BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G02450.2
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484160 jgi|Araly1|484160|fgenesh2_kg.5__152__AT2G02450.1 1653 0.0
> Ahg484160 jgi|Araly1|484160|fgenesh2_kg.5__152__AT2G02450.1
Length=1290
Score = 1653 bits (895), Expect = 0.0
Identities = 960/991 (97%), Gaps = 6/991 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATTGTATCCTCCACAACAAGCATCATTCCCATGAGTAACCAAGTCAACAATAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATTGTATCCTCCACAACAAGCATCATTCCCATGAGTAACCAAGTCAACAATAAC 60
Query 61 GAAAAAGGTATAGAAGACAATGATCATAGAGGCGGCCAAGAGAGTCATGTCCAAAATGAA 120
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAAAAAGGTATAGAAGACGATGATCACAGAGGCGGCCAAGAGAGTCATGTCCAAAATGAT 120
Query 121 GATGAAGCTGATGATCATGATCATGACATGGTCATGCCCGGATTTAGATTCCATCCTACC 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GATGAAGCAGATGATCATGATCATGACATGGTCATGCCCGGATTCAGATTCCATCCTACC 180
Query 181 GAAGAAGAACTCATAGAGTTTTACCTTCGCCGAAAAGTTGAAGGCAAACGCTTTAATGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GAAGAAGAACTCATAGAGTTTTACCTTCGCCGAAAAGTTGAAGGCAAACGCTTCAATGTA 240
Query 241 GAACTCATCACTTTCCTCGATCTTTATCGCTATGATCCTTGGGAACTTCCTGCTATGGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACTCATCACTTTCCTCGATCTTTATCGCTATGATCCTTGGGAACTTCCTGCTATGGCG 300
Query 301 GCGATAGGAGAGAAAGAGTGGTACTTCTATGTGCCAAGAGATCGGAAATATAGAAATGGA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTATAGGAGAGAAAGAGTGGTACTTCTATGTGCCAAGAGATCGGAAATATAGAAATGGA 360
Query 361 GATAGACCGAACCGAGTAACGACTTCAGGATATTGGAAAGCCACCGGAGCTGATAGGATG 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 GATAGACCAAACCGAGTAACGACTTCAGGATATTGGAAAGCCACCGGAGCTGATCGGATG 420
Query 421 ATCAGATCGGAGACTTCTCGGCCTATCGGATTAAAGAAAACCCTAGTTTTCTACTCTGGT 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 ATCAGATCGGAGACATCTCGGCCTATCGGATTAAAGAAAACCCTAGTTTTCTACTCCGGT 480
Query 481 AAAGCCCCTAAAGGCACTCGTACTAGTTGGATCATGAACGAGTATCGTCTTCCGCACCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AAAGCCCCTAAAGGCACTCGTACTAGTTGGATCATGAACGAGTATCGTCTTCCTCACCAT 540
Query 541 GAAACCGAGAAGTACCAAAAGGCTGAAATATCATTGTGCCGAGTGTACAAAAGGCCAGGA 600
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GAAACCGAGAAATACCAAAAGGCTGAAATATCATTATGCCGAGTGTACAAAAGGCCAGGA 600
Query 601 GTAGAAGATCATCCATCGGTACCACGTTCTCTCTCCACAAGACATCATAACCATAACTCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTAGAAGATCATCCATCGGTACCACGTTCTCTCTCCACAAGACATCATAACCATAACTCA 660
Query 661 TCGACATCATCCCGTTTAGCCTTAAGacaacaacaacaccattcatcctcctctaatcat 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCGTCATCATCCCGTTTAGCCTTAAGACAACAACAACACCATTCATCCTCCTCTAATCAT 720
Query 721 tccgacaacaaccttaacaacaacaacaacatcaacaaTCTCGAGAAGCTCTCCACCGAA 780
|||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 721 TCCGACAACAACCTTAACAACAACAACA-C--CAACAATCTTGAGAAGCTCTCCACCGAA 777
Query 781 TATTCCGGCGACGGCAGCACAACAACAACGACCACAAACAGTAACTCTGACGTTACCATT 840
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 778 TATTCCGGCGACGGCAGCACAACAACAACCACCACAAATAGTAACTCTGACGTTACCATA 837
Query 841 GCTCTAGCCAATCAAAACATATATCGTCCAATGCCTTACGACACAAGCAACAACACATTG 900
||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 838 GCTTTAGCCAATCAAAACATATATCGTCCAATGCCTTATGGCACAAGCAACAACACATCG 897
Query 901 ATAGTCTCTACGAGAAATCATCAAGACGATGATGAAACTGCCATTGTTGACGATCTTCAA 960
||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 898 ATAATCTCTACGAGTAATCA--A-GACGATGATGAAACTGCCATTGTTGACGATCTTCAA 954
Query 961 AGACTAGTTAACTACCAAATATCAGATGGAG 991
|||||||||||||||||||||||||||||||
Sbjct 955 AGACTAGTTAACTACCAAATATCAGATGGAG 985
Score = 505 bits (273), Expect = 4e-142
Identities = 293/303 (97%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1105 CTAATGCCTCAAACTCAAGCGGCGTTAGCTATGAACATGATTCCTGCAGGAACGATTCCA 1164
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CTAACGCCTCAAACGCAAGCGGCGTTAGCTATGAACATGATTCCTGCAGGAACGATTCCA 1047
Query 1165 AACAATGCTTTGTGGGATATGTGGAATCCAATAGTACCAGATGGAAACAGAGATCACTAT 1224
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1048 AACAATGCTTTGTGGGACATGTGGAATCCAATAGTACCAGATGGAAACAGAGATCATTAT 1107
Query 1225 ACTAATATTCCTTTTAAGTAATTTAATTAGATCATGATTATTATCCATGACAATAATTAT 1284
|||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 1108 ACTAATATTCCTTTTAAGTAATTTAACTAGATCATGATTATTATCAATTACAATAATTAT 1167
Query 1285 TAATGCTGCTTTGCCATATTTTCATACTCCTTATATATTGTTATGGCGATAGACAATGAT 1344
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 1168 TAATGCTGCTTTGCCATATTTTCATACTCGTTATATATTGATATAGCGATAGACAATGAT 1227
Query 1345 TGATTACTGCGAGTTTATGTAATGGAACTGATTCTCAACATATATAGTCAATTAAGTAGt 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TGATTACTGCGAGTTTATGTAATGGAACTGATTCTCAACATATATAGTCAATTAAGTAGT 1287
Query 1405 ttt 1407
|||
Sbjct 1288 TTT 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5