BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02400.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484158 jgi|Araly1|484158|fgenesh2_kg.5__150__AT2G02400.1 1698 0.0
> Ahg484158 jgi|Araly1|484158|fgenesh2_kg.5__150__AT2G02400.1
Length=1126
Score = 1698 bits (919), Expect = 0.0
Identities = 1034/1089 (95%), Gaps = 9/1089 (1%)
Strand=Plus/Plus
Query 69 TAAATTGCGATAGAGAGAGAGAACaaaaaaaTTCTCAGTGAGCGCTTA-TTGATCAACAA 127
||||||||||| |||||| | ||| ||||||||||||||| |||| |||||||||||
Sbjct 43 TAAATTGCGAT----AGAGAG-A-AAATAAATTCTCAGTGAGCTCTTATTTGATCAACAA 96
Query 128 TGGCGAAAGAGACAGTGTGTGTAACCGGAGCTAATGGTTTCATCGGATCTTGGATAATCC 187
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 97 TGGCGAAAGAGACAGTGTGTGTAACCGGAGCTAATGGTTTCATTGGATCTTGGATAATCC 156
Query 188 GAACGTTAATTGAGAAAGGATATACTAAAATCCACGCTTCGATTTACCCAGGATCCGACC 247
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 157 GAACGTTAATTGAGAAAGGTTATACAAAAATCCACGCTTCGATTTACCCAGGATCCGACC 216
Query 248 CGACTCATCTTCTGCAACTACCCGGATCCGATTCTAAGATCAAGATCTTTGAAGCGGATC 307
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 217 CGACTCATCTTCTGAAACTACCCGGATCTGATTCGAAGATCAAGATCTTTGAAGCGGATC 276
Query 308 TCTTAGACTCTGATGCAATCTCCAGAGCTATTGATGGATGTGCGGGAGTGTTCCACGTGG 367
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TCTTAGACTCCGATGCAATCTCCAGAGCTATTGATGGATGTGCGGGAGTGTTCCACGTGG 336
Query 368 CGTCACCTTGTACGTTGGATCCACCGGT-AGATCCAGAGAAGGAGCTGGTCGAACCGGCG 426
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 337 CGTCACCTTGTACGTTGGATCCACCGGTTA-ATCCAGAGAAGGAACTGGTCGAACCGGCG 395
Query 427 GTTAAGGGAACGATCAATGTGTTGGAAGCTGCTAAGAGGTTTAATGTGAGACGCGTGGTG 486
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 396 GTTAAAGGAACGATCAATGTGTTGGAAGCTGCTAAAAGGTTTAATGTGAGACGCGTGGTG 455
Query 487 ATCACGTCATCTATCTCCGCATTGGTTCCTAACCCTAATTGGCCGGAAAAAGTTCCCGTC 546
|||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 456 ATCACGTCATCTATCTCCGCCTTGGTTCCTAACCCTAATTGGCCGGAAAGAGTCCCCGTC 515
Query 547 GATGAGTCGTCGTGGTCCGATCTTGATTTTTGCAAGTCGAGGCAGAAATGGTATCCAATT 606
||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 516 GATGAATCGTCGTGGACCGATCTCGATTTTTGCAAGTCGATGCAGAAATGGTATCCAATT 575
Query 607 TCGAAGACATTAGCTGAGAAAGCAGCTTGGGAATTTTCGGAGAAGCATGGAACCAACATT 666
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 576 TCGAAGACATTAGCTGAGAAAGCAGCTTGGGATTTTTCGGAGAAGCATGGAACCAACATT 635
Query 667 GTGACGATTCATCCATCAACATGTCTCGGACCGCTTCTGCAACCGAACCTAAACGCAAGC 726
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GTGACGATCCATCCATCAACATGTCTCGGACCGCTTCTGCAACCGAACCTAAACGCAAGC 695
Query 727 TGTGCTGTTCTGCTACAGCTTTTACAAGGCTCGACCGAGACGCAAGAGCATCACTGGCTC 786
||||| ||| |||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 696 TGTGCCGTTTTGCTACAGCTCTTACAAGGCTCGACAGACACGCAAGAGCATCACTGGCTT 755
Query 787 GGTGTGGTTCACGTGAAAGATGTGGCTAAAGGTCATGTGATGCTATTCGAAACACCTGAC 846
|||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 756 GGTGTGGTACATGTGAGGGATGTGGCTAAAGGTCATGTGATGTTATTCGAAACACCTGAA 815
Query 847 GCTTCTGGACGGTTTTTATGCACTAATGGGATTTATCAGTTCAGTGAGTTTGCTGCTCTT 906
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GCTTCTGGTCGGTTTCTATGCACTAATGGGATTTATCAGTTCAGTGAGTTTGCTGCTCTT 875
Query 907 GTGTCTAAGCTCTTCCCTGAGTTTGCTGTTCACAAGTTTGATAAAGAGACTCAACCTGGG 966
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 876 GTGTCCAAGCTCTTCCCTGAGTTTGCTGTTCACAGGTTTGATAAAGAGACTCAACCTGGG 935
Query 967 CTTACGTCGTGTAATGATGCGGCTAAGCGATTGATTGAGCTCGGGCTGGTTTTTACTGCG 1026
||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 936 CTTACGTCGTGTATTGATGCGGCTAAGAGATTGATTGAGCTCGGGCTGGTTTTCACTGCT 995
Query 1027 GTTGAAGATGCGGTTAAGGAGACGGTCCAGAGTCTTAGAGACAAAGGCTTCCTCTGAGAA 1086
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 996 GTTGAAGATGCTGTTAAGGAGACGGTCCAGAGTCTTAGAGACAAAGGCTTCCTCTGAGCA 1055
Query 1087 TGTATGATATATCTTTGCAAATTTCAAAATCTGTGACCTTTATTGTATGATACAAGTAGA 1146
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1056 TGTATAATATATCTTTGCAAATTTCAAACTCTGTGACCTTTATTGTATGATACAAGTAGA 1115
Query 1147 GAAACTAAG 1155
| |||||||
Sbjct 1116 GGAACTAAG 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5