BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02390.3
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896178 jgi|Araly1|896178|Al_scaffold_0005_144 1099 0.0
Ahg935980 jgi|Araly1|935980|scaffold_500171.1 712 0.0
> Ahg896178 jgi|Araly1|896178|Al_scaffold_0005_144
Length=684
Score = 1099 bits (595), Expect = 0.0
Identities = 657/687 (96%), Gaps = 3/687 (0%)
Strand=Plus/Plus
Query 117 ATGGCGAATTCCGGCGAAGAGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCT 176
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAATTCCGGCGCTGAGAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCT 60
Query 177 CATCGTGTCCGTATCGCCCTCGCTTTGAAAGGGCTTGATTATGAGTATATACCAGTGAAT 236
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 61 CATCGTGTCCGCATCGCCCTCGCTTTAAAAGGTCTTGATTATGAGTATATACCAGTGAAT 120
Query 237 TTGCTCAAGGGTGATCAATTCGATTCAGTTTATCGTTTTGATCTTCAAGATTTCAAGAAG 296
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 121 TTGATCAAGGGTGATCAATTCGATCCAGTTTATCGTTTTGATCTTCAAGATTTCAAGCAG 180
Query 297 ATCAATCCAATGGGAACTGTACCAGCTCTGGTGGATGGAGATGTTGTGATTAATGATTCT 356
|||||||||||||| ||||||||||| || || ||||| ||||| |||||||||||||||
Sbjct 181 ATCAATCCAATGGGTACTGTACCAGCGCTTGTTGATGGCGATGTCGTGATTAATGATTCT 240
Query 357 TTTGCGATAATAATGTATCTGGATGAGAAGTACCCTGAGCCACCTTTGTTACCTCGTGAC 416
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 241 TTTGCGATAATAATGTATCTGGATGAGAAGTATCCTGAGCCACCTCTGTTACCTCGTGAC 300
Query 417 CTCCATAAACGAGCTGTGAATTACCAGGCAATGAGTATTGTCTTGTCTGGCATACAGCCT 476
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 301 ATCCATAAACGGGCTGTGAATTACCAGGCGATGAGTATTGTCTTGTCTGGCATACAACCT 360
Query 477 CATCAAAATCTGGCTGTTATTAGGTATATCGAGGAAAAGATAAATGTGGAGGAGAAGACT 536
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 CATCAAAATCTGGCTGTTATTAGGTATATCGAGGAAAAGATAAATGCGGAGGAGAAGACT 420
Query 537 GCCTGGGTTAATAATGCTATCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAAT 596
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTGGGTTAATAATGCTATCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAAT 480
Query 597 TGCGCTGGGAAACATGCGACTGGTGATGAAATTTACCTGGCTGATCTCTTTCTAGCACCA 656
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCGCTGGGAAACATGCAACTGGTGATGAAATTTACCTGGCTGATCTCTTTCTAGCACCA 540
Query 657 CAGATCCACGGAGCAATCAACAGATTCCAGATTAACATGGAACCGTACCCAACTCTTGCA 716
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 CAGATCCACGGAGCAATCAACAGATTCCAGATTAACATGGAACCATACCCAACTCTTGCA 600
Query 717 AAATGTTACGAATCATACAACGAACTGCCTGCGTTTCAAAATGCACTACCGGAAAAGCAG 776
|||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 601 AAATGTTATGAATCATACAACGAACTGCCTTCGTTTCAAAATGCACTCCCGGAAAAGCAG 660
Query 777 CCAGATGCTCCTTCTTCCACCATCTGA 803
|||||||||||||| | |||||||||
