCTCAATTGGAAGCGCGGCTTGATCA 793 Query 797 TTCTAGGAATTGAAATCCGTCCTGCGAAAATC 828 ||||||||||||||||||||||||| |||||| Sbjct 794 TTCTAGGAATTGAAATCCGTCCTGCAAAAATC 825 > Ahg935977 jgi|Araly1|935977|scaffold_500168.1 Length=881 Score = 309 bits (167), Expect = 3e-83 Identities = 249/289 (86%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 46 GATTCGTTGCCTGAGGGATGCATTTCAAACATAATCTCTTTCACAAGTCC-TGAAGACGC 104 ||||| ||||| || | |||||| | ||||||||||||||||||||||| | ||||| Sbjct 94 GATTCCTTGCCCGAAGAATGCATCCCCAACATAATCTCTTTCACAAGTCCACG-CGACGC 152 Query 105 TTGCGTCGCTGCTGCGGTTTCGAAGATCTTCGAATCGGCGGTGAAATCAGATATCGTATG 164 |||||||||||| || ||||||| | ||| |||||||||| ||||||||| ||||||| Sbjct 153 GTGCGTCGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGCCAAATCAGATTTCGTATG 212 Query 165 GGAGAAGTTTCTTCCGACGGATTACGAATCTCTGATTACTCCG-TCGCGAGTTTTCTCAT 223 |||||||||| ||||| ||||||| ||||||||| || || || ||||| | ||||||| Sbjct 213 GGAGAAGTTTATTCCGCCGGATTATGAATCTCTGGTTCCT-CGATCGCGGGAATTCTCAT 271 Query 224 CGAAGAAGGAACTCTATTTCTCTCTCTGCAACGATCCTCTTCTAATCGAAGATGGCAAAA 283 |||||||||| ||||||||| |||| || |||||||||||||||||||| |||||||||| Sbjct 272 CGAAGAAGGAGCTCTATTTCGCTCTATGTAACGATCCTCTTCTAATCGATGATGGCAAAA 331 Query 284 TGAGCTTATGGTTAGAGAAAGCGAGTGGGAAGAGATGCATAATGTTATC 332 |||| | ||||||||||||||||||||||||||||| || |||||||| Sbjct 332 AGAGCATCTGGTTAGAGAAAGCGAGTGGGAAGAGATGTATCATGTTATC 380 Score = 222 bits (120), Expect = 3e-57 Identities = 320/412 (78%), Gaps = 31/412 (8%) Strand=Plus/Plus Query 441 TAGGTTTGAGTTTAATTGCAGAATGAATACTCGTGTCCTTTCTCTAAGAACTCGTTACTC 500 |||||| ||| || | |||||| ||||||| ||||||| |||| ||||||||||||||| Sbjct 450 TAGGTTAGAGATTCGTGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTC 509 Query 501 GGTCTACATTGTGTTCAAGAAAGCGGAT-AATTGGTGTGGCTTTAAGGGTGTGTCTA-TA 558 |||||||||||||||| | || ||||| ||| | | ||||||| || |||| | | || Sbjct 510 GGTCTACATTGTGTTCGTGGAATCGGATCAAT-GTTATGGCTTTGCGGATGTGGC-AGTA 567 Query 559 GAGGCTGTAGTTGGGATAGTGGGAGAGGAGTCTTTTAGAAGTTTCATATGCTTTGATAC- 617 || |||| |||||| || |||||| | || ||| |||||| |||||||| ||||||| Sbjct 568 GAAGCTGAAGTTGGAATGGTGGGACATGAACCTTCTAGAAGATTCATATGTTTTGATAAA 627 Query 618 GC-ATGGGAAGGGGCAGGCT----CGAAAGA-GG---AA--AGTG--GTGGCGAAACCAG 664 || ||| || |||||| | ||| ||| || || || | || | ||||||| Sbjct 628 GCTATG--AATGGGCAGTTTATAACGAGAGACGGTGGAAGGAGGGACGTTGTGAAACCAA 685 Query 665 AGTTGAGAGAAGATGGGTGGATGGAGACAGAGATTGGGGAATTCTATAATGAAGGAGGAT 724 || ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| Sbjct 686 AGGAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATGAAGGAGGAT 745 Query 725 TAATGAGTAGTGATGAGGTTGAGATAAGTAC-TGTAGAGGGTAAATACGCCCAGCA---G 780 | |||| ||||||||| ||||||| ||| | | ||||| || || || | || | Sbjct 746 TGATGAATAGTGATGAAATTGAGATGAGTGCCT-TAGAG---AA-TAAGCGTATCACTTG 800 Query 781 AAGCG-TGGTTTGGTCATTCTAGGAATTGAAATCCGTCCTGCGAAAA-TCCT 830 || | ||| ||| |||||| ||||||||||||||| |||||||||| |||| Sbjct 801 GAGGGGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAAAAGTCCT 852 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38313531585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5