BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02360.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122 1179 0.0
Ahg322563 jgi|Araly1|322563|fgenesh1_pm.C_scaffold_5000107 547 6e-155
Ahg935972 jgi|Araly1|935972|scaffold_500163.1 472 3e-132
Ahg935977 jgi|Araly1|935977|scaffold_500168.1 427 8e-119
> Ahg346730 jgi|Araly1|346730|fgenesh1_pg.C_scaffold_5000122
Length=822
Score = 1179 bits (638), Expect = 0.0
Identities = 766/826 (93%), Gaps = 15/826 (2%)
Strand=Plus/Plus
Query 33 ATGGGGAGAAAACGCAGAGTTAAATCGGAGTCGTCTCCGTTCGATTCATTTCCGGAAGAT 92
||||||||||||||||| |||| |||||||| ||| ||||||||||| || ||||| ||
Sbjct 1 ATGGGGAGAAAACGCAGCGTTACATCGGAGTGGTCGCCGTTCGATTCCTTGCCGGAGGAA 60
Query 93 TGCATCTCCTACATAATCTCTTTTACAAATCCACGCGATGCGTGCGTCGCTGCTACGGTT 152
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 TGCATCTCCAACATAATCTCTTTCACAAATCCACGCGATGCGTGCGTCGCTGCTACAGTT 120
Query 153 TCGAAAACGTTTGAATCGACGGTGAAGTCAGATATTATATGGGAGAAGTTTCTTCCGGCG 212
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGAAAACGTTTGAATCGGCGGTGAAGTCAGATATTATATGGGAGAAGTTTCTTCCGGCG 180
Query 213 GATTATGAATCTCTGATTCCTCCATCGCGAGT-TTTCTCATCGAAGAAGGAGCTCTATTT 271
|| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 181 GAGTATGAATCTCTGATTCCTCCATCGCGA-TCTTTCTCATCGAAGAAGGAACTCTATTT 239
Query 272 CTCTCTCTGTAACGATCCTGTTCTATTCGACGATGACAAAAAGAGCGTATGGTTAGAGAA 331
||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct 240 CTCTCTCTGTAACGATCCTGTTCTAATCGACGATGGCAAAAAGAGCATATGGTTAGAGAA 299
Query 332 AGCGAGTGGGAAGAGGTGTCTGATGTTATCTGCGATGAACCTCTCAATCATATGGGGAGA 391
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 AGCGAGTGGGAAGAGGTGTCTGATGATATCTGCGATGAACCTCTCAATCATATGGGGAGA 359
Query 392 TAATCCTCAGTATTGGCAATGGATTCCAATTCCTGAATCTAGGTTTGAAAAAGTAGCGAA 451
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TACTCCTCACTATTGGCAATGGATTCCAATTCCTGAATCTAGGTTTGAAAAAGTAGCGAA 419
Query 452 ACTTCGC-GATGTATGTTGGTTCGAGATTCGTGGCAGAACGAATACTCGTGTATTATCTC 510
||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 420 GCTT-GTTGATGTATGTTGGTTCGAGATTCGTGGCAGAACGAATGCTCGTGTCTTATCTC 478
Query 511 CAAGAACTCGTTACTCGGCTTATATTGTGTTCAAGGGAGTGGATAAATGTTATGGCTTTC 570
||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 479 CAAGAACTCGTTACTCGGCTTATATTGTGTTCAAGAAAGTGGA-A--TGTTATGGCTTTC 535
Query 571 AGAATGTGGCCATAGAAGCTGCGGTAGGAGTGGTGGGACAGGAGCCTTCTAGAAGATTAA 630