Sbjct 661 CCAGATGCTCCTTC--C-ACCATCTGA 684
> Ahg935980 jgi|Araly1|935980|scaffold_500171.1
Length=688
Score = 712 bits (385), Expect = 0.0
Identities = 592/688 (86%), Gaps = 29/688 (4%)
Strand=Plus/Plus
Query 137 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGTGTCCGTATCGCCCT 196
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 26 GAAGTTGAAGCTCTACTCTTACTGGAGAAGCTCGTGTGCTCATCGCGTCCGTATCGCCCT 85
Query 197 CGCTTTGAAAGGGCTTGATTATGAGTATATACCAGTGAATTTGCTC-AAGGGTGATCAAT 255
| |||| ||||| ||||||||||| ||||||||||||| ||||||| ||||| | |
Sbjct 86 CACTTTAAAAGGACTTGATTATGAATATATACCAGTGATTTTGCTCAAAGGG-G----A- 139
Query 256 TCGATTCAGTTTATCGTTTTGATCTTCAAGATTTCAAGAAGATCAATCCAATGGGAACTG 315
|| | | | || |||| | |||||||||| |||||||||||||||| ||||
Sbjct 140 TC-A---A---T-TC-----GATC--C-AGATTTCAAGCAGATCAATCCAATGGGCACTG 183
Query 316 TACCAGCTCTGGTGGATGGAGATGTTGTGATTAATGATTCTTTTGCGATAATAATGTATC 375
||||||| || || ||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 184 TACCAGCGCTTGTTGATGGTGATGTTGTGATTAATGATTCTTTCGCAATAATAATGTATC 243
Query 376 TGGATGAGAAGTACCCTGAGCCACCTTTGTTACCTCGTGACCTCCATAAACGAGCTGTGA 435
||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||| || |
Sbjct 244 TGGATGATAAGTATCCTGAGCCACCGCTGTTACCAAGTGACCTCCATAAACGAGCGGTAA 303
Query 436 ATTACCAGGCAATGAGTATTGTCTTGTCTGGCATACAGCCTCATCAAAATCTGGCTGTTA 495
|||||||||| | |||||||||| ||| ||| ||||| |||||||||||| |||| ||
Sbjct 304 ATTACCAGGCGACGAGTATTGTCATGTGTGGTATACAACCTCATCAAAATATGGCACTTT 363
Query 496 TTAGGTATATCGAGGAAAAGATAAATGTGGAGGAGAAGACTGCCTGGGTTAATAATGCTA 555
|||||||| |||||||||||||||||| |||||||| ||||| ||| ||| || ||||
Sbjct 364 TTAGGTATCTCGAGGAAAAGATAAATGCCGAGGAGAAAACTGCTTGGATTACCAACGCTA 423
Query 556 TCACAAAAGGATTTACAGCTCTCGAGAAACTGTTGGTGAATTGCGCTGGGAAACATGCGA 615
||||||||||||| |||||||||||||| |||||||||| ||||||||| ||| | ||||
Sbjct 424 TCACAAAAGGATTCACAGCTCTCGAGAATCTGTTGGTGAGTTGCGCTGGAAAATACGCGA 483
Query 616 CTGGTGATGAAATTTACCTGGCTGATCTCTTTCTAGCACCACAGATCCACGGAGCAATCA 675
||||||||||| ||||| |||| ||||| |||||||||||||||||||||| |||| |||
Sbjct 484 CTGGTGATGAAGTTTACTTGGCCGATCTTTTTCTAGCACCACAGATCCACGCAGCATTCA 543
Query 676 ACAGATTCCAGATTAACATGGAACCGTACCCAACTCTTGCAAAATGTT-ACGAATCATAC 734
||||||||||||||||||||||||| ||||| ||||||||||| | || |||| ||||||
Sbjct 544 ACAGATTCCAGATTAACATGGAACCATACCCGACTCTTGCAAAGT-TTCACGAGTCATAC 602
Query 735 AACGAACTGCCTGCGTTTCAAAATGCACTACCGGAAAAGCAGCCAGATGCTCCTTCTTCC 794
|||||||||||||| |||||||||||| | || || || ||||||||| |||||||
Sbjct 603 AACGAACTGCCTGCATTTCAAAATGCAGTCCCAGAGAACCAGCCAGATACTCCTTCG--- 659
Query 795 ACCATCTGATTCTGTGAACCCATAAGCT 822
|||||||||||||| ||||| ||||||
Sbjct 660 ACCATCTGATTCTGCGAACCG-TAAGCT 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5