BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02380.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935980 jgi|Araly1|935980|scaffold_500171.1 1042 0.0
Ahg896178 jgi|Araly1|896178|Al_scaffold_0005_144 719 0.0
> Ahg935980 jgi|Araly1|935980|scaffold_500171.1
Length=688
Score = 1042 bits (564), Expect = 0.0
Identities = 636/671 (95%), Gaps = 3/671 (0%)
Strand=Plus/Plus
Query 60 TCA-GGCGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCATGTGCTCATCGCGTCCGTA 118
||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 19 TCATGGGGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGCGTCCGTA 78
Query 119 TCGCCCTCACTTTAAAAGGGCTTGATTATGAATATATACCGGTTAATTTGCTCAAAGGGG 178
||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||
Sbjct 79 TCGCCCTCACTTTAAAAGGACTTGATTATGAATATATACCAGTGATTTTGCTCAAAGGGG 138
Query 179 ATCAATCCGATTCAGATTTCAAGAAGATCAATCCAATGGGCACTGTACCAGCGCTTGTTG 238
|||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 139 ATCAATTCGATCCAGATTTCAAGCAGATCAATCCAATGGGCACTGTACCAGCGCTTGTTG 198
Query 239 ATGGTGATGTTGTGATTAATGACTCTTTCGCAATAATAATGTACCTGGATGATAAGTATC 298
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 199 ATGGTGATGTTGTGATTAATGATTCTTTCGCAATAATAATGTATCTGGATGATAAGTATC 258
Query 299 CGGAGCCACCGCTGTTACCAAGTGAC-TACCATAAACGGGCGGTAAATTACCAGGCGACG 357
| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 259 CTGAGCCACCGCTGTTACCAAGTGACCT-CCATAAACGAGCGGTAAATTACCAGGCGACG 317
Query 358 AGTATTGTCATGTCTGGTATACAGCCTCATCAAAATATGGCTCTTTTTAGGTATCTCGAG 417
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 318 AGTATTGTCATGTGTGGTATACAACCTCATCAAAATATGGCACTTTTTAGGTATCTCGAG 377
Query 418 GACAAGATAAATGCTGAGGAGAAAACTGCTTGGATTACTAATGCTATCACAAAAGGATTC 477
|| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 378 GAAAAGATAAATGCCGAGGAGAAAACTGCTTGGATTACCAACGCTATCACAAAAGGATTC 437
Query 478 ACAGCTCTCGAGAAACTGTTGGTGAGTTGCGCTGGAAAATACGCGACTGGTGATGAAGTT 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 ACAGCTCTCGAGAATCTGTTGGTGAGTTGCGCTGGAAAATACGCGACTGGTGATGAAGTT 497
Query 538 TACTTGGCTGATCTTTTCCTAGCACCACAGATCCACGCAGCATTCAACAGATTCCATATT 597
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 498 TACTTGGCCGATCTTTTTCTAGCACCACAGATCCACGCAGCATTCAACAGATTCCAGATT 557
Query 598 AACATGGAACCATTCCCGACTCTTGCAAGGTTTTACGAGTCATACAACGAACTGCCTGCA 657
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 558 AACATGGAACCATACCCGACTCTTGCAAAGTTTCACGAGTCATACAACGAACTGCCTGCA 617
Query 658 TTTCAAAATGCAGTCCCGGAGAAGCAACCAGATACTCCTTCCACCATCTGATTCTGTGAA 717
||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| |||
Sbjct 618 TTTCAAAATGCAGTCCCAGAGAACCAGCCAGATACTCCTTCGACCATCTGATTCTGCGAA 677
Query 718 CCGTAAGCTTC 728
