BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02370.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484153 jgi|Araly1|484153|fgenesh2_kg.5__145__AT2G02370.1 1792 0.0
> Ahg484153 jgi|Araly1|484153|fgenesh2_kg.5__145__AT2G02370.1
Length=1346
Score = 1792 bits (970), Expect = 0.0
Identities = 1239/1361 (91%), Gaps = 49/1361 (4%)
Strand=Plus/Plus
Query 76 AAACAACACTAAACCTG-AAA--CAAACGTAAATCCGCCGCAACAACCCAGTTTTTTCCG 132
|||| |||||||||||| ||| || |||||||||||||||||||||||| |||||||||
Sbjct 18 AAACGACACTAAACCTGAAAAGGCAGACGTAAATCCGCCGCAACAACCCATTTTTTTCCG 77
Query 133 ACGGCGT-ACAAGCTTCCTCCGCCGTAACGCCGTCGTTTAATACCAAGAAGCTTGATTAG 191
|||||| | || |||| ||||||||||||||| |||| | ||| |||||||||||||
Sbjct 78 TCGGCGTAAGAA-TTTCCGCCGCCGTAACGCCGTTGTTTTCT-CCACGAAGCTTGATTAG 135
Query 192 GTTTCCGTAGTGTGTGAttt-ttttAAGGTTCTGAACACTGATGTCAAACCCATTGAAAG 250
| | ||||||||||||| |||| ||||| |||||||||||||||||| |||||||||
Sbjct 136 G--T---TAGTGTGTGATTTCTTTT-AGGTTTTGAACACTGATGTCAAACACATTGAAAG 189
Query 251 AGTCAAGAGAGGATATTGCAAATTCTACTCCTCACATGA-GG--GATAATGAGTATGTTC 307
||||||||||||||| | || ||||| | ||| |||| || ||||||||||||||||
Sbjct 190 AGTCAAGAGAGGATAATACAGATTCTGTTGGTCAGATGAGGGAAGATAATGAGTATGTTC 249
Query 308 GGCTAGTTGTGGCTCATGAAGCCTCCCCAGCTGAAACCGTGTTGTCTCTATCGCAATCAG 367
|||| ||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 250 GGCTTGTTGTTGCTCATGAAGCCTCCGCTGCTGAAACTGTGTTGTCTCTATCGCAATCAG 309
Query 368 AGGTGCAGAGTAAGAAATTTATGTGGTGGTTAAAAGC-TTTGGGAATATGTGCAGTTGCT 426
||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 310 AGGTGCAGAGTAAGAAATTTATGTGGTGGTTGAAAGCTTTTGGG-ATATTTGCAGTTGCT 368
Query 427 CTCTTGCTTACGCTTGTTTTCGGAAAATGGGGAGTTCCGTTTGTGTTTCAAAAGGTTCTT 486
|||||||||||||||||||| || |||||||||||||||||||| || |||||||||||
Sbjct 369 CTCTTGCTTACGCTTGTTTTTGGCAAATGGGGAGTTCCGTTTGTATTCCAAAAGGTTCTC 428
Query 487 ATTCCAATTTTGCAATGGGAAGCAACTGCGTTTGGCCGTCCTATGCTCGCGATTGTCCTT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATTCCAATTTTGCAATGGGAAGCAACTGCGTTTGGCCGTCCTATGCTCGCGATTGTCCTT 488
Query 547 GTTGTTTCCTTGGCTTTGTTTCCTGTGTTCTTGATACCTTCTGGTCCTTCCATGTGGTTA 606
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GTGGTTTCCTTGGCTTTGTTTCCTGTGTTCTTGATACCTTCTGGTCCTTCCATGTGGTTA 548
Query 607 GCTGGGATGATTTTTGGTTATGGTCTCGGTTTTGTTATTATCATGGTTGGAACCACCATT 666
||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 549 GCTGGGATGATTTTTGGTTATGGCCTCGGTTTTGTTATAATCATGGTTGGTACCACCATC 608
Query 667 GGCATGGTTCTCCCTTACTTAATCGGGCTTATGTTCCGTGATCGCCTCCATCAATGGTTA 726