|||||||||| ||||||||| | || ||| ||||||||||||| |||||||||||||| |
Sbjct 536 AGAATGTGGCAATAGAAGCTTCAGTTGGAATGGTGGGACAGGAACCTTCTAGAAGATTTA 595
Query 631 TATGCTTT-AGTGAAGCTATAAGGAG----GGG--AAGGAGGAACGTTGTGAAACCTAAG 683
|||||||| | ||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 596 TATGCTTTGA-TGAAGCTATAAGGAGATACGGGGGAAGGAGGAACTTTGTGAAACCTAAG 654
Query 684 CAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAGTTCTTCAATGATGGAGGAATA 743
||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||
Sbjct 655 GAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTTCATTGAAGGAGGAATA 714
Query 744 ATGGATAATGATGAAATTGAGATGAGTGCTTTAGAGACTAAGCAGCTCAATCGGAAGTGT 803
||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 715 ATGAATAGTGATGAAATTGAGATGAGTGCTTTAGAGACTAAGCTGCTCAATTGGAAGTGT 774
Query 804 GGCTTGATCATTCAAGGAATTGAAATCCGACCTGCTAAAATCCTCT 849
||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 775 GGCTTGATCATTCAAGGAATTGAAATCCGCCCTGCCAAAATCCTCT 820
> Ahg322563 jgi|Araly1|322563|fgenesh1_pm.C_scaffold_5000107
Length=921
Score = 547 bits (296), Expect = 6e-155
Identities = 646/806 (80%), Gaps = 59/806 (7%)
Strand=Plus/Plus
Query 84 CCGGAAGATTGCATCTCCTA-CATAATCTCTTTTACAAATCCACGCGATGCGTGCGTCGC 142
|||||||| || |||||| | |||||||||||| |||| ||| | |||||||||||| |
Sbjct 127 CCGGAAGAATGTATCTCC-ATCATAATCTCTTTCACAAGTCCTCTAGATGCGTGCGTC-C 184
Query 143 -TGCTACGGTTTCGAAAACGTTTGAATCGACGGTGAAGTCAGATATTATATGGGAGAAGT 201
|||| | ||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||
Sbjct 185 TTGCTTCCGTTTCGAAAACCTTTGAATCGGCGGCCAAGCCAGATATCGTATGGGAGAAGT 244
Query 202 TTCTTCCGGCGGATTATGAATCTCTGATTCCTCCATCGCGAGTTTTCTCATCGAAGAAGG 261
|| ||||| | || ||||||||| ||||| ||| ||| |||| |||||||||||||||||
Sbjct 245 TTATTCCGCCAGAGTATGAATCTTTGATTTCTCAATCCCGAGATTTCTCATCGAAGAAGG 304
Query 262 AGCTCTATTTCTCTCTCTGTAACGA-TCCTGTTCTATTCGACGATGACAAAAAGAG-CGT 319
||||||||||| |||| || |||| || ||||||| ||||||||| ||||||| | |
Sbjct 305 AGCTCTATTTCGCTCTTTGCGACGAATC-TGTTCTAATCGACGATGGCAAAAAGTTTC-T 362
Query 320 ATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTCTGATGTTATCTGCGATGAACCTCTCAAT 379
||||||||||||||||| || ||||||||| | |||||||| | |||| ||||||||||
Sbjct 363 ATGGTTAGAGAAAGCGAATGCAAAGAGGTGTATCATGTTATCAGAGATGTACCTCTCAAT 422
Query 380 CA-TATGGGGAGATAATCCTCAGTA-TTGGCAATGGATTCCA-ATTCCTGAATCTAGGTT 436
|| | |||||| || |||||||| | |||||||||||||||| || ||| || |||||||
Sbjct 423 CACT-TGGGGAAATTATCCTCAG-AGTTGGCAATGGATTCCAGAT-CCTCAAGCTAGGTT 479
Query 437 TGAAAAAGTAGCGAAACTTCGCG-ATGTATGTTGGTTCGAGATTCGTGGCAGAACGAATA 495
||||| ||||||| | || | | | ||||||| ||| |||||||||||||||| ||||
Sbjct 480 TGAAACAGTAGCGGAGCTACTTGGA-GTATGTTTGTTTGAGATTCGTGGCAGAATAAATA 538
Query 496 CTCGTGTAT--TATCTCCAAGAACTCGTTACTCGGCTTATATTGTGTTCAAGGGAGT-GG 552
| || | |||||||||||||||||||||||||||| ||| |||||| || | ||
Sbjct 539 GT--TGCAACCTATCTCCAAGAACTCGTTACTCGGCTTACATTATGTTCA-GGAAAAAGG 595
Query 553 ATAAATGTTATGGCTTTCAGAATGTGGCCATAGAAGCTGCGGTAGGAGTGGTGGGACAGG 612
||| ||||||||||||| |||||||||| |||||| || |||||| ||||||||||||
Sbjct 596 ATATATGTTATGGCTTTGAGAATGTGGCTGTAGAAGTTGTAGTAGGATTGGTGGGACAGG 655
Query 613 A----GCCT--TCTAG---AAGAT-TAATATGCTTT-AGTGAAGCTA----T-A--AG-- 652
| | ||| | ||||| | |||||||| | ||| |||| | | ||
Sbjct 656 ATTTAGAAGAGTCTTGTCCAAGATATG-TATGCTTTGA-TGAGGCTACCGATGAGCAGTT 713
Query 653 --GA-GG-G-GA-AGGAG---GAACGTTGTGAAACCTA-AGCAGAGAGAAGATGGGTGGA 702
|| || | || ||| | |||| | |||||||| | || |||| ||||||||||||
Sbjct 714 TCGATGGAGAGACAGGGGAAAGAACATAGTGAAACC-AGAGTGGAGAAAAGATGGGTGGA 772
Query 703 TGGAGATTGAGCTTGGGGAGTTCTTCAATGATGGAGGAATAATGGA-TAATGATGAAATT 761
||||||| |||||||||||||||||||||| |||||| || || | || ||||||||||
Sbjct 773 TGGAGATAAAGCTTGGGGAGTTCTTCAATGAAGGAGGATTATTGAACTA-TGATGAAATT 831
Query 762 GAGATGAGT-GCTTTAGAGACTAAGCAGCTCAATCGGAAGTGTGGCTTGATCATTCAAGG 820
|||||| || |||||||||| |||||||| | || |||| |||||||||||||| |||
Sbjct 832 GAGATG-GTTGCTTTAGAGAATAAGCAGCGCCATTGGAAACGTGGCTTGATCATTGGAGG 890
Query 821 AATTGAAATCCGACCTGCTAAAATCC 846
|||||||||||| | ||| || ||||
Sbjct 891 AATTGAAATCCGTCTTGCGAATATCC 916
> Ahg935972 jgi|Araly1|935972|scaffold_500163.1
Length=560
Score = 472 bits (255), Expect = 3e-132
Identities = 450/539 (83%), Gaps = 33/539 (6%)
Strand=Plus/Plus
Query 335 GAGTGGGAAGAGGTGTCTGATGTTATCTGCGATGAACCTCTCAATCATATGGGGAGATAA 394
|||||||||||||||| | |||||||| ||||||||| |||||||| |||||||||| |
Sbjct 2 GAGTGGGAAGAGGTGTATCATGTTATCAGCGATGAACTTCTCAATCGCATGGGGAGATGA 61
Query 395 TCCTCAG-TATTGGCAATGGATTCCAATTCCTGAATCTAGGTTTGAAAAAGTAGCGAAAC 453
||||| | ||||||||||||||| |||| ||||||||||||||||||||||| ||| | |
Sbjct 62 TCCTC-GCTATTGGCAATGGATTTCAATCCCTGAATCTAGGTTTGAAAAAGTTGCGGAGC 120
Query 454 TTCGCGATGTATGTTGGTTCGA-GATTCGTGGC-AGAACGAATACTCGTGTATTATCTCC 511
||| | | || ||||||||||| | |||||||| || || |||||||| || |||||||
Sbjct 121 TTCTCCAGGTTTGTTGGTTCGATG-TTCGTGGCAAG-ACAAATACTCGAGTCCTATCTCC 178
Query 512 AAGAACTCGTTACTCGGCTTATATTGTGTTCAAGGGAGTGGATAAATGTTATGGCTTTCA 571
|| ||||| |||||||||||| |||||||||||| ||| |||| |||||||||||||| |
Sbjct 179 AAAAACTCATTACTCGGCTTACATTGTGTTCAAGAGAGCGGATCAATGTTATGGCTTTAA 238
Query 572 GAATGTGGCCATAGAAGCTGCGGTAGGAGTGGTGGGAC-AGGAGCCTTCTAGAAGATTA- 629
| ||| |||||||||||||| || ||| ||||||||| || || ||||||||||| ||
Sbjct 239 GGATGAGGCCATAGAAGCTGTAGTTGGAATGGTGGGACAAGAAG-CTTCTAGAAGA-TAT 296
Query 630 ATATGCTTTAG-TGAAGCTATA-A----G-G------AGGGGA-AG-GAGG-A--A---- 667
||||||||| | ||| |||||| | | | |||||| || |||| | |
Sbjct 297 ATATGCTTT-GATGAGGCTATAGATGGGGAGTTTCAAAGGGGAGAGAGAGGAATGAGGCC 355
Query 668 CGTTGTGAAACCTAAGCAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAGTTCTT 727
| | |||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 356 CCTAGTGAAACCCGAGGAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAATTCTT 415
Query 728 CAATGATGGAGGAATAATGGATAATGATGAAATTGAGATGAGTGCTTTAGAGACTAAGCA 787
|| ||| |||||||||||| | | ||| |||||||||||| ||||||||||||||||||
Sbjct 416 CATTGAAGGAGGAATAATGAACAGTGAGGAAATTGAGATGGGTGCTTTAGAGACTAAGCG 475
Query 788 GCTCAATCGGAAGTGTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCTAAAATCC 846
||||||| |||||| ||||||||| || |||||||||| |||||| ||||| |||||||
Sbjct 476 GCTCAATGGGAAGTATGGCTTGATTATCCAAGGAATTGGAATCCGTCCTGCGAAAATCC 534
> Ahg935977 jgi|Araly1|935977|scaffold_500168.1
Length=881
Score = 427 bits (231), Expect = 8e-119
Identities = 332/382 (87%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 56 ATCGGAGTCGTCTCCGTTCGATTCATTTCCGGAAGATTGCATCTCCTACATAATCTCTTT 115
|||||| || || ||||| ||||| || || ||||| |||||| || |||||||||||||
Sbjct 75 ATCGGATTCTTCGCCGTTTGATTCCTTGCCCGAAGAATGCATCCCCAACATAATCTCTTT 134
Query 116 TACAAATCCACGCGATGCGTGCGTCGCTGCTACGGTTTCGAAAACGTTTGAATCGACGGT 175
|||| ||||||||| ||||||||||||||| || |||||||||| ||||||||| |||
Sbjct 135 CACAAGTCCACGCGACGCGTGCGTCGCTGCTTCGATTTCGAAAACCTTTGAATCGGCGGC 194
Query 176 GAAGTCAGATATT-ATATGGGAGAAGTTTCTTCCGGCGGATTATGAATCTCTGATTCCTC 234
|| |||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 195 CAAATCAGAT-TTCGTATGGGAGAAGTTTATTCCGCCGGATTATGAATCTCTGGTTCCTC 253
Query 235 CATCGCGAGTTTTCTCATCGAAGAAGGAGCTCTATTTCTCTCTCTGTAACGATCCTGTTC 294
|||||| | ||||||||||||||||||||||||||| |||| |||||||||||| |||
Sbjct 254 GATCGCGGGAATTCTCATCGAAGAAGGAGCTCTATTTCGCTCTATGTAACGATCCTCTTC 313
Query 295 TATTCGACGATGACAAAAAGAGCGTATGGTTAGAGAAAGCGAGTGGGAAGAGGTGTCTGA 354
|| |||| |||| |||||||||| | |||||||||||||||||||||||||| ||| | |
Sbjct 314 TAATCGATGATGGCAAAAAGAGCATCTGGTTAGAGAAAGCGAGTGGGAAGAGATGTATCA 373
Query 355 TGTTATCTGCGATGAACCTCTCAATCATATGGGGAGATAATCCTCAGTATTGGCAATGGA 414
||||||| || ||||| |||||||| |||||||||| ||| ||| |||||||||||||
Sbjct 374 TGTTATCAGCTATGAATCTCTCAATGGTATGGGGAGAGGATCGTCACTATTGGCAATGGA 433
Query 415 TTCCAATTCCTGAATCTAGGTT 436
||||||||||||||||||||||
Sbjct 434 TTCCAATTCCTGAATCTAGGTT 455
Score = 346 bits (187), Expect = 2e-94
Identities = 356/431 (83%), Gaps = 37/431 (9%)
Strand=Plus/Plus
Query 469 GGTTCGAGATTCGTGGCAGAACGAATACTCGTGTATTATCTCCAAGAACTCGTTACTCGG 528
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 452 GGTTAGAGATTCGTGGCAGAACGAATACTAGTGTCCTATCTCCAAGAACTCGTTACTCGG 511
Query 529 CT-TATATTGTGTTCAAG-GGAGT-GGATAAATGTTATGGCTTT-CAGAATGTGGCCA-T 583
| || ||||||||| | ||| | |||| |||||||||||||| | | |||||| || |
Sbjct 512 -TCTACATTGTGTTC--GTGGAATCGGATCAATGTTATGGCTTTGC-GGATGTGG-CAGT 566
Query 584 AGAAGCTGCGGTAGGAGTGGTGGGACAGGAGCCTTCTAGAAGATTAATATG-CTT--T-- 638
|||||||| || ||| |||||||||| || |||||||||||||| ||||| || |
Sbjct 567 AGAAGCTGAAGTTGGAATGGTGGGACATGAACCTTCTAGAAGATTCATATGTTTTGATAA 626
Query 639 AG---TGAA---GC----TAT-A--AG-GA-GG-GGAAGGAGGAACGTTGTGAAACCTAA 682
|| |||| || ||| | || || || ||||||||| ||||||||||||| ||
Sbjct 627 AGCTATGAATGGGCAGTTTATAACGAGAGACGGTGGAAGGAGGGACGTTGTGAAACCAAA 686
Query 683 GCAGAGAGAAGATGGGTGGATGGAGATTGAGCTTGGGGAGTTCTTCAATGATGGAGGAAT 742
| ||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||| |
Sbjct 687 GGAGAGAGAAGATGGGTGGATGGAGATAGAGCTTGGGGAATTCTCCAATGAAGGAGGATT 746
Query 743 AATGGATAATGATGAAATTGAGATGAGTGCTTTAGAGACTAAGCAG-CTCAATCGGAAGT 801
||| ||| ||||||||||||||||||||| ||||||| ||||| | ||| | ||| |
Sbjct 747 GATGAATAGTGATGAAATTGAGATGAGTGCCTTAGAGAATAAGC-GTATCACTTGGAGGG 805
Query 802 GTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCTAAAA-TCCTCTGAAGTAAT--- 857
||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||
Sbjct 806 GTGGCTTGATCATTCAAGGAATTGAAATCCGACCTGCGAAAAGTCCTTTAAAGTAATAAT 865
Query 858 GCGGCGGAACA 868
|||||| ||||
Sbjct 866 GCGGCGAAACA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5