|||||||||||
Sbjct 678 CCGTAAGCTTC 688
> Ahg896178 jgi|Araly1|896178|Al_scaffold_0005_144
Length=684
Score = 719 bits (389), Expect = 0.0
Identities = 579/667 (87%), Gaps = 27/667 (4%)
Strand=Plus/Plus
Query 66 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCATGTGCTCATCGCGTCCGTATCGCCCT 125
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 21 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGTGTCCGCATCGCCCT 80
Query 126 CACTTTAAAAGGGCTTGATTATGAATATATACCGGTTAATTTGCTCAAAGGG-GATCAAT 184
| |||||||||| ||||||||||| |||||||| || |||||| |||| ||| |||||||
Sbjct 81 CGCTTTAAAAGGTCTTGATTATGAGTATATACCAGTGAATTTGATCAA-GGGTGATCAAT 139
Query 185 -C---C--G---AT--T------C---A-GATTTCAAGAAGATCAATCCAATGGGCACTG 223
| | | || | | | ||||||||| |||||||||||||||| ||||
Sbjct 140 TCGATCCAGTTTATCGTTTTGATCTTCAAGATTTCAAGCAGATCAATCCAATGGGTACTG 199
Query 224 TACCAGCGCTTGTTGATGGTGATGTTGTGATTAATGACTCTTTCGCAATAATAATGTACC 283
||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||||| |
Sbjct 200 TACCAGCGCTTGTTGATGGCGATGTCGTGATTAATGATTCTTTTGCGATAATAATGTATC 259
Query 284 TGGATGATAAGTATCCGGAGCCACCGCTGTTACCAAGTGAC-TACCATAAACGGGCGGTA 342
||||||| |||||||| |||||||| |||||||| ||||| | |||||||||||| ||
Sbjct 260 TGGATGAGAAGTATCCTGAGCCACCTCTGTTACCTCGTGACAT-CCATAAACGGGCTGTG 318
Query 343 AATTACCAGGCGACGAGTATTGTCATGTCTGGTATACAGCCTCATCAAAATATGGCTCTT 402
||||||||||||| |||||||||| ||||||| ||||| |||||||||||| ||||| ||
Sbjct 319 AATTACCAGGCGATGAGTATTGTCTTGTCTGGCATACAACCTCATCAAAATCTGGCTGTT 378
Query 403 TTTAGGTATCTCGAGGACAAGATAAATGCTGAGGAGAAAACTGCTTGGATTACTAATGCT 462
|||||||| ||||||| ||||||||||| |||||||| ||||||||| ||| |||||||
Sbjct 379 ATTAGGTATATCGAGGAAAAGATAAATGCGGAGGAGAAGACTGCTTGGGTTAATAATGCT 438
Query 463 ATCACAAAAGGATTCACAGCTCTCGAGAAACTGTTGGTGAGTTGCGCTGGAAAATACGCG 522
|||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| | ||
Sbjct 439 ATCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAATTGCGCTGGGAAACATGCA 498
Query 523 ACTGGTGATGAAGTTTACTTGGCTGATCT-TTTCCTAGCACCACAGATCCACGCAGCATT 581
|||||||||||| ||||| |||||||||| |||| |||||||||||||||||| |||| |
Sbjct 499 ACTGGTGATGAAATTTACCTGGCTGATCTCTTTC-TAGCACCACAGATCCACGGAGCAAT 557
Query 582 CAACAGATTCCATATTAACATGGAACCATTCCCGACTCTTGCAAGGTTTTACGAGTCATA 641
|||||||||||| |||||||||||||||| ||| |||||||||| | ||| || |||||
Sbjct 558 CAACAGATTCCAGATTAACATGGAACCATACCCAACTCTTGCAAAATGTTATGAATCATA 617
Query 642 CAACGAACTGCCTGCATTTCAAAATGCAGTCCCGGAGAAGCAACCAGATACTCCTTCCAC 701
||||||||||||| | |||||||||||| ||||||| ||||| |||||| ||||||||||
Sbjct 618 CAACGAACTGCCTTCGTTTCAAAATGCACTCCCGGAAAAGCAGCCAGATGCTCCTTCCAC 677
Query 702 CATCTGA 708
|||||||
Sbjct 678 CATCTGA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5