|||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 609 GGCATGGTCCTTCCTTACCTAATCGGGCTAATGTTCCGTGATCGCCTCCATCAATGGTTA 668
Query 727 AAAAGATGGCCTCGTCAAGCTGCTGTTCTAAGACTAGCTGCAGAAGGAAGCTGGTTCCAT 786
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 669 AAAAGGTGGCCTCGTCAAGCTGCTGTTCTTAGACTAGCTGCAGAAGGAAGCTGGTTCCAT 728
Query 787 CAATTCAGAGTCGTGGCAATCTTTCGGGTTTCCCCATTTCCTTACACGATTTTTAACTAC 846
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 729 CAATTTAGAGTCGTGGCAATCTTTCGGATTTCCCCATTTCCTTACACGATTTTTAACTAC 788
Query 847 GCAATCGTCGTGACAAGCATGAGATTCTGGCCTTACTTCTTCGGATCCATAGCAGGAATG 906
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 789 GCAATTGTTGTGACAAGCATGAGATTCTGGCCTTACTTCTTCGGATCCATTGCAGGAATG 848
Query 907 ATACCAGAAGCTTTCATCTACATTTACAGCGGTCGGTTAATCAGAACATTCGCAGATGTG 966
|||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct 849 ATACCAGAAGCTTTCATCTACATTTATAGTGGTCGGTTGATCAGAACATTTGCAGATGTG 908
Query 967 CAATACGGACATCAACGTTTGACAACAGTGGAGATTGTGTACAATGTAATCTCCTT-AGT 1025
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 909 CAATACGGACATCAACGTTTGACAACAGTGGAGATTGTGTACAATATAATCTCCTTGA-T 967
Query 1026 CATTGCGGTTGTGACCACTGTTGCTTTCACTGTGTACGCGAAAAGAGCTTTGAGAGAGCT 1085
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 968 CATTGCGGTTGTGACCACTGTTGCTTTCACTGTGTATGCGAAAAGAGCTTTGAGAGAGCT 1027
Query 1086 TCAAAACGCAGAAGCTAATGAAGATGAAGAAGTTCAAGTAAGAAAAGTG--A-GATTCGA 1142
||||||||||||||||||||||||||||||||||| ||||||||| | | |||| ||
Sbjct 1028 TCAAAACGCAGAAGCTAATGAAGATGAAGAAGTTCCGGTAAGAAAACAGGCAAGATTTGA 1087
Query 1143 GATGAAGAACGTAGTTCAGCACGAAGAAGATAATCATCAGCGTTTGCCTTAG-CCGAAAG 1201
||||||||| || ||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 1088 GATGAAGAATGTTGTTCAACACGAAGAAGATAATCATCAGCGTATGCCTTAATCCGAAAG 1147
Query 1202 TTGACACAAAGCTAAGATAGGTTT-GTATAAAGCTTTGAACGTTGACATGTTCTTCAGCA 1260
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1148 TTGACACAAAGCTATGGTAGGTTTTGTATAAAGCTTTGAACGTTGACATGTTCTTCAGCA 1207
Query 1261 GGATTTAG-AGTAAATAACAAAAGGGGTaaaaaaaGTCTGATATAGTAGGAAGACTAAGA 1319
||| | || |||||||||||||||||||||||||| | | | | ||| |
Sbjct 1208 GGAGT-AGTAGTAAATAACAAAAGGGGTAAAAAAA-----A-A--G-A------CTA-G- 1249
Query 1320 CTAGTCAAGATTGGATTTATATTAGTGTGACTGATTCCAATTATTGAAACAAATAAAAGA 1379
| |||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
Sbjct 1250 -T---CAAGATTGGATTTAAATTAGTGTGACTGATTCCAAGTATTGAAATAAATAAAACA 1305
Query 1380 AGCATTTAGGCTA-AAATAGTGTATGAAAATATGGATGCTC 1419
||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1306 AGCATTTAGGCTATAAATAGTGTATGAAAATCTGGATGCTC 